TCONS_00021762 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00021762
Unique Name	TCONS_00021762
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3060

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000394:249980..258137+

transcript sequence

>TCONS_00021762 ID=TCONS_00021762|Name=TCONS_00021762|organism=Clytia hemisphaerica|type=transcript|length=3060bp
TTTTAATGAAAGATGAATCAAATTTGCGATGTGCAGACTGTGGCACCACT
AAAAATGTGAATTGGGCTTCAATAAAATGTTTGGTCATCATATGTAAAAG
GTGTTGCGGGCGTCATAGGGGATATTCTCAAAAATTCTTCCTACCAAGAT
CGATTTTGATGGATGTAAAGATATGGACAAACGAATTAATCGAAattttc
aaacTTATGGGAAACAAAAATGCTAATATGTTATGGGCAGCCAAACTCCC
TCCAGACGAACAAATCTCGCCAGATTGCTCAACGGAGGAAAGAATTACCT
TTCTAAAAGATAAATACATTcacaagaaatatttcaaactcTCTGAACAT
TTTGGATTGGAACATGAGCTAGGAGagGCACTAAGAAAAGCAGTTGTGAC
AGAAGATCTTATCCAAACTTTCCGACTGATACAATCTGGTGCCTCGGTGA
TGTATATACCAGAAGAATCCGAAGATAAGAGGACTCCATATCAATTGGCG
GAAGATGCTGGACAGAGCCTCCAAGTGGCGCTTCTTGAAATCTACAAAGG
AAATTTATCTATCGAGGAGTGGGAAAAAGAGCAACAAGAGGAAGCCGCTC
GAATCGAGGAACAATTAAGACGGCTTCCACAGATCCAAGATGATAACACC
GTATATTATGAGAAAGCTGGAGAGCTGATGATGAAAATGCACGAAAAGGA
GAATTGGAGAGATGCCAGGATGTTTCAACTTAAAGAGAAGATCATTCACC
GCAGTATTCGAACGGAAGAAGGGAAGCCGCGAACAGAAGAAGTCATTGAT
TTACGTCAAATGGAAGAAATCAAAGCTTTGGATGACCAAGTCACTTTCTT
TTTGCAAACATCCTCAAATCACAGTGCCAGAACGTATTACTTTAAAGCAT
TCACACCTGAAGACTGTCGTAGTTGGTTTACAGCCATCAAAAATAAACAG
GTTTTCGAAGTGGCCCTTGACAAACAAGAAGTTAGTGCAGATAAAATCCC
TTACTTGGTAGACAAGTGCATTAAATACATGGAAACGAACGCGTTAACGG
ATATGAAGACATTGACGCAGGAAGGCATCTATCGCAAAAACGGGAGTCAA
GCACAGATCAGAGACTTAACGAAACTTTTCAACCAAGACGCTGCTAACGT
GCGCTTAGATATCAGTGAATACTATGACGTGCATGTCATCTGTGGCTTGT
TGAAGAAATATCTTCGAGATTTGCCTGAACCTCTTGTCACCAACATACTC
TATGAAAGCTTCCTGCAAAACACTTACGAAGGTGAAATCGAACACAATGA
GCGTTTGTACCGGTACCGAGATTTGATCAAAGGATTACCTGCCATCAATC
TCCTTTGTTTACGCGCGCTcattcttcatcttcatttaGTGGTGGAGCTA
TCATCTTTTAATTTAATGACAATGGAAAATGTCAGTTTGCTTTTCGGACC
AATCATCTGCTCATGTGGAAGAACATTAAACCAGGATAAACTGCGATTGG
AGTACAAAGTCCTTCAAGATTTATTGACTTACTATAAATGGCTTTTTGAT
gTTGATGAAAACGAAACAAAAAGTCAAGAAGCCATTTTGAAATTCACAAA
AAGTGCTGCTGAAAGCACTGTCACACCAACGATCAACGAAGGTGGAATGC
AGATCACCATCTACTTGAAAAACATCGAAGATCGTATGCTAGTAGATAGC
AGTACCAGACCTTCTGATGTTTGCGCGTTCTTCATCAAAACACACGACTT
GGATCGAGCTACCAATTGGGCTTTGTTTGAATCCATTAATGACGGAACTT
TTGAAAGACCACTTAGTTCCAAAGAATCCGTCTATGACTTGGCTTTGTCT
CTCTCTGATAATGGAAAGCTCATCGTCAAAGAGAATTATCTGCTGGAGAA
ACTGGCACCACATCAATCAGCGAGCTTCAACAGTGGAGGGGTGATACACT
TTTTACGTGACAAGTCTAGTTGGAAGAAAGTTTACCTGGAAATCAAGCAA
GGAATGCTTCGAGTTGCTTCCTCCAAAGACTCCAGTAAAGACATCGATAA
ATTTGGTATTGTAGATGCACAAGTGCTCCTTTACAGTGGCATTGACCCCA
AGAAGAAAGGACCGGCTAATAATAAATTCGGGTTCATGATCAAGGTCAAT
GGTTCCATTAGCAATACTCAACCAAGGTACTTTTGTTCGGACCAAGAAGA
AATCATCAACATGTTCATGGCAGTCATCCTCAATTTGAGGTATCCAGTTG
GTATTTGGACTGATCGATGCTCCAAAGATTTCAGAGAAACCGAGGCTGAA
AGTAATCGCAACTCGCAGTTCTGGGGTCGTCAGTCGATGGTGATTCAGCA
AGAAGGAGCAGCACACAGATTTACTGAACAACTACAAAGCAAAAGAAGTA
CTCTCAGAAGACTTTTCAGAACTTGACCCTTCTTCATCctaatgaaaaat
ttactttAGGGGTTTGAAATAAAGAGGTGTAAAATTGGGAGGCTCTACAT
AATCCTCtttgatggaaaaatggaaCGCTGATGAATTCGTGGCTCACAAC
CCGCCGATGTACGCATCCTTTCCTAAAATCTATATCGATTATATTTTGAG
GGGCTGTTAGATAACGGAATGACTGTAATTAGTTTAATTTTATTAGAACG
ggaccaaaattaaaattcaaccaaatttttgtaaacagtttttatatttt
tttcaaatggcagaattttttcaCGAATTTATACAAATATTTTTCTatta
agaattttttgtttatacatTATTTACATGGGATAGATATAAAAACGCTT
GTAGAATTCGATGCTCTCGTCTCGCTTAATACTTTATACTCGAAATTACT
TTGGTTTAAATCAGCATGACAAATTTAAGATTATTCGATTTTTTGATCAC
TTAACTTTTCTAGTTTCTAGATGTTTATGTATGTAATGAGTTTCTTTATA
TGATTGTACAAATTTTTGTATTATTGTTTTGAATGCAgttttttgataat
aattttcttttgtttattttaaataTCATTTACAAAGGTTTATAATTAAT
TAGAAGTTTT

