|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021634 ID=TCONS_00021634|Name=TCONS_00021634|organism=Clytia hemisphaerica|type=transcript|length=1852bp
aaatcttaTAACTTTTGAGCCAGTTTGAGCTTTGAATTTATCTATCATTT
CAGATCATTTAGGAATTTGGTGACTACACCTGCCTCAAATTTGGCAATGA
CTATACTATTTCCCTTCATCTTTAGATTGAATTATTCTGCTTACTTTCTG
TTCATAGAATTATCTTCCTGAAATGAagatctttatttattttttgttta
cttgtttacTTTTCTTTATTTCAGTTTTAAACAAATATGAATGCCAGGTC
CCAGGTTTTTGAATTCAGTGCTGAATTATGTCAAGTAGAAGAAGTTGTCT
GTAGCTTTCTTCATACTTTGCTGTTCCATCGGTCAacaggaaaatttcat
tatcaGAAGGAAGGATCCTACACCGTAGGTACAATTGGTTATGAAGATGT
AGATTGTCACTTCATTGATTGTTCATATGTACGCTGCTCCAGTGAAAAGC
TTAACAAAACTGTATTATCTTACGCAAAACAGTTCAAAGATGCCTTGAAA
AATATGGAAAGTCATCGTAGCGGTCAAGTTTCTTTTGAGTTTTACCAAAA
GCGCAAGAATCCTTGGCCATTTCCGACGGAATCAATACCATGGGAAATGT
GGGTTTTGAAAATCAATATCGTAACTGTGACCAACGATGTAGACAGGGTT
GCTTTACGAGAAAAGTTGACGGATGCTGTGTGTGAGAAAATCAGAGTGAT
TTGTGAGATTATCAACAAGCCTGATTATATTCCCAAAATGCCAAACGAGC
CTGATTTGACCAATATTTTTGACAACCAGTATACTGATGTTCAGCcatat
ttacacaaattccaCTTCCAAACATCAGAACATGCTTCAGATACCAGTGT
TGGTAACACGATGAGACGATTGATCAAAGATACCTTCAACTACTAATCTA
GGTTGACTGATTGCATTTTCCAACTAGCtgaaagatgtattttgtttcAT
ACACAAGATTGTTTCTACCATTTCTTATTGAATATATTAAATGCTTTTTC
AATTTAATTCTTTCATAAACTTTTACCACATTTCAAATTTGACTAAATGT
CCAATAAGGGGTTGCCTTAGcttaaaaattatgatttttaggTTTGACAA
GGAACAGTTTACTTAGGTTGGACCCCTGAAACCCCTGCAAGTTGTTCTAC
aaagaaagttatgaaaatgatACTAAGCTAAAGCTTTTCAATTTATGAAG
CTTTATTGCTTAAGAAGCAAATTTGGTGTCTTTTCTGGGAGAGTCCTTGC
TTAAGTTAGGAAAGTGTTTCGTTTAATAGAAACAATATTTTATCCAAGGT
AGATCaacaattttttgtaagcaaccgtttttatttatattttgagtGGT
TATTTGAGCGTAAggaattcttttcttttaatttattataGTTTTTACTT
TATTTCAGCTCTATTTAAATAATACAGTAAAATTGTTGCTTCCAAAAAGC
TTTCATGTTCATAATTTGAAAGATTGAAAACTTTCTCAGAATAATTATAT
GGCATATAATCTTGATAGAATTTTTTCTACATTCTATACACCTAATAACC
TTCCTACAAAGAGCTGTATGAAAATGAATTCAGGAAGTGATCATCTTAAT
AATATTGAcatattcaaaatattgatcCTCATTTGATCTTAGGGTTGATG
AATATGTGTAATCTAATATTGAACggtaaaagtaatttttatatTATTAT
CAGACATATTGAATTGCttttaaatttgtaaataacATTTTGTTGTAAAC
TCATGTTGAtaatatgtaaatttttgaattatatCACTAAAATTATGACA
AGATTTTAAACCTTTTCCTGattaaaatcttcttaaaaacTCTTATTACT
AT Run BLAST on NCBI transcript from alignment at sc0000391:79916..81767+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021634 ID=TCONS_00021634|Name=TCONS_00021634|organism=Clytia hemisphaerica|type=transcript|length=1852bp|location=Sequence derived from alignment at sc0000391:79916..81767+ (Clytia hemisphaerica)
aaatcttaTAACTTTTGAGCCAGTTTGAGCTTTGAATTTATCTATCATTT
CAGATCATTTAGGAATTTGGTGACTACACCTGCCTCAAATTTGGCAATGA
CTATACTATTTCCCTTCATCTTTAGATTGAATTATTCTGCTTACTTTCTG
TTCATAGAATTATCTTCCTGAAATGAagatctttatttattttttgttta
cttgtttacTTTTCTTTATTTCAGTTTTAAACAAATATGAATGCCAGGTC
CCAGGTTTTTGAATTCAGTGCTGAATTATGTCAAGTAGAAGAAGTTGTCT
GTAGCTTTCTTCATACTTTGCTGTTCCATCGGTCAacaggaaaatttcat
tatcaGAAGGAAGGATCCTACACCGTAGGTACAATTGGTTATGAAGATGT
AGATTGTCACTTCATTGATTGTTCATATGTACGCTGCTCCAGTGAAAAGC
TTAACAAAACTGTATTATCTTACGCAAAACAGTTCAAAGATGCCTTGAAA
