TCONS_00021642 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021642
Unique NameTCONS_00021642
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length276

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021642 ID=TCONS_00021642|Name=TCONS_00021642|organism=Clytia hemisphaerica|type=transcript|length=276bp
GGGTGAGTTTAATATTATTTGATCGTTTGTTTTTATGTCGGTAAGTAAGG
TTTCAGGAGGGGGATGGATAACAATTTGCTTTATGCTTTATGAATTTTAG
AgttggatgaaaattttttaaatggtgCATGTTGAATGGCATGTTAGATG
CAACTGAAAGgtatgaatttttatttttactattttttgtctgtttataC
CTATTCTTGTTAAGTGTGAGTTGaggtatatatATTTTTATGTTCGTTTT
ATTCGTCTGAAAGGGAGATACGGAAG
Run BLAST on NCBI

transcript from alignment at sc0000391:213209..220075+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021642 ID=TCONS_00021642|Name=TCONS_00021642|organism=Clytia hemisphaerica|type=transcript|length=6867bp|location=Sequence derived from alignment at sc0000391:213209..220075+ (Clytia hemisphaerica)
GGGTGAGTTTAATATTATTTGATCGTTTGTTTTTATGTCGGTAAGTAAGG
TTTCAGGAGGGGGATGGATAACAATTTGCTTTATGCTTTATGAATTTTAG
AgttggatgaaaattttttaaatggtgCATGTTGAATGGCATGTTAGATG
CAACTGAAAGgtatgaatttttatttttactattttttgtctgtttataC
CTATTCTTGTTAAGTGTGAGTTGaggtatatatatttttatattcgTTTT
ATTCGTCTGAAAGAGAGATACGGAAGGGGGGTGTTTATGGTTTATTGACT
TTAGAATTATGGATAATTTCGACCATATGACAGCTTCagtaaaaacaaga
taaaacttaatccgaaaattgattttgccatGGATCAATGTGGAGTCAGA
TCACAAACAACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTTT
GTTGTGAAGCGAaatattagttttttcaaaaaatgaaaattttgttgttt
gtgatctGACTCCACATTGATCCatggcaaaatcaattttcggattAAAT
TATGGATAAAATATGATAAATGTTGCAAATTGAGTAGAGTGGTGAATGTA
ACTAAGAGGtatgaaattttatttcaaatgccTATGGTATTTTTTGTACC
TTGTCGTCAAGCGTGACTACtacgtgtttttatttttgattattcATTCT
TTATTTTGCATTGGAGGTTTGAGAGGGGAGGTAGTTAACGATTTATTTTC
ATTCTATATTAATTTTAGAGTTagataaaatattatatatgTTGCAACTT
GAGTGTTGAATTCAATTAAGAGGTatgaaatttaatttcaattgtttttg
gTCTCTTTGTACCTTGTCGTCAAGCGTGACTACTACGTATTTCTacaggg
ggggtcagtgtaccagaaggtggcatgtatcctggggtgggtgggtgttt
gagaaaaaaatttgtcatgtactacctgtgtactataattggggtgttgg
gtccaaaaatgattttgatttttactacctgtgtaccaaaataggggtgt
tgggtccaacaTCGAttctgatttttactacctgtgtaccaaaatagagg
tgttgggtccaaaatcgattttgatttttactacctgtgtaccaaaataa
aggtgttgggtccaaaatcgatatCAACGGTATGGAAACAAAAAGGCTCA
GAAATTAtttgctaaaatagaaatgtaaagttgttctattataaattgat
caagccaagtttgtccaagatcattcttccaaacttttttgaattaattG
AAATCCTACCAGATCCCACTAAAATGAAGGTTTAgagtcaatgtaaacat
tcgagCATTGTAATTCAAACATTCGAACAtcagaggtgccaactctcacg
cattgagTGTGAGACTCAAGCATTTCCCCATggtctcacgcaatttttga
aaagtttgatttctcacgcattttggattttttaaaagaattttcctgtt
tttccgatttttggaaaaaagttttcccgatttgacgattttccgaaaaa
agtttccccgatttcctgatttttggaaaaaatgtttacccagttttcag
attttttccaGGTAGTAACCGGTAGTAAatggggggtatggggtggtttt
gttttttttacaggtACTACCTGGTAGTAAATAGGGGGTATTGggtggtt
ttgggatttttccatgtagtatagtgtacttcaggggtgggtgggtgtca
agttttgaaaaataccttgtagtacacatacatgccgcCTTCTAGTACNG
TAGTATAgtgtacttcaggggtgggtgggtgtcaagttttgaaaaatacc
ttgtagtacacatacatgccgccttctagtacactgaccccccctggTTT
CTATTATTTAGATTattcattctttattttttgcatGGGAGGTTTGAGAG
GGGGTGTTTAACGATTTATTTTCATGCTATATTAATTTTAGAGTTAAAAT
ATATAATATCATAAATGTTGCAATTTGAGTGGAGTAGTGAATTCAACTAA
GAGgtaagaaattttatttcaattgcTTATGATTTGTTTGTACTTTGTCG
TCAAGCTTGACTGCTATGTTATTTGATTTTGAGTATCCATTCTTTTATTC
CACAAGATAGATTTTAGAAAGGGGATAGTTAAcgatttatttttattctt
tatgaatTTTAGAGTTTCATAAAACTATAAGAATGTCTCAAgttgaatgc
aatggtggaagtAAGAGGTACGATTCTTTAtgttcaatttcaaattcaag
ttgaatttttgttgttctgtttGTATCTTGTCTTTTGACGTTGACCTGTC
TGACTTTTTATTACCTATTATTTTTGTCTGTAAGGGTGGtttcagatttt
tcagatttttcggATATGGATTGGTTTTACCGATCCTCCTTTAGTTTTCT
TAAGATTGAGTCGTGTATTTGTTTGACTATTCATTCTATACGTCGGTAGG
GATAGTTTCAGGAGGGGACAAGATAACAATTCGCTTTCATGCTATATTGA
TTTTAGAGTTAGATAAAGTATAATGTTGCAACTTGAGTGCAGTGATGAAT
TCAACTAAAAAGTatgcaattttatttcaattggTTATGATCTGTTTTTA
CCTTGTGCTCAAGCGTGACTgctatgttttttcttttattttatctattc
TTTTATTCCGCACGATGGGTTTTAGAGGGGGGATAGTTAACgatttattt
tcattctttaCCAATTTTAGAGTTTTACAAAACTACTAGGAATGTCTTAA
gttgaatgcaatggtggaagtAAGAGGTATGGTtctttatgttcaatttt
tgttgttttgtttgtaTCTCGTCTTTTGACGTTGACCTGTCTGACTTTTT
ATTACCTATTATTTTTGTCTGTAAGGGTGGTTTCAGATGTTTCAGATATG
GATTGGTTGTTACCGATTCTCCTTTAGTTTTCTTAAGATTGAGTCGTGTA
CTTGTTTGACTATTCATTCTACATGTCGGTAAGGGTAGTTTTAGGAGGGG
ATTAGATAACAATTCGCTTTCATGCTTTATGAATTTTAGAGTNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGGTGCATGTTGAATGGCA
TGTTAGATGCAACTGAAAGgtatgaatttttatttttactattttttgtc
tgtttataCCTATTCTTGTTCAGTGTCAGTTGAGGTATTCATATTTTTAT
GTTCGTTTTATTCGTCTGAAAGGGAGATACGGAAGGGGGTGTTTATGGTT
TATTGACTTTAGAATTATGGATAAAATATGATAAATGTTGCAAATTGAGT
GGAGTGGTGAATGTAACTAAGAGGtatgaaattttatttcaaatgctTAT
GGTATTTTTTTTACCTTGTCGTCAAGCGTGACTACtgcgtgtttttattt
ttgattattcATTCTTTATTTTGCATTGGAGGTTTGAGAGGGGAGGTAGT
TAACGATTTATTTTCATTCTATATTAATTTTAGAGTTagataaaatattg
taaatgtTGCAACTTGAGTGGAGTGTTTGAATACAACTAAGAGgtaagaa
attttatttcaaatgtttttggTCTGTTTGTACATTGTCGTCAAGCGTGA
CTACtacgtgtttttatttttgattattcATTCTTTATTTTGCATTGGAG
GTTTGAGAGGGGGTAGTTAACGATTTATTTTCATGCTATATTGATTTTAA
AGTTAGATAAAATATAATGTTGCAACTTGAGTGCAGTGATGAATTCAACT
AAAAGGTATgcaattttatttcaagaatGTCTCAAgttgaatgcaatggt
ggaagtAAGAGGTATGGTtctttatgttcaatttttgttgtttctttgtA
TCTCGTCTTTTTACGTTGACCTATCTGACTTTTTATTACCTATTATTTTT
GTCTGTAAGGGTGGTCTCAGATGTTTCAGATATGGATTGGTTTTACCGAT
TCTCCTTTAGTTTTCTTAAGATTGAGTCGTGTATTTGTTTGACTATTCAT
TCTATATGTCGGTAAGGGAGGTTTCACGAGGGGGCTAGATAACAATTCGC
TTTCATGATTTATGAATTTTAGAGttagataaaataaaacaattaaaagT
TGAATGGAAATGTGGATAGAAGTAAGAGGTATGATTctttttatgttcaa
tttctttgttttgtttggaTCTAGTCTTGATGTCTTTTTCAGAAGATTCA
TTATTTTGTCTGCAAGGGAGGTTGCAGAGGGGGGGGGGATGGTTACCGAT
TTGCTTTCAAACTTTATTAATTTTAGACTTAGAGAAAATATTATGAATGC
TATATAAGTTGAATGATATGGTAGATGCAAATAAAAGGTATGagtcttta
ttttcattatctATGGTATGTTTGGACCTAGTCTTTTTGAGGGTGAGTTT
AATATTATTTGATCGTTTGTTTTTATGTCGGTAAGTAAGGTTTCAGGAGG
GGGATGGATAACAATTTGCCTTATGCTTTATGAATTTTAGAgttggatga
aaatttttttaaatggtgcATGTTGAATTGCATGTTAGATGCAACTGAAA
GgtatgaatttttatttttactattttttgtctgtttataCATATTCTTG
TTAAGTGTGTGTTGAGGTATATACATTTTTATGTTCGTTTTATTCGTCTG
AAAGGGAGATACGGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012135XLOC_012135Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021642-exon-sc0000391-1491911889:213209..213441TCONS_00021642-exon-sc0000391-1491911889:213209..213441Clytia hemisphaericaexon
TCONS_00021642-exon-sc0000391-1510915933:213209..213441TCONS_00021642-exon-sc0000391-1510915933:213209..213441Clytia hemisphaericaexon
TCONS_00021642-exon-sc0000391-1575043694:213209..213441TCONS_00021642-exon-sc0000391-1575043694:213209..213441Clytia hemisphaericaexon
TCONS_00021642-exon-sc0000391-1491911889:220033..220075TCONS_00021642-exon-sc0000391-1491911889:220033..220075Clytia hemisphaericaexon
TCONS_00021642-exon-sc0000391-1510915933:220033..220075TCONS_00021642-exon-sc0000391-1510915933:220033..220075Clytia hemisphaericaexon
TCONS_00021642-exon-sc0000391-1575043694:220033..220075TCONS_00021642-exon-sc0000391-1575043694:220033..220075Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000391supercontigsc0000391:213209..220075 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021642 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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