Run BLAST on NCBI

transcript from alignment at sc0000394:249980..258137+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00021762 ID=TCONS_00021762|Name=TCONS_00021762|organism=Clytia hemisphaerica|type=transcript|length=8158bp|location=Sequence derived from alignment at sc0000394:249980..258137+ (Clytia hemisphaerica)
TTTTAATGAAAGATGAATCAAATTTGCGATGTGCAGACTGTGGCACCACT
AAAAGTAAGATATATTTCTTTGGCTGTTGTTATTTATTTAGTTACAAATA
GATATGTATATAGATATGTCGGGTATCTTTCAAATaaaggttgaaaaatg
aaagaagtttttttgatttcgttttaatatttccaaatgGTATATTGAAC
ATTTTGATACTCGTTTTTTATTAGATGTGAATTGGGCTTCAATAAAATGT
TTGGTCATCATATGTAAAAGGTGTTGCGGTAAGAAGACATCTTCATTCTA
CATACAAGGAACAACAAGGAACTGATGAAGTTAGAATAGagcaccgcgct
gaatctagaaataaattttatttttgacataattattACTCTCTGTATGT
TTggacgagttccaatcccatcaacctttgcgttaatctcttttgcacgt
taattgcatcatttgacaaaagatatataacaacttgcatgtatctttaa
ttgagccgcattgaattgtgggattgtaactcgtacaaatttcaaaaaaa
gtgaaaagtaataattatgacgtatgcgttgcggagcgctataGAGAGAC
AACGCACACTTGTTTTTTTACAGGGCGTCATAGGGGATATTCTCAAAAAT
TCTTCCTACCAAGATCGATTTTGATGGATGTAAAGATATGGACAAACGAA
TTAATCGAAGTAGGTGTTTAAAATTCACACATTTTAGGAGTTGTATATAA
GGTATTATTAGAACTAGTATTAATCAAGGTTTTTCTGACTTGAGGCAGTA
AACATGCATTTGGTTTAATTCGTTAGCTCGAAAATAAATTCATtcatttc
aaaggaaaatcttCTATAAGTGACAGAGATGTGACATGGGATTTCTTACT
ACTGTCATttcattcaatgtaaaaaagaaGGAATACAATAAAGcatcttt
tttgattttcagattttcaaacTTATGGGAAACAAAAATGCTAATATGTT
ATGGGCAGCCAAACTCCCTCCAGACGAACAAATCTCGCCAGATTGCTCAA
CGTAAGTATCATGGCAAGTATGAAGTGAATGCTTTTTCAACCTTTCCATT
GCTTATAGAAATATCACTGTTGTATACaacttttttgtaagaactgcTTA
ATGATTCATTACATAATTTCTATTTGACAGGGAGGAAAGAATTACCTTTC
TAAAAGATAAATACATTcacaagaaatatttcaaactcTCTGAACATTTT
GGATTGGAACATGAGCTAGGAGaggtatttaatttttgagagaAACTCTT
TATTTTTGCAATAAACGTGATTTTGAAAGCAACTTAAGCGATTTATGTAT
GGGCAATTTTGTTATAAACGATCGAGGTTAATTTAGTTGATTTATTGGAC
AATATTCATTGGTTTACTTGAACTTGCTCGTAAGTGCCACAACTCCTCTC
TTCTTTTTAAGGCACTAAGAAAAGCAGTTGTGACAGAAGATCTTATCCAA
ACTTTCCGACTGATACAATCTGGTGCCTCGGTATGTTCTTTTgtatttgt
actagtaatcgtatggtttggagtgcaattaacgattaatcacgagtaac
aaaggagaaaatagtaatttgcacgagtccgaaggacgagtgcaaattac
ggtattttctcctttgtacgagtgattaatcgttaattgcacgacaaaac
atgaTTCCGAgctaatcgtcagtaaataatcattagtaaatcatagtttt
ttttagccgaagagtgcaaaaagtggtaatagtgcaattaacgattaatc
gcacttctctaaaccaatcagattcgagtaattttgcacggctgacgatt
agtTTTGAGAATGATCAAACCAGAGCAAACTTGTATTTATACATagcaat
