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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021627 ID=TCONS_00021627|Name=TCONS_00021627|organism=Clytia hemisphaerica|type=transcript|length=777bp
GTCGGAAATCTCGTCTTTCGATCTCTTCAAAAAATTGCTGGTGACGATTA
GCGAAGTGAAAGCTTTTCCACCGAACAACATCCAGCCGAGCTTTGTCTTG
ACTGCCGATGGTTGATTTCTTGTACCAGTGACTGATTGTTCTTGCACGAG
AAGATATGATAAGTCAGCGCCAATGAGGATTGTGACGTCTGAATCATGAG
GTGTTGGAAATGTAATGTCTTTCAGGTGTTGAAATTCTGTTTTCACTTTA
TTGATGTCGTACCTATTTACTGGTACGTCAAGGTTCTCAATTACCCAAAC
GTTGTCGAGTTTCTCTTTGGTTTTGTTGTCGTGTGATTCAAGATTGAAGC
AