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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021687 ID=TCONS_00021687|Name=TCONS_00021687|organism=Clytia hemisphaerica|type=transcript|length=1050bp
cagtttttatcttaaacacccgactgctCGCTCGTTCCTGCTTTCGTCTT
TATGTCACAGAATGTCTTCACCTCCAATTCAGATAAGAAATGGGTGAAAC
GATAGAAAGCGTAAACcaaccaaaagaaaaagaattgatatgTACAAAAT
TTCCAGCTGGTAAAGTTGAATGTACCAATGATAGCTCTACCGATAGTGAG
GATGCTCAGATAGTACCAGATGTTGACCATTCAccatcaaaacaaatcaa
agatgATCATAAAGAGGGCGTTTCCTCACCTGAAGGAAATGTTGAAATGT
ATAACATGAAGTGTGATGAAAAGGTTCCCACAAAAGACTGCAAGAATGAG
CAGGTCAATTTATCAAAAAACATTGTTACATCTAAGGATCATCAAGAAAA
AGATTGTGGATTAAAAAATACAGATGTTAAAGGCCAAGATTTTGAGCAAC
CAATAGATTCATCTGACAAGTCCAAGGAATTGAATTCTAAAAACACTAGC
AATGAAACTTCAAACACTGATAACATTTCTTCTAAGAATTTGTTAAACGT
TACATCAGATATAGCTAATAATTCTTCAGAAGGAATGGACAAAAAGCCTG
AGGAAACTAGTTCAAAGCAAGGAAATGTGAATGAGGATGCTGTAAAAGCA
GAACCAAAATTTGGATTGACTGTTGAAATGATTGAGGAAGAAGAAAAGTT
GAAGCAAGAACAAGAAAAGCAGTTagatgaaatcaaaaataagGCATTGC
AAGAGCTAAACAGCACTGGCCAAAAGCAAAGGTTTGATCGTCTTCAAGTA
CTATTAAGTCGTTCACAAATGTACTCTACATATATTTTGGGTCGTTTAAA
TTCACGAAGAGAAGCAGAGAAAAAGAGGCTTGAAAGGGTAGATaagaatg
aaaagaagaaaaaagagttcgaaaacaaagaaagcgacCCTAAAAATGAA
ACTCAAGACAAAGAGGAAAAGGATTCGAAAGCAGATGGTGAAAGTAAATT
TTCAAGaggaaaacgaaaaagaaaatctcTTCCAAAAGATGAGCAGGTAT Run BLAST on NCBI protein sequence of TCONS_00021687-protein >TCONS_00021687-protein ID=TCONS_00021687-protein|Name=TCONS_00021687-protein|organism=Clytia hemisphaerica|type=polypeptide|length=320bp
MGETIESVNQPKEKELICTKFPAGKVECTNDSSTDSEDAQIVPDVDHSPS
KQIKDDHKEGVSSPEGNVEMYNMKCDEKVPTKDCKNEQVNLSKNIVTSKD
HQEKDCGLKNTDVKGQDFEQPIDSSDKSKELNSKNTSNETSNTDNISSKN
LLNVTSDIANNSSEGMDKKPEETSSKQGNVNEDAVKAEPKFGLTVEMIEE
EEKLKQEQEKQLDEIKNKALQELNSTGQKQRFDRLQVLLSRSQMYSTYIL
GRLNSRREAEKKRLERVDKNEKKKKEFENKESDPKNETQDKEEKDSKADG
ESKFSRGKRKRKSLPKDEQV Run BLAST on NCBI transcript from alignment at sc0000393:70350..72948+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021687 ID=TCONS_00021687|Name=TCONS_00021687|organism=Clytia hemisphaerica|type=transcript|length=2599bp|location=Sequence derived from alignment at sc0000393:70350..72948+ (Clytia hemisphaerica)
cagtttttatcttaaacacccgactgctCGCTCGTTCCTGCTTTCGTCTT
TATGTCACAGAATGTCTTCACCTCCAGTAAGtataaaactttatatattt
tttgtacaaaatgtttttcattagAGTATTATGTCAGTACAGTGTATCAA
AAAATCCTGTGGGTTGGTTTTTCTGACCTTATTATactcttttttttcaa
tgtttaatTAGCAAGGGCAGCTTTATTGGCCCAGTTAGCGAAAAAGGCCT
TCAAATAGTGTCTGTGGTATGTGGTTTGTGGTTCGGTTCGCCAAAAGTTT
TTGCAATAACAGCGTCTTGattgttttttcaatttcataattcttgatag
acagtgatataccttttggtaattagttcttacaaagtaaacaagggacg
ccgtacaatatgagcatattcatttttcttataagcatttaatctataag
aatcaaatcaataactcttgatagacagtgatataccttttggtaattag
ttcttacaaagtaaacaagggacggcgtacaatatgagcatatttatttt
tcttataagcatatactttataagaatcaaatcaataactcttgataaca
TTGATAAACCTTTTGgtaattaattcttacaaagtaaacaagggatggtg
tGCAATATtcgagcatatttatttttcttgtaagcatatactttataaga
atcaaatcaataactcttgatagacagtgatataccttttggtaattagt
tcttacaaagtaaacaaggtacggcgcacaatatgagcatatttattttt
cttataagcatatactttataagagtcaaatcaataactcttgataacgT
TGATAAACCTTTTGgtaattaattcttacaaagtaaacaagggatggtgt
GCAATATtcgagcatattcatttttcttgtaagcatatactttataagaa
tcaaatcaataactcttgatagacagtgatataccttttggtaattactt
cttacaaagtaaacaagggacggcgcatgCTCTCAGGTTTTTGCTATCTT
CATTGTTGATATTTTGTAATTACAGATTCAGATAAGAAATGGGTGAAACG
ATAGAAAGCGTAAACcaaccaaaagaaaaagaattgatatgTACAAAATT
TCCAGCTGGTAAAGTTGAATGTACCAATGATAGCTCTACCGATAGTGAGG
ATGCTCAGATAGTACCAGATGTTGACCATTCAccatcaaaacaaatcaaa
gatgATCATAAAGAGGGCGTTTCCTCACCTGAAGGAAATGTTGAAATGTA
TAACATGAAGTGTGATGAAAAGGTTCCCACAAAAGACTGCAAGAATGAGC
AGGTCAATTTATCAAAAAACATTGTTACATCTAAGGATCATCAAGAAAAA
GATTGTGGATTAAAAAATACAGATGTTAAAGGCCAAGATTTTGAGCAACC
AATAGATTCATCTGACAAGTCCAAGGAATTGAATTCTAAAAACACTAGCA
ATGAAACTTCAAACACTGATAACATTTCTTCTAAGAATTTGTTAAACGTT
ACATCAGATATAGCTAATAATTCTTCAGAAGGAATGGACAAAAAGCCTGA
GGAAACTAGTTCAAAGCAAGGAAATGTGAATGAGGATGCTGTAAAAGCAG
AACCAAAATTTGGATTGACTGTTGAAATGATTGAGGAAGAAGAAAAGTTG
AAGCAAGAACAAGAAAAGCAGTTagatgaaatcaaaaataagGTCTGTTT
AAATAATTCTCTATTATTAAACATATCTAGCAAAAAAATGCTGCAATTGA
ACGAGTTTTTGAAGCAATGTCTATGAATAAGGTAAACATTTTCGTTCACT
GGAACTGAAAATTTTGTCTGAAAATAGTTGGTGGTTAAGGGCGTTAAGTG
TTATTTTAACttatattgaattttgaagcaACTTGcaggattttgcaatt
ttgcaattTGTTGTTGAACATTGCTGCAAGAATGGCTTTTGGAAAGCTAT
TAGTTTTAATCTTAAGCCATCTTTATCTCTAGGCATTGCAAGAGCTAAAC
AGCACTGGCCAAAAGCAAAGGTTTGATCGTCTTCAAGTACTATTAAGTCG
TTCACAAATGTACTCTACATATATTTTGGGTCGTTTAAATTCACGAAGAG
AAGCAGAGAAAAAGAGGCTTGAAAGGGTAGATaagaatgaaaagaagaaa
aaagagttcgaaaacaaagaaagcgacCCTAAAAATGAAACTCAAGACAA
AGAGGAAAAGGTAAACATTTCTTCGACGAGATTTACACATACTTATCATT
ATCTCTGGCTTAAGTTAGTTATTTTTTCTCATTGCTTGCCAAATGATGAG
AAGAGTTGTTTTGACTTGGTAAATGACCATGTATGAAACGATAAACACAC
TAATCTTCTCTCTGATGGCCaaaaatggaaacaaaaaaattcctaGATAT
TACCCCATGAGTTTGTTGATAAAGAAAGATCTGCTTCACAAATGAACAGC
TTCATTGCATTCTATTAAAGGATTCGAAAGCAGATGGTGAAAGTAAATTT
TCAAGaggaaaacgaaaaagaaaatctcTTCCAAAAGATGAGCAGGTAT Coding sequence (CDS) from alignment at sc0000393:70350..72948+ >TCONS_00021687 ID=TCONS_00021687|Name=TCONS_00021687|organism=Clytia hemisphaerica|type=CDS|length=2880bp|location=Sequence derived from alignment at sc0000393:70350..72948+ (Clytia hemisphaerica)
ATGGGTGAAACGATAGAAAGCGTAAACcaaccaaaagaaaaagaattgat
atgTACAAAATTTCCAGCTGGTAAAGTTGAATGTACCAATGATAGCTCTA
CCGATAGTGAGGATGCTCAGATAGTACCAGATGTTGACCATTCAccatca
aaacaaatcaaagatgATCATAAAGAGGGCGTTTCCTCACCTGAAGGAAA
TGTTGAAATGTATAACATGAAGTGTGATGAAAAGGTTCCCACAAAAGACT
GCAAGAATGAGCAGGTCAATTTATCAAAAAACATTGTTACATCTAAGGAT
CATCAAGAAAAAGATTGTGGATTAAAAAATACAGATGTTAAAGGCCAAGA
TTTTGAGCAACCAATAGATTCATCTGACAAGTCCAAGGAATTGAATTCTA
AAAACACTAGCAATGAAACTTCAAACACTGATAACATTTCTTCTAAGAAT
TTGTTAAACGTTACATCAGATATAGCTAATAATTCTTCAGAAGGAATGGA
CAAAAAGCCTGAGGAAACTAGTTCAAAGCAAGGAAATGTGAATGAGGATG
CTGTAAAAGCAGAACCAAAATTTGGATTGACTGTTGAAATGATTGAGGAA
GAAGAAAAGTTGAAGCAAGAACAAGAAAAGCAGTTagatgaaatcaaaaa
taagGCATTGCAAGAGCTAAACAGCACTGGCCAAAAGCAAAGGTTTGATC
GTCTTCAAGTACTATTAAGTCGTTCACAAATGTACTCTACATATATTTTG
GGTCGTTTAAATTCACGAAGAGAAGCAGAGAAAAAGAGGCTTGAAAGGGT
AGATaagaatgaaaagaagaaaaaagagttcgaaaacaaagaaagcgacC
CTAAAAATGAAACTCAAGACAAAGAGGAAAAGGATTCGAAAGCAGATGGT
GAAAGTAAATTTTCAAGaggaaaacgaaaaagaaaatctcTTCCAAAAGA
TGAGCAGGTAATGGGTGAAACGATAGAAAGCGTAAACcaaccaaaagaaa
aagaattgatatgTACAAAATTTCCAGCTGGTAAAGTTGAATGTACCAAT
GATAGCTCTACCGATAGTGAGGATGCTCAGATAGTACCAGATGTTGACCA
TTCAccatcaaaacaaatcaaagatgATCATAAAGAGGGCGTTTCCTCAC
CTGAAGGAAATGTTGAAATGTATAACATGAAGTGTGATGAAAAGGTTCCC
ACAAAAGACTGCAAGAATGAGCAGGTCAATTTATCAAAAAACATTGTTAC
ATCTAAGGATCATCAAGAAAAAGATTGTGGATTAAAAAATACAGATGTTA
AAGGCCAAGATTTTGAGCAACCAATAGATTCATCTGACAAGTCCAAGGAA
TTGAATTCTAAAAACACTAGCAATGAAACTTCAAACACTGATAACATTTC
TTCTAAGAATTTGTTAAACGTTACATCAGATATAGCTAATAATTCTTCAG
AAGGAATGGACAAAAAGCCTGAGGAAACTAGTTCAAAGCAAGGAAATGTG
AATGAGGATGCTGTAAAAGCAGAACCAAAATTTGGATTGACTGTTGAAAT
GATTGAGGAAGAAGAAAAGTTGAAGCAAGAACAAGAAAAGCAGTTagatg
aaatcaaaaataagGCATTGCAAGAGCTAAACAGCACTGGCCAAAAGCAA
AGGTTTGATCGTCTTCAAGTACTATTAAGTCGTTCACAAATGTACTCTAC
ATATATTTTGGGTCGTTTAAATTCACGAAGAGAAGCAGAGAAAAAGAGGC
TTGAAAGGGTAGATaagaatgaaaagaagaaaaaagagttcgaaaacaaa
gaaagcgacCCTAAAAATGAAACTCAAGACAAAGAGGAAAAGGATTCGAA
AGCAGATGGTGAAAGTAAATTTTCAAGaggaaaacgaaaaagaaaatctc
TTCCAAAAGATGAGCAGGTAATGGGTGAAACGATAGAAAGCGTAAACcaa
ccaaaagaaaaagaattgatatgTACAAAATTTCCAGCTGGTAAAGTTGA
ATGTACCAATGATAGCTCTACCGATAGTGAGGATGCTCAGATAGTACCAG
ATGTTGACCATTCAccatcaaaacaaatcaaagatgATCATAAAGAGGGC
GTTTCCTCACCTGAAGGAAATGTTGAAATGTATAACATGAAGTGTGATGA
AAAGGTTCCCACAAAAGACTGCAAGAATGAGCAGGTCAATTTATCAAAAA
ACATTGTTACATCTAAGGATCATCAAGAAAAAGATTGTGGATTAAAAAAT
ACAGATGTTAAAGGCCAAGATTTTGAGCAACCAATAGATTCATCTGACAA
GTCCAAGGAATTGAATTCTAAAAACACTAGCAATGAAACTTCAAACACTG
ATAACATTTCTTCTAAGAATTTGTTAAACGTTACATCAGATATAGCTAAT
AATTCTTCAGAAGGAATGGACAAAAAGCCTGAGGAAACTAGTTCAAAGCA
AGGAAATGTGAATGAGGATGCTGTAAAAGCAGAACCAAAATTTGGATTGA
CTGTTGAAATGATTGAGGAAGAAGAAAAGTTGAAGCAAGAACAAGAAAAG
CAGTTagatgaaatcaaaaataagGCATTGCAAGAGCTAAACAGCACTGG
CCAAAAGCAAAGGTTTGATCGTCTTCAAGTACTATTAAGTCGTTCACAAA
TGTACTCTACATATATTTTGGGTCGTTTAAATTCACGAAGAGAAGCAGAG
AAAAAGAGGCTTGAAAGGGTAGATaagaatgaaaagaagaaaaaagagtt
cgaaaacaaagaaagcgacCCTAAAAATGAAACTCAAGACAAAGAGGAAA
AGGATTCGAAAGCAGATGGTGAAAGTAAATTTTCAAGaggaaaacgaaaa
agaaaatctcTTCCAAAAGATGAGCAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021687-exon-sc0000393-1491911889:70350..70425 | TCONS_00021687-exon-sc0000393-1491911889:70350..70425 | Clytia hemisphaerica | exon |
| TCONS_00021687-exon-sc0000393-1510915933:70350..70425 | TCONS_00021687-exon-sc0000393-1510915933:70350..70425 | Clytia hemisphaerica | exon |
| TCONS_00021687-exon-sc0000393-1575043694:70350..70425 | TCONS_00021687-exon-sc0000393-1575043694:70350..70425 | Clytia hemisphaerica | exon |
| TCONS_00021687-exon-sc0000393-1491911889:71425..72091 | TCONS_00021687-exon-sc0000393-1491911889:71425..72091 | Clytia hemisphaerica | exon |
| TCONS_00021687-exon-sc0000393-1510915933:71425..72091 | TCONS_00021687-exon-sc0000393-1510915933:71425..72091 | Clytia hemisphaerica | exon |
| TCONS_00021687-exon-sc0000393-1575043694:71425..72091 | TCONS_00021687-exon-sc0000393-1575043694:71425..72091 | Clytia hemisphaerica | exon |
| TCONS_00021687-exon-sc0000393-1491911889:72382..72609 | TCONS_00021687-exon-sc0000393-1491911889:72382..72609 | Clytia hemisphaerica | exon |
| TCONS_00021687-exon-sc0000393-1510915933:72382..72609 | TCONS_00021687-exon-sc0000393-1510915933:72382..72609 | Clytia hemisphaerica | exon |
| TCONS_00021687-exon-sc0000393-1575043694:72382..72609 | TCONS_00021687-exon-sc0000393-1575043694:72382..72609 | Clytia hemisphaerica | exon |
| TCONS_00021687-exon-sc0000393-1491911889:72870..72948 | TCONS_00021687-exon-sc0000393-1491911889:72870..72948 | Clytia hemisphaerica | exon |
| TCONS_00021687-exon-sc0000393-1510915933:72870..72948 | TCONS_00021687-exon-sc0000393-1510915933:72870..72948 | Clytia hemisphaerica | exon |
| TCONS_00021687-exon-sc0000393-1575043694:72870..72948 | TCONS_00021687-exon-sc0000393-1575043694:72870..72948 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000393 | supercontig | sc0000393:70350..72948 + |
Blast
The following BLAST results are available for this feature:
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