tttttaagaaaaagtgaacTTGTTAAAGAATAATATTAAGCTGTTCTATT
TAACATCCActcaggggggtggacgaaccttttcaagccaaaaataattc
ttgagaatgTGTGAATACCACttggaaaatagcaaaatttgtcaaagaaa
aatCTTCTTCATACCATTAAATAAGgttggacgaactaaaatcagttttt
tacccCCGGGAGTTTTAGAATAacattttaccccctggaaaattaaaaag
attcttttagacctctggaaatttttctttgcattaccccctggaaatgt
ttgtcCAAACCCTACCTGTATGGAGATGGCCAATTacgtttttatatttt
caatgaaGATGTCGGGTATTATAAGTTTTTAAATTAAACActctccaaat
ttgagtcaataGATAATTTTAATACTACTTTGTGCAATTATTTGATAGGT
GATGTATATACCAGAAGAATCCGAAGATAAGAGGACTCGTatgtattttc
attgttcttCGTCCATCAAAAGATGTTTGCCGATTTCTATCAATCCCCAC
ATTAATGCTGGTCAGTTTCTTAAcaatttcttttccttttcagCATATCA
ATTGGCGGAAGATGCTGGACAGAGCCTCCAAGTGGTAAGAAAAGACTTTA
CACTCAGACAAGCGACTCACTTCATGTTGAACTTGAAACGTCTTCAATcg
gtgaaatagaaactcactGCAAaccttttgtaatttttctatttttttta
ttgtataattTTATCTGTTTTCAGGCGCTTCTTGAAATCTACAAAGGAAA
TTTATGTAAGTATGCTCTCTCGATGTTATTCATACTTTTCAGAGACTCAT
TTTTTATACATTTGGATTTCAAATAACCTCTCGACACTTTATGAAGATTA
CAACACGACTATTTCTCTCTTTTTACAGCTATCGAGGAGTGGGAAAAAGA
GCAACAAGAGGAAGCCGCTCGAATCGAGGTTTGTGAAATATCTTGAGCCT
TTCTTTAGATATTACTTGTAACAAGAGTGACATGTTCTGATGGAATTTGC
ATTTTGTTTTCAGGAACAATTAAGACGGCTTCCACAGATCCAAGATGATA
ACACCGTATATTATGAGAAAGCTGGAGAGCTGATGATGAAAATGCACGAA
AAGGAGAATGTACGTACTCGGCTTTTCATTTTCTTACTCGTTAGAACTTG
GAAGCGGTTATCATTCCTTTTCTTTCGATAATTCATACTGATGTCCCATG
AATTTTACTTCTcaaagaagaaatattttttatggaTGACTATATAACCT
TGAATTCTAAAAATCACATTTCAGTGGAGAGATGCCAGGATGTTTCAACT
TAAAGAGAAGATCATTCACCGCAGTATTGTAAGTTTTCTTCAAGCTTCTA
tcgtttttttgaaatctatacAGTGACCCGTGCAATCCGAATAATTAACC
ATTCGAATTGTTTACTTCAGCGAACGGAAGAAGGGAAGCCGCGAACAGAA
GAAGTCATTGATTTACGTCAAATGGAAGAAATCAAAGCTTTGGATGACCA
AGTCACTTTCTTTTTGCAAACATCCTCAAATCACAGTGCCAGGTAAGTTC
CTTAAGCAACGTTTAGTTTGGAATTCAGCAGCACTTTTCATCACCTTGCC
ACTACAACTTGAATTTGTTCTCTTTTAGAACGTATTACTTTAAAGCATTC
ACACCTGAAGACTGTCGTAGTTGGTTTACAGCCATCAAAAATAAACAGGT
AGATACAATTTAACCAGCCCATTCTGCAAAAGTAGGTTTAATGCTTTTTC
GCCATCAATTTCTTTCTTAAGGATTTGATTGTTCTCCTTTCTGTACATTT
TCACTGTATCTCTTGCAGGTTTTCGAAGTGGCCCTTGACAAACAAGAAGT
TAGTGCAGATAAAATCCCTTACTTGGTAGACAAGTGCATTAAATACATGG
AAACGAACGGTATGTATTCCTCATTCACCCCTTCTATGTTCTTCTCTCAA
TTCTTGCAAATACCTCACCTTGTACGTTCTCCCTTTTTGTTTCAGCGTTA
ACGGATATGAAGACATTGACGCAGGAAGGCATCTATCGCAAAAACGGGAG
TCAAGCACAGATCAGAGACTTAACGAAACTTTTCAACCAAGGTACTTTGC
AAGAGTCATTAATCTTAACCACCATTGTATGAAGCTAAATTCTTGTTTAT
TCAGTCCTTTCAGTCGTCTTTCAATTGAAAATTGACAATGAGAAATGTGC
