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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021718 ID=TCONS_00021718|Name=TCONS_00021718|organism=Clytia hemisphaerica|type=transcript|length=1205bp
TGAGTTCTCATTCGTTTTCTAATTTACTAATGTTTATCATATTCTGTATT
TTCAgattaatgaaaaatgaataataaCAATAGAGAACAACCACACTCCA
ACCAACACCAGTTGAATCCAAATGCTCCATTTTTCCGACCACCAcctaat
caccatggtaattcaCCGAGGTGGCCTGGACCACCACAACAACCCAATTG
GTCTGGAAATTATCAAGATATGAATCAGATGAATTTCCAACACCATCCTA
ACCGTTTGAACTTGCCGAATATGACAGGACCTCTTCCTCAAAATCACCAG
TTTCACCCTAACCGTTTCAATCACCCTGGAGCTAACATTCCATCACCGAA
TACACCACATCCTAATCGTTTCAGTAATACTGGGTCCTTTCATCCTAGCC
CAATGAATATCAACAGACCAGGAACTCCACCATTACAAATGAACCAACCA
CGACCTTTCAATCAACAATCAAACCAAATTGGCTTTCAACCTATGATCAA
TCAAAACCAAGCGCAAAACCCACCGAACGAATTTCTCCAAAAGCCACCCG
CAACCTTTACAAACCAACAACAATTTCAACCACTTTTAGATAATGGATTC
CCACCACGCCATCCTGGCCCACCCGGAGCTCACATTCCGCCAGGCGCCCA
TTCAGGGTTCCTACCCCCACGCCAAGACATGGGCGCGCAACCACCCTTTA
TCCCTGGTCAAGGTCCAATCAATGAtaaagataaacatttagaTGAGAAA
GATCTCCTCAAAGAGAGAATGATGAAAATTGTTTCTAATTGGATGCAAAA
CCGAACTTtcaatgaaaataatcaaactCAAGATTTATTGAAAATCCACG
AATACAAGAAAGCAATGAAGAACCTTTCATCTAAAATCGATCAATTACGT
CAGTTGAACGACAAAATGGCTGGTAATGTGCATTGTGATCCTGACCAATG
GTCTTCTCTACTGAAAGAAGTTGCTTCTCTTAAgGCCGATGTCAGTCGGG
TACAGCGAAAGTTGATGGCGACAGAACAAatcgaatttatcgaaaaattg
aTTCAAAAACGAAAGAAACGAAGGGAACGTGAAAGACAAACTCGAAGATT
GCGAGCAGGCGATCGAATCAAATCGATGAGTAAACGAATTCAATCGAACC
AAGAAATCGATGACTGGCGATCCAAGGAAACTGCAAAACTTCAAATGGAT
AAAAT Run BLAST on NCBI transcript from alignment at sc0000393:34504..42509- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021718 ID=TCONS_00021718|Name=TCONS_00021718|organism=Clytia hemisphaerica|type=transcript|length=8006bp|location=Sequence derived from alignment at sc0000393:34504..42509- (Clytia hemisphaerica)
TGAGTTCTCATTCGTTTTCTAATTTACTAATGTTTATCATATTCTGTATT
TTCAGATTAATGAAAAATGAATAATAACAATAGAGAACAACCACACTCCA
ACCAACACCAGTTGAATCCAAATGCTCCATTTTTCCGACCACCACCTAAT
CACCATGGTAATTCACCGAGGTGGCCTGGACCACCACAACAACCCAATTG
GTCTGGAAATTATCAAGATATGAATCAGATGAATTTCCAACACCATCCTA
ACCGTTTGAACTTGCCGAATATGACAGGACCTCTTCCTCAAAATCACCAG
TTTCACCCTAACCGTTTCAATCACCCTGGAGCTAACATTCCATCACCGAA
TACACCACATCCTAATCGTTTCAGTAATACTGGGTCCTTTCATCCTAGCC
CAATGAATATCAACAGACCAGGAACTCCACCATTACAAATGAACCAACCA
CGACCTTTCAATCAACAATCAAACCAAATTGGCTTTCAACCTATGATCAA
