|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021691 ID=TCONS_00021691|Name=TCONS_00021691|organism=Clytia hemisphaerica|type=transcript|length=2657bpRun BLAST on NCBI protein sequence of TCONS_00021691-protein >TCONS_00021691-protein ID=TCONS_00021691-protein|Name=TCONS_00021691-protein|organism=Clytia hemisphaerica|type=polypeptide|length=548bp MMRIKRYSHGFVSLPVIISSYEILMRDRQLLETYNIEWKFLIVDEGHRIKRun BLAST on NCBI transcript from alignment at sc0000393:74594..89491+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021691 ID=TCONS_00021691|Name=TCONS_00021691|organism=Clytia hemisphaerica|type=transcript|length=14898bp|location=Sequence derived from alignment at sc0000393:74594..89491+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000393:74594..89491+ >TCONS_00021691 ID=TCONS_00021691|Name=TCONS_00021691|organism=Clytia hemisphaerica|type=CDS|length=16470bp|location=Sequence derived from alignment at sc0000393:74594..89491+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00021691 vs. Swiss-Prot (Human)
Match: HELLS (Lymphoid-specific helicase OS=Homo sapiens GN=HELLS PE=1 SV=1) HSP 1 Score: 518.464 bits (1334), Expect = 1.107e-169 Identity = 283/521 (54.32%), Postives = 382/521 (73.32%), Query Frame = 3
Query: 90 IYTILYHGSIPERTELRRKMMRIKRYSHGFVSL-PVIISSYEILMRDRQLLETYNIEWKFLIVDEGHRIKNLNCRLIKELKLYKTANRLLLTGTPXXXXXXXXXXXXXXXXPDIFDDLNSFQTWFDFGAITDGGEDNEKLIEQENKDSVLQTLHSILTPFLLRRLKTDVDLTIPPKKEVYVYAPLTEKQQVFYRTTLDRTIMDMLEKNKKKQEEPVEYTASGRVKRKTASNITYKEEDDSQDIDIDLLFXXXXXXXXXXXXXXXXXXXXXXPKSLVNIKMQNTMMQLRKCCNHPYLLEYPFNPDNNELVINEDLVKVSGKMLVLDQMLPALRKRGHKVLIFSQMTTMLDIIGDYCGIRGYKYSRIDGTMGIKDRQQMIEDFAADEETFLFLLSTRAGGLGLNLMMADTCIIYDSDWNPQVDLQAQDRCHRIGQTRPVIIYRFVTANTIDQRIIERASSKRKLEKMIIHKKNFK-GQSATAIS-----PSELLDLLKSNDFSSSVDTGGH-VFTDEQLDRLL 1628
I T+LYHG+ ER +L R + + K G + + PV+I+S+EI MRDR L+ + WK+LIVDEGHRIKN+ CRLI+ELK + N+LLLTGTPLQNNLSELWSLLNFLLPD+FDDL SF++WFD ++++ ED +I +E + +VL LH ILTPFLLRRLK+DV L +PPK+EV VYAPL++KQ++FY ++RTI +M ++K E +E + +GR KR+T +I Y + DD + +++ L Q++ + +++ + +S VN+K+QN MM LRKCCNHPYL+EYP +P E I+E+LV SGK L+LD+MLP L+KRGHKVL+FSQMT+MLDI+ DYC +R + +SR+DG+M +R++ + F D E F+FL+STRAGGLG+NL ADT IIYDSDWNPQ DLQAQDRCHRIGQT+PV++YR VTANTIDQ+I+ERA++KRKLEK+IIHK +FK GQS +S P EL++LLKS D+ + V +D+ L+ LL
Sbjct: 297 IPTMLYHGTQEERQKLVRNIYKRK----GTLQIHPVVITSFEIAMRDRNALQ--HCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAED---IIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEK---ETIELSPTGRPKRRTRKSINYSKIDDFPN-ELEKLISQIQPEVDRERAVVEVNIPV---ESEVNLKLQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLNLSKNFLDPKELMELLKSRDYEREIKGSREKVISDKDLELLL 801 The following BLAST results are available for this feature:
BLAST of TCONS_00021691 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.