AACTTATTACTGTATATGTTTTCATTTCAGACGCTGCTAACGTGCGCTTA
GATATCAGTGAATACTATGACGTGCATGTCATCTGTGGCTTGTTGAAGAA
ATATCTTCGAGATTTGCCTGAACCTCTTGTCACCAACATACTCTATGAAA
GCTTCCTGCAAAACACTTGTAAGTTTTTCCTCGAACATTTTGATCATCTC
AAAGTTGTAACAGTAGAAAAAGAGCTAATAATATAAATGTTCTCTCCTCT
TCCCTTATTCTCGTTTAGACGAAGGTGAAATCGAACACAATGAGCGTTTG
TACCGGTACCGAGATTTGATCAAAGGATTACCTGCCATCAATCTCCTTTG
TTTACGCGCGCTcattcttcatcttcatttgtAAGTGATGCCTGTTGTTT
TTCTTCGCACTACAAACTAAAGTTTGAGAAGAATCTTTTTGTCAAAACTT
TTGAGTGGTCTGAAGACGTTATTGGATATCGATTGGTTGCTTTGTAATGT
TAATATTATTTTTGGGACCTGCCCTTTAACTCGCCAATGGTATCTTTCTT
actttgtaattattttttttgtagaGTGGTGGAGCTATCATCTTTTAATT
TAATGACAATGGAAAATGTCAGTTTGCTTTTCGGACCAATCATCTGCTCA
TGTGTAAGTTGTGCTTGATAGAAGTGTTCTTCTGTTCTTCGATTGATCTA
TTCATGAGAACCTGTTAATGAtgtttctttctctttttcatAATAGGGAA
GAACATTAAACCAGGATAAACTGCGATTGGAGTACAAAGTCCTTCAAGAT
TTATTGACTTACTATAAATGGCTTTTTGATGTGagtacttgtttttttat
tgtgAAGCCCTCCTGTAACCCCCATTTTGTCAATTAAATATATTATTATA
CTTCATATTTTGGTCATGGAATGATAGTCaggaaaaaaagacactttttt
tattctgctactggcagtttcatgtcACTTTGGTGACAATCTTCAAGCAA
TGATTTAAAATTTAAGGATATAATTTGGATATAATCTTTCAACGAGCTAT
TGACTAGCCAAAAACTCTTCTTGTTCCGGAGATAACGGATTAAAGTTTTA
ACTTGTCAATTTTCTggaaagaaaactttaaaaaggcCTTGGTACTTAGA
GGGTGAATGAGAGAATTAGGTCACAAATTATCACCNGAAAAGACCTTGGT
ACTTAGAGGGTGAATGAGAGAATTAGGTCACAAATTTTCACCACGACACC
AAcattctttctttatttttcataggTTGATGAAAACGAAACAAAAAGTC
AAGAAGTAAGTCAACAtttataactttttatcttgaactaattttaagta
aaaacttACCTGATTATGTGATATTAAAATACTTTTCTGTTTCTTCTCCA
GGCCATTTTGAAATTCACAAAAAGTGCTGCTGAAAGCACTGTCACACCAA
CGGTAagtctctttttttttgctcgaaatcgaagttttttctgtttttgc
cgTCATTCTTCGTACACGAAGTGAAATTTCTTACCTCCCATCCTTGATAG
ATCAACGAAGGTGGAATGCAGATCACCATCTACTTGAAAAACATCGAAGA
TCGTATGCTAGTAGATAGCAGTACCAGACCTTCTGATGTTTGCGCGTTCT
TCATCAAAACACACGACTTGGATCGAGCTACCAATTGGGCTTTGTTTGAA
TCCATTAATGACGGAACTTTTGAAAGACCACTTAGTTCCAAAGAATCCGT
CTATGACTTGGCTTTGTCTCTCTCTGATAATGGAAAGCTCATCGTCAAAG
AGAATTATCTGCTGGAGAAACTGGCACCACATGTAAGTTATTGACCCTTG
TGACATTTTGAAGAATACCCACGTTGTGAATCTTGCTCGTACTTTACAta
tgaagtttgcaaaaaattaatcataaggtgttttctttttgctttacAGC
AATCAGCGAGCTTCAACAGTGGAGGGGTGATACACTTTTTACGTGACAAG
TCTAGTTGGAAGAAAGTTTACCTGGAAATCAAGCAAGGAATGCTTCGAGT
TGCTTCCTCCAAAGACTCCAGTAAAGACATCGATAAATTTGGTATTGTAG
ATGCACAAGTGCTCCTTTACAGTGGCATTGACCCCAAGAAGAAAGGACCG
GCTAATAATAAGTATGCCGCCTTGAAACCTTGTTTATATACCGTGTTTCG
TCTTTTCAGCACAGCCTTCTTCtgaagaaatcttgaaaatttgaagagtT