AATATGGAAAGTCATCGTAGCGGTCAAGTTTCTTTTGAGTTTTACCAAAA
GCGCAAGAATCCTTGGCCATTTCCGACGGAATCAATACCATGGGAAATGT
GGGTTTTGAAAATCAATATCGTAACTGTGACCAACGATGTAGACAGGGTT
GCTTTACGAGAAAAGTTGACGGATGCTGTGTGTGAGAAAATCAGAGTGAT
TTGTGAGATTATCAACAAGCCTGATTATATTCCCAAAATGCCAAACGAGC
CTGATTTGACCAATATTTTTGACAACCAGTATACTGATGTTCAGCcatat
ttacacaaattccaCTTCCAAACATCAGAACATGCTTCAGATACCAGTGT
TGGTAACACGATGAGACGATTGATCAAAGATACCTTCAACTACTAATCTA
GGTTGACTGATTGCATTTTCCAACTAGCtgaaagatgtattttgtttcAT
ACACAAGATTGTTTCTACCATTTCTTATTGAATATATTAAATGCTTTTTC
AATTTAATTCTTTCATAAACTTTTACCACATTTCAAATTTGACTAAATGT
CCAATAAGGGGTTGCCTTAGcttaaaaattatgatttttaggTTTGACAA
GGAACAGTTTACTTAGGTTGGACCCCTGAAACCCCTGCAAGTTGTTCTAC
aaagaaagttatgaaaatgatACTAAGCTAAAGCTTTTCAATTTATGAAG
CTTTATTGCTTAAGAAGCAAATTTGGTGTCTTTTCTGGGAGAGTCCTTGC
TTAAGTTAGGAAAGTGTTTCGTTTAATAGAAACAATATTTTATCCAAGGT
AGATCaacaattttttgtaagcaaccgtttttatttatattttgagtGGT
TATTTGAGCGTAAggaattcttttcttttaatttattataGTTTTTACTT
TATTTCAGCTCTATTTAAATAATACAGTAAAATTGTTGCTTCCAAAAAGC
TTTCATGTTCATAATTTGAAAGATTGAAAACTTTCTCAGAATAATTATAT
GGCATATAATCTTGATAGAATTTTTTCTACATTCTATACACCTAATAACC
TTCCTACAAAGAGCTGTATGAAAATGAATTCAGGAAGTGATCATCTTAAT
AATATTGAcatattcaaaatattgatcCTCATTTGATCTTAGGGTTGATG
AATATGTGTAATCTAATATTGAACggtaaaagtaatttttatatTATTAT
CAGACATATTGAATTGCttttaaatttgtaaataacATTTTGTTGTAAAC
TCATGTTGAtaatatgtaaatttttgaattatatCACTAAAATTATGACA
AGATTTTAAACCTTTTCCTGattaaaatcttcttaaaaacTCTTATTACT
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021634-exon-sc0000391-1491911889:79916..81767 | TCONS_00021634-exon-sc0000391-1491911889:79916..81767 | Clytia hemisphaerica | exon |
| TCONS_00021634-exon-sc0000391-1510915933:79916..81767 | TCONS_00021634-exon-sc0000391-1510915933:79916..81767 | Clytia hemisphaerica | exon |
| TCONS_00021634-exon-sc0000391-1575043694:79916..81767 | TCONS_00021634-exon-sc0000391-1575043694:79916..81767 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000391 | supercontig | sc0000391:79916..81767 + |
Blast
BLAST of TCONS_00021634 vs. Swiss-Prot (Human)
Match: ATGA1 (Autophagy-related protein 101 OS=Homo sapiens GN=ATG101 PE=1 SV=1) HSP 1 Score: 248.054 bits (632), Expect = 3.157e-77 Identity = 113/217 (52.07%), Postives = 156/217 (71.89%), Query Frame = 3
Query: 237 MNARSQVFEFSAELCQVEEVVCSFLHTLLFHRSTGKFHYQKEGSYTVGTIGYEDVDCHFIDCSYVRCSSEKLNKTVLSYAKQFKDALKNMESHRSGQVSFEFYQKRKNPWPFPTESIPWEMWVLKINIVTVTNDVDRVALREKLTDAVCEKIRVICEIINKPDYIPKMPNEPDLTNIFDNQYTDVQPYLHKFHFQTSEHASDTSVGNTMRRLIKDTF 887
MN RS+V E S E QVEE + + LHT+L HRSTGKFHY+KEG+Y++GT+G +DVDC FID +YVR SSE+L++ + +FKDAL+N GQ+S EFYQK+K+ WPF E IPWE+W +K+++V + + +R REK+ + +CEKI I E++N+ +Y+PKMP + ++ N+FD DVQPYL+K FQ ++ A TSV TMRRLIKDT
Sbjct: 1 MNCRSEVLEVSVEGRQVEEAMLAVLHTVLLHRSTGKFHYKKEGTYSIGTVGTQDVDCDFIDFTYVRVSSEELDRALRKVVGEFKDALRNSGGDGLGQMSLEFYQKKKSRWPFSDECIPWEVWTVKVHVVALATEQERQICREKVGEKLCEKIINIVEVMNRHEYLPKMPTQSEVDNVFDTGLRDVQPYLYKISFQITD-ALGTSVTTTMRRLIKDTL 216
The following BLAST results are available for this feature:
|