TCAAAACCAAGCGCAAAACCCACCGAACGAATTTCTCCAAAAGCCACCCG
CAACCTTTACAAACCAACAACAATTTCAACCACTTTTAGATAATGGATTC
CCACCACGCCATCCTGGCCCACCCGGAGCTCACATTCCGCCAGGCGCCCA
TTCAGGGTTCCTACCCCCACGCCAAGACATGGGCGCGCAACCACCCTTTA
TCCCTGGTCAAGGTCCAATCAATGATAAAGATAAACATTTAGATGAGAAA
GATCTCCTCAAAGAGAGAATGATGAAAATTGTTTCTAATTGGATGCAAAA
CCGAACTTTCAATGAAAATAATCAAACTCAAGATTTATTGAAAGTATGCA
TTTATTTTTTACATATTTTACTGTTTAAGTTTGAATGTCCTCGGCAAATC
TTTTAAACCTATTAATCTATCAAGATATTTCACCCTAAAAATGTTATTAT
TAAAATTTGCCAACTTCTTATAGACCCGGAGGCATGACTGAACTTTTAGA
GTTTTTTCGAGTTTGTAAAACTTTTATACAAAAAAAGGTCTCTTGAAGTC
TTAAAGTTTTGAAAAGAGCAAATCTTTGATGCGACCAGAGAAAAATTTAT
AGTACCCGCTAATTGTGAATACTTTCTGTTTACAGATCCACGAATACAAG
AAAGCAATGAAGAACCTTTCATCTAAAATCGATCAATTACGTCAGTTGAA
CGACAAAATGGCTGGTAATGTGCATTGTGATCCTGACCAATGGTCTTCTC
TACTGAAAGAAGTTGCTTCTCTTAAGGTAAAGTTTTTATTTCTTAGTTCC
AAGATGTTAAACTCACAGATATCTTAGATAAAACACTATACATGTTTTTT
TTTTATAAGCAAGTGTTTGTCCCTTGGTCAGGCTCGAGTATGCTTAAGCT
TTCAAAGCATCCAGACATAGAATATGCTTATTATATGCTTAAGAATTATT
ATGCTTTTGATTCACCCAACCAAATTTTTTAATAAAATCTTTAAAATTTT
GTTAATATTCGATTCAAAAAGCGTTTTAGATTTTGGAGCAGTAGAACGTG
TCTCGTCGTGAAATGTCTTTTTTAACTTGACCACTTTCAAACCTTTTTGA
ATAGAAAGAGATTGACTACTTGAAAAATATTTCAGGCTGGCGTATATGCT
TATGTTATGTTTAGAAATTCTGCAAATCTGAGCCTTCATATGCTTATAAG
TGTTATGCTTATAAAAAAACATGTATAGAGCTTTCCTACCCTAATTTGAA
GCAAAATAACTCGCCATCTTGGATGAAGTGACGTCACAATTTAGCTTGCG
AGATCCTTGAAATTTTGAAGCCAATGCAGTGTCAAACAAGTTTCAAAACT
AAGGTCAATATTTTCGAAAATATTGGCTATTCTGTAAATTACACACTGAT
CACGTGACCGACCCAAAATTTTCCTTAAATATATTTTGATATATTTAAAA
CATATCTGGAAAGTTTCATGGCCATACATCATGCATTTGATGAGATATAT
CCATTTTCTTAGGCCATACCCCCTTTGAAATGATCACCCTCGAGGCCACG
CTGCCCCTTCTTTGGAGGGCCATAAGTCTTGGTACAGACACTTAGAAAAG
TGCCAACATAGTTTTTCTGACTCTCCAATAGTCAACCTTTCGAATGGTGC
ATAACACAGATAGTCCTTTTTGGACCTACCCCGGTGGGGTGGAGGTCCTA
TAAATTAACCCGTGTTCGTTCGTTCGTTAGTTAGTGTGTTAGTTACCAGC
TTTTCTCGAGATTGGCTCATTAGTTTTTTCTGATTTTTGGCACAAAGGTG
CATGACCACAAACCCTCCAATGTGACGGAGCCCGATTTTCGAAAAAAAAA
TTTTTAAGGCAAATTTGGGCCAAAAAACGGCTTAAAAACGGGTTTTTTGG
ACTTTGTAAAAAATTGGATCATTAATTTTTTCTGATTTTTAGCATGAAAG
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
TTTGTATTTTGACCAGTTATGTCTTATGTGTTTCATTGTTTCAATGTTCA
CTGATTAGTTTGATAACCAGGTAGGTCCATAAAAGTATCGCTTGTTTTGA
TACCAATTCGGCCCTTATCTCATGGACTATTTCTACTGTGACCTACTTTC
GACAGGTGGATTATTTCTTTTGCTTGGAAAATACAGAGTAGCTCTATCTA