CCGCCACGAGActattttgaggatttttttctcggttttttattctattt
caaggttctttaatttttctgattttgaagaagatgtatgcttttttttc
atttcgtaGATTCGGGTTCATGATCAAGGTCAATGGTTCCATTAGCAATA
CTCAACCAAGGTATGGTCTCTTTTTTCAGAACAAAAagcttttcttcttt
ctttcaacTTTCAACGATGAATGATATGAGTTTTGATGACTTGATTACTT
TCTACTGAAGACATATTTTGTTGATTGCAGGTACTTTTGTTCGGACCAAG
AAGAAATCATCAACATGTTCATGGCAGTCATCCTCAATTTGAGGGTAGGT
ATCATCCCTTacttattggacctacctggaggttcTATGAATAAACCCCT
GCTCGTTCGTTCTAGTTAccagctttcctcatgattgattcattgaattt
ttctgatcttttgcaCCAAGATGTAAAGAATTCCAGTTTTCGAAACATCA
ttctcgttagttttttctaatttcttgtttattttaaattcaatgttTTC
TGTTGATTAGCCGGGTAATTacatcaaagtatcacttgtatTTCACTGTC
TTTACATTCTTTacactttgaaatctttgtgTATGTAATTGTTATTGTTT
GTTATGCTTTCAGTATCCAGTTGGTATTTGGACTGATCGATGCTCCAAAG
ATTTCAGAGAAACCGAGGTGAGATTGCGTTCATCCAGTATATTCAGATGG
TTTTGTGAATGCTAATTTAGAAGAAGCAGGGCTGCTTGCACATTTTCGAG
ACTAATTAATCTTTTCTTCTGTTTAGTCCATTATCAATGAAATATTAACC
AACTTCTTTTCGCTTTCTTTAGGCTGAAAGTAATCGCAACTCGCAGTTCT
GGGGTCGTCAGGTATTTATTAAGCTTTATCCAATATCAAGAgcattttta
tatatttaataCATTCAAATGAACATAGTTTTTACTTGGTGAAAGAACGA
AAGTTTTGACCTATCATTTTATCGCTTTCAGTCGATGGTGATTCAGCAAG
AAGGAGCAGCACACAGATTTACTGAACAACTACAAAGCAAAAGAAGTACT
CTCAGAAGACTTTTCAGAACTTGACCCTTCTTCATCctaatgaaaaattt
actttAGGGGTTTGAAATAAAGAGGTGTAAAATTGGGAGGCTCTACATAA
TCCTCtttgatggaaaaatggaaCGCTGATGAATTCGTGGCTCACAACCC
GCCGATGTACGCATCCTTTCCTAAAATCTATATCGATTATATTTTGAGGG
GCTGTTAGATAACGGAATGACTGTAATTAGTTTAATTTTATTAGAACGgg
accaaaattaaaattcaaccaaatttttgtaaacagtttttatatttttt
tcaaatggcagaattttttcaCGAATTTATACAAATATTTTTCTattaag
aattttttgtttatacatTATTTACATGGGATAGATATAAAAACGCTTGT
AGAATTCGATGCTCTCGTCTCGCTTAATACTTTATACTCGAAATTACTTT
GGTTTAAATCAGCATGACAAATTTAAGATTATTCGATTTTTTGATCACTT
AACTTTTCTAGTTTCTAGATGTTTATGTATGTAATGAGTTTCTTTATATG
ATTGTACAAATTTTTGTATTATTGTTTTGAATGCAgttttttgataataa
ttttcttttgtttattttaaataTCATTTACAAAGGTTTATAATTAATTA
GAAGTTTT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_012211	XLOC_012211	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000394	supercontig	sc0000394:249980..258137 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.90002	1.35793	0.856976	0	1.70243e-10	0.0034655	1.47594	1.00103	2.48333	3.8242	0.839683	1.31078	3.92485	4.54094	3.76822	4.56497	7.34791	11.2306	8.89855	7.35342	3.75214	4.98243	9.43521	7.1885	2.82966	3.92051	24.6659	27.6726	12.3893	9.19865

