TCONS_00021691-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00021691-protein
Unique NameTCONS_00021691-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length548

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00021691-protein ID=TCONS_00021691-protein|Name=TCONS_00021691-protein|organism=Clytia hemisphaerica|type=polypeptide|length=548bp
MMRIKRYSHGFVSLPVIISSYEILMRDRQLLETYNIEWKFLIVDEGHRIK
NLNCRLIKELKLYKTANRLLLTGTPLQNNLSELWSLLNFLLPDIFDDLNS
FQTWFDFGAITDGGEDNEKLIEQENKDSVLQTLHSILTPFLLRRLKTDVD
LTIPPKKEVYVYAPLTEKQQVFYRTTLDRTIMDMLEKNKKKQEEPVEYTA
SGRVKRKTASNITYKEEDDSQDIDIDLLFEQMEEQERKKQEQELLMKQKL
KPKSLVNIKMQNTMMQLRKCCNHPYLLEYPFNPDNNELVINEDLVKVSGK
MLVLDQMLPALRKRGHKVLIFSQMTTMLDIIGDYCGIRGYKYSRIDGTMG
IKDRQQMIEDFAADEETFLFLLSTRAGGLGLNLMMADTCIIYDSDWNPQV
DLQAQDRCHRIGQTRPVIIYRFVTANTIDQRIIERASSKRKLEKMIIHKK
NFKGQSATAISPSELLDLLKSNDFSSSVDTGGHVFTDEQLDRLLDRSDMM
PGSSSPDDVGDQKKANVSHENDENNNNDISGNQNFKVIDITHGEKVEF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012173XLOC_012173Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00021691TCONS_00021691Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR000330SNF2_N
IPR014001Helicase_ATP-bd
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 225..245
NoneNo IPR availableGENE3D3.40.50.300coord: 286..450
e-value: 4.7E-35
score: 119.9
NoneNo IPR availableGENE3D3.40.50.10810coord: 11..130
e-value: 7.9E-29
score: 99.9
NoneNo IPR availableGENE3D3.30.930.10coord: 131..280
e-value: 6.3E-5
score: 22.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 496..535
NoneNo IPR availableCDDcd00079HELICccoord: 298..420
e-value: 9.63519E-30
score: 112.716
NoneNo IPR availableCDDcd00046DEXDccoord: 16..75
e-value: 7.9215E-10
score: 55.8064
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 329..412
e-value: 7.3E-21
score: 85.3
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 300..412
e-value: 3.0E-18
score: 66.1
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 303..453
score: 18.167
IPR000330SNF2-related, N-terminal domainPFAMPF00176SNF2_Ncoord: 15..276
e-value: 4.6E-38
score: 130.7
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 1..93
score: 15.52
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 14..144
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 259..472
coord: 147..186

Blast
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BLAST of TCONS_00021691-protein vs. Swiss-Prot (Human)
Match: HELLS (Lymphoid-specific helicase OS=Homo sapiens GN=HELLS PE=1 SV=1)

HSP 1 Score: 565.074 bits (1455), Expect = 0.000e+0
Identity = 278/494 (56.28%), Postives = 372/494 (75.30%), Query Frame = 0 
Query:   15 PVIISSYEILMRDRQLLETYNIEWKFLIVDEGHRIKNLNCRLIKELKLYKTANRLLLTGTPLQNNLSELWSLLNFLLPDIFDDLNSFQTWFDFGAITDGGEDNEKLIEQENKDSVLQTLHSILTPFLLRRLKTDVDLTIPPKKEVYVYAPLTEKQQVFYRTTLDRTIMDMLEKNKKKQEEPVEYTASGRVKRKTASNITYKEEDDSQDIDIDLLFEQME-EQERKKQEQELLMKQKLKPKSLVNIKMQNTMMQLRKCCNHPYLLEYPFNPDNNELVINEDLVKVSGKMLVLDQMLPALRKRGHKVLIFSQMTTMLDIIGDYCGIRGYKYSRIDGTMGIKDRQQMIEDFAADEETFLFLLSTRAGGLGLNLMMADTCIIYDSDWNPQVDLQAQDRCHRIGQTRPVIIYRFVTANTIDQRIIERASSKRKLEKMIIHKKNFK-GQSATAIS-----PSELLDLLKSNDFSSSVDTGGH-VFTDEQLDRLLDRSDMM 500
            PV+I+S+EI MRDR  L+  +  WK+LIVDEGHRIKN+ CRLI+ELK +   N+LLLTGTPLQNNLSELWSLLNFLLPD+FDDL SF++WFD  ++++  ED   +I +E + +VL  LH ILTPFLLRRLK+DV L +PPK+EV VYAPL++KQ++FY   ++RTI +M   ++K   E +E + +GR KR+T  +I Y + DD  + +++ L  Q++ E +R++   E+     +  +S VN+K+QN MM LRKCCNHPYL+EYP +P   E  I+E+LV  SGK L+LD+MLP L+KRGHKVL+FSQMT+MLDI+ DYC +R + +SR+DG+M   +R++ +  F  D E F+FL+STRAGGLG+NL  ADT IIYDSDWNPQ DLQAQDRCHRIGQT+PV++YR VTANTIDQ+I+ERA++KRKLEK+IIHK +FK GQS   +S     P EL++LLKS D+   +      V +D+ L+ LLDRSD++
Sbjct:  327 PVVITSFEIAMRDRNALQ--HCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAED---IIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEK---ETIELSPTGRPKRRTRKSINYSKIDDFPN-ELEKLISQIQPEVDRERAVVEV----NIPVESEVNLKLQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLNLSKNFLDPKELMELLKSRDYEREIKGSREKVISDKDLELLLDRSDLI 807
The following BLAST results are available for this feature:
BLAST of TCONS_00021691-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HELLS0.000e+056.28Lymphoid-specific helicase OS=Homo sapiens GN=HELL... [more]
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