GTGCTTTTTTTATAAGATACCTGTGGTTGAACTACGTTTATCACGTTCAG
CTAACGTAATATGAACGTCATTTCAACTTTTTGTTATATCAACGTTAGGT
GAACGTTTTGAACATTACATGAACCTTAGATTAACCTTACGCGCAAGCTG
ATTTAAGGACGTGGTCAACGCCCTCTAGAAACCTTTTTTTAAACTCATTT
GTTTAAAGTTATGTAAACAATTTCAATCTGATATTTTCAGATATTTCAAG
TCAATAAGCTAACTAATATCAAACAACATTTGACCCTCTCGTTTAGGTTA
CAAACAGATTTCACTGAAACAGTTTTCACGTTGAATGCTCACTTCTCTTA
TCTTTAGGCCGATGTCAGTCGGGTACAGCGAAAGTTGATGGCGACAGAAC
AAATCGAATTTATCGAAAAATTGATTCAAAAACGAAAGAAACGAAGGGTA
CTTTGCATATTAGATTTTTGTTTTTTATTCGGTACAGTAAATGTTTTTTT
TTAATAAGCAAGTGTCTGCCCCTATATCACGCTCGCATTATGCTTAGCAT
TCTATTGTTCTTAAACAATGAATACAGTCATTGTTTAGGTACATAAAACT
GAGCATGCATATGCTTATATTCGTTATGCTGATAGGAAAAAAAAAACATA
TAGTGCTCCAAAGTTCTTCCCGTCCTAGACAGATTTTCGTCAAAGGGAAG
TATAGTCTTTATGCTTATCCTCTAACGTTTTAGAAGCCGCGATAATGTAA
CGTCAATAAATCTAAGTTATTCGAATGCTTATAATAGTTTGCACTCTACC
GCAGAGACTCGGGAATGTTTCTAGAGTTTTTGCGGGAATTTGCTTGGTTT
GATTTAGCGACCACATCACTGAAAACCGGAATTTTTCATCTCGTTTCTTA
GTGAGTTCTAACTTGACGATTTTCGAAAAAATAGAAGCCTTTCAAGTGTT
TTGACGCAAATTCGATTATTTTGCTACTGCAGGAGTTTCGAAAATTAAAA
GTGACGTCAAAACCCGGGCTCAAAACATTCGAAAAAGTCGTAAAGTGGAA
TAGACGTTAATTGCGCAAAAAAAAACGCGGGTGACGTCTAGTACTAGTAT
AGGCTAGGTTTGATTTAGTTGTGTCTAAAAGTGCCGTGCGCCGAGAACAA
ATGCTTCTTGTAAATTCATTATCCCTACCCCTTAAAAGCCTACCACGCCG
CTAAGGGTTAATAGGTATATTTATCTATTCGGTTTATTCTCAGGAACGTG
AAAGACAAACTCGAAGATTGCGAGCAGGCGATCGAATCAAATCGATGAGT
AAACGAATTCAATCGAACCAAGAAATCGATGACTGGCGATCCAAGGAAAC
TGCAAAACTTCAAATGGATAAAATGGTGAAAGATTCATTACTTCACTTTT
TAACGATTTTACCCACTGACTTTTATATATCCCTGAACCAAGACATTGTG
ATAAGATTGCTCACGGGAATTTCTAACCCGCGCGAGCAAACCCGCACCTG
GCAATCACTTTTTAGACCTGTCAATCATTTTTTAGACCTGTCATGTCAAT
CATTTTTTAGACCTGTCAATCATTTTTTAGCAGCTAGTTTTCCTTTTCTT
TCACTTGTGGTTCTGAAAAAAGTGATTGTAAGATAATAGAAAAGACGAAA
GTCAATTTTCATGCATTTTTTTAGTTGAAAGTTTTGGAATACTGGATTTT
CAAGAGAAGGGAAAGTCATGACTCTTGACTCTTGACTCTTACCCGCTAAC
CAGCCTGATCCATTTTGAAATACTGTACTTGAGTCAAACTGTACTGTAGT
CAAAATTTTTGTTTCTTAGAATTATAACGGGAATTTTCAAAAATATCAAT
AAGAGATCATAAAACCAGAAAAAGTTTGGCCAATGCTGACAAAATAACAC
AAACTTCAACGCACCGTATAGGATTCGAACTCTCAAAAACATCATCCGCA
TGTATGCCAGCGCATCGCCTTATCCGCTCAGCCACCCAAGCTTGATAGAA
CCGAAGACAATGAGGGCGATAATTTTATTTGCCATGATCTGTATAATTTT
ATTTACCCTGTCAAGGTATTAACTTCTTAAACAAATGATTTTAGATCGTT
TTCAACATGCGGGAGCCGACAAGCCGATCACTCCATCGAGATTTTCAGGG
GATTTTCATGACTCTTTAGTGGGACTGCAACACAAACGGGCTGTTTACCC
TGTAGAATTTCCATCTGGGGGGTTAGTACACCTCTCCAATCTTTTTAAAA