Blast

[Close]

BLAST of TCONS_00021762 vs. Swiss-Prot (Human)
Match: ARAP1 (Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 OS=Homo sapiens GN=ARAP1 PE=1 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 6.201e-33
Identity = 75/172 (43.60%), Postives = 94/172 (54.65%), Query Frame = 3

Query:   21 NLRCADCGTTKNVNWASIKCLVIICKRCCGRHRGYSQKFFLPRSILMDVKIWTNELIEIFKLMGNKNANMLWAAKLPPDEQISPDCSTEERITFLKDKYIHKKYFKLSEHFGLEHELGEALRKAVVTEDLIQTFRLIQSGASVMYIPEESEDKRTPYQLAEDAGQSLQVALL 536
            N  CADCG  +  +WASI   V+ICKRC G HRG        RS+ MD K+WT  LIE+F  +GN   N  WAA +PP E + P  S   R   L+ KY   KY +    FG + EL +AL  AV T DL +T  L+  GA +     + E   TP  LAE AGQ+LQ+  L
Sbjct:  547 NRFCADCGAPQP-DWASINLCVVICKRCAGEHRGLGAGVSKVRSLKMDRKVWTETLIELFLQLGNGAGNRFWAANVPPSEALQPSSSPSTRRCHLEAKYREGKYRRYHPLFGNQEELDKALCAAVTTTDLAETQALLGCGAGINCFSGDPEAP-TPLALAEQAGQTLQMEFL 716

HSP 2 Score: 114.39 bits (285), Expect = 1.427e-25
Identity = 140/538 (26.02%), Postives = 236/538 (43.87%), Query Frame = 3

Query:  786 EEVIDLRQMEEIKALDD---QVTFFLQTSSNHSARTYYFKAFTPEDCRSWFTAI-KNKQVFEVALDKQEVSADKIPYLVDKCIKYMETNALTDMKTLTQEGIYRKNGSQAQIRDLTKLFNQDAANVRLDISEYYDVHVICGLLKKYLRDLPEPLVTNILYESFLQNTYEGEIEHNERLYRYRDLIKGLPXXXXXXXXXXXXXXXXVVELSSFNLMTMENVSLLFGPIICSCGRTLNQDKLRLEYK---VLQDLLTYYKWLFDVDENETKSQ-EAILKFTKSAAESTVTPTINEGGMQITIYLKNIEDRMLVDSSTR-PSDVCAFFIKTHDLDRAT-------NWALFESINDGTFERPLSSKESVYDLALSLSDNGKLIVKENYLLEKLAPHQSASFNSG--GVIHFLRDK--------------------SSWKKVYLEIKQGMLRVAXXXXXXXXXXXFGIVDAQVLLYSGIDPKKKGPANNKFGFMIKVNGSISNTQPRYFCSDQEEIINMFMAVILNLRYPVGIWTDRCSKDFR 2285
            EE + LR+++E+    D   QV   ++       RT Y +     D   W  AI K        L +Q++    IP +V +C+ Y+    LT       EGIYRK G  ++ + L +   QDA +V L   E + V  +   LK++LRDLP+ L T     ++L+ +     +  E++ RYR+L+  LP +N   ++ALI HL+ V   S  N M + N++++FGP +    +T  QD     YK   V++DL+ +Y  +F VDE E + Q E I    K     T + T + G    T+YL+  E +   +   + P+ + A  +    LDR          W  FE       ERPL   E V  +   L  +  L+VK++  +E +  + ++       G++ F  D+                    SS  ++Y E++       + + S +   ++ I   +V  Y G+  K + P    +GF +         Q  Y C D +  +  + A  L +++   +W    S+  R
Sbjct:  901 EEPLQLRKLQELSIQGDSENQVLVLVERR-----RTLYIQGERRLDFMGWLGAIQKAAASMGDTLSEQQLGDSDIPVIVYRCVDYITQCGLTS------EGIYRKCGQTSKTQRLLESLRQDARSVHLKEGEQH-VDDVSSALKRFLRDLPDGLFTRAQRLTWLEASE--IEDEEEKVSRYRELLVRLPPVNRATVKALISHLYCVQCFSDTNQMNVHNLAIVFGPTLF---QTDGQD-----YKAGRVVEDLINHYVVVFSVDEEELRKQREEITAIVKMRVAGTASGTQHAGDFICTVYLE--EKKAETEQHIKVPASMTAEELTLEILDRRNVGIREKDYWTCFEVNEREEAERPLHFAEKVLPILHGLGTDSHLVVKKHQAMEAMLLYLASRVGDTKHGMMKFREDRSLLGLGLPSGGFHDRYFILNSSCLRLYKEVRSQRPWSGAPETSHRPEKEWPIKSLKV--YLGVKKKLRPPTC--WGFTVVHETEKHEKQQWYLCCDTQMELREWFATFLFVQHDGLVWPSEPSRVSR 1410

The following BLAST results are available for this feature:

BLAST of TCONS_00021762 vs. Swiss-Prot (Human)

BLAST of TCONS_00021762 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ARAP1	6.201e-33	43.60	Arf-GAP with Rho-GAP domain, ANK repeat and PH dom...	[more]

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TCONS_00021762 (transcript) - C. hemisphaerica