TCTCAAAAGACTGAGGAGAGGAGCTTTGTCTGGCATACAGTACCCATATA
CAGCAGACAGAATTCACAGAGCGTGGCGATTAAACACGTTCGCGCGGAAT
GCGGGTCAAAAAATTCCCGTGAGCAATCTCGTTATTTATCAAAAAGTGAA
CCAAGCTATATCCGCCATCTTTGATCGAAGTTTTTTTTGAATTGGTACCC
GTAAAGAAGCCATTGCAGTGTCAAAAATTAACGTCTAACGGCGCTACATC
ATTAAAAGTTTTCGAGGGAAAATAGATCTAGCGCTCTCGATGCATTTGCA
CCGCTATTGAGTAGTGCCGCCATTAGGGTACCACTTTTCAAAAAATCAAA
GATTTTGCTTGGCCGGGGTTGAGAAACTTGGTCCAGGGTATATAAAGGTC
AGTGATTTTACCTTGCTCTGTTTTTCTCTAACAAATGAAATAACTCATAA
AAAACCCTAAATGTGTTGATCAATAGTTGTACCAAAATGGTAGCACTTCC
CAATAGTGCTGTTATACATCAAATGGTTTGATTTACTTCGCTTTGAATAC
TTGTTATGTGACCACGCTGATAGCAAAGTTTTAAGACTGCAGCGCCTACT
TTGTGGGTACCACTTTCAAGGTGGTATCTAGAAAATAGGCACCAAACATT
TGCCAATAGATCTTATCGGAGTTTTTGATTTTTCTAAAACATCGATGCAT
TGTGGGATTGTTTCGGGGGTATTACAATAGAATCCCCTCGAGGAATTCCT
AAGAGATTTCTATTGTAGTACCCCCGAAACAATCTCACAATGCATCGCTT
TTTTAGAAACATCAGAAACCCCGATAAGATCTATTAACAAAGGCGCTCAA
AGGCTTAACGAGAATTCGTCTCATAACTGAATCATTACCGAGTTTATGTA
TGTGTGTTTTTCTGCGACGGATACGGTAATGTTCTGATTTGTCTACATCC
TGACTGACTGAGGATAGATAAATCAGCACTTTTACCGTCCTTGATTTTGC
AGGTCAAAACTGCGGGTTGTTCCAAATCTCAAAAGTGCAAATACCTTATC
GGGGAAAACTTCGTCGGGGAAAAGTATTCGTCACTTGCTAGTAGTTGGTA
AACGCATCAAGGCCGGGGAAAATTTTCGTCGGGGAAAAATATTCGTCACT
TTGCCAAAATTTCGTCACTTTTCCCCGAGGAAATTTTCCCCGATAAGGTA
CATAAACTCGCTATTTTCTTCTGTTAGTTGGAGTCACTGCGAACGGAGGC
TGGTGAATCTTTAACCGAGGTCAAACGAAAACAGAACGAGGCTAGTGAAA
AAATAATTGTGTTACAAAGGCTAAAAGAGTTACGTGATCTTCGAAAAGGA
ACGGCCATTTATAAAGGTAAGTAATTTCATTCTTGAAAAAAGGATTCACG
ACTCATTGGTCGTTTACCTTTGGTTATAAGACAACACGTGTTTTTTATAA
GCATACAAAAATTCGAAACCAATCTTGGAGATGCTTAGGGGAGGTCTTGA
CAAGGCTGAAAAATGCTTATGAAGATGCTTATATCCTAAGCAAAATTTTA
GGGAAATTCCAAAAACCCGTAAAATTCCAGCCAAAAACAGACACAAGCAG
GGAAATACATTTTTCGTACGTAATGCCTAGCTTATGCTTAAATGTTTGCT
ACATTTGGGCCTATATATGCTTATAAGTGCAATGCTTGGAAAGAAAAAAA
CATGCACTGGACCAACGATGTAAAAATAATAGATAACCAACTTGCCTTGA
TTCTCAAAAAACATCCATGTTACGGTTGTAAAAATATTAATGGCATTTTG
CATCGTAAAAAGTGCAATTAAATAAAAAGTTGCTTCATTTGCAACCTTCT
ATTGGACAAAATCGATCACGTGATGTATATTTTTCCAAAATTTGGGTTAG
AAAAAGTGTATTTTCCTATAGGCAGCCTCANCGCAGAGACTCGGGAATGT
TTCTAGAGTTTTTGCGGGAATTTGCTTGGTTTGATTTAGCGACCACATCA
CTGAAAACCGGAATTTTTCATCTCGTTTCTTAGTGAGTTCTAACTTGACG
ATTTTCGAAAAAATAGAAGCCTTTCAAGTGTTTTGACGCAAATTCGATTA
TTTTGCTACTGCAGGAGTTTCGAAAATTAAAAGTGACGTCAAAACCCGGG
CTCAAAACATTCGAAAAAGTCGTAAAGTGGAATAGACGTTAATTGCGCAA
AAAAAAACGCGGGTGACGTCTAGTACTAGTATAGGCTAGGTTTGATTTAG
TTGTGTCTAAAAGTGCCGTGCGCCGAGAACAAATGCTTCTTGTAAATTCA
TTATCCCTACCCCTTAAAAGCCTACCACGCCGCTAAGGGTTAATAGGTAT
ATTTATCTATTCGGTTTATTCTCAGGAACGTGAAAGACAAACTCGAAGAT
TGCGAGCAGGCGATCGAATCAAATCGATGAGTAAACGAATTCAATCGAAC
CAAGAAATCGATGACTGGCGATCCAAGGAAACTGCAAAACTTCAAATGGA
TAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021718-exon-sc0000393-1575043694:41667..42509 | TCONS_00021718-exon-sc0000393-1575043694:41667..42509 | Clytia hemisphaerica | exon |
| TCONS_00021718-exon-sc0000393-1575043694:41234..41374 | TCONS_00021718-exon-sc0000393-1575043694:41234..41374 | Clytia hemisphaerica | exon |
| TCONS_00021718-exon-sc0000393-1575043694:38813..38902 | TCONS_00021718-exon-sc0000393-1575043694:38813..38902 | Clytia hemisphaerica | exon |
| TCONS_00021718-exon-sc0000393-1575043694:34504..34634 | TCONS_00021718-exon-sc0000393-1575043694:34504..34634 | Clytia hemisphaerica | exon |
| TCONS_00021718-exon-sc0000393-1510915933:41667..42509 | TCONS_00021718-exon-sc0000393-1510915933:41667..42509 | Clytia hemisphaerica | exon |
| TCONS_00021718-exon-sc0000393-1510915933:41234..41374 | TCONS_00021718-exon-sc0000393-1510915933:41234..41374 | Clytia hemisphaerica | exon |
| TCONS_00021718-exon-sc0000393-1510915933:38813..38902 | TCONS_00021718-exon-sc0000393-1510915933:38813..38902 | Clytia hemisphaerica | exon |
| TCONS_00021718-exon-sc0000393-1510915933:34504..34634 | TCONS_00021718-exon-sc0000393-1510915933:34504..34634 | Clytia hemisphaerica | exon |
| TCONS_00021718-exon-sc0000393-1491911889:41667..42509 | TCONS_00021718-exon-sc0000393-1491911889:41667..42509 | Clytia hemisphaerica | exon |
| TCONS_00021718-exon-sc0000393-1491911889:41234..41374 | TCONS_00021718-exon-sc0000393-1491911889:41234..41374 | Clytia hemisphaerica | exon |
| TCONS_00021718-exon-sc0000393-1491911889:38813..38902 | TCONS_00021718-exon-sc0000393-1491911889:38813..38902 | Clytia hemisphaerica | exon |
| TCONS_00021718-exon-sc0000393-1491911889:34504..34634 | TCONS_00021718-exon-sc0000393-1491911889:34504..34634 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000393 | supercontig | sc0000393:34504..42509 - |
Blast
The following BLAST results are available for this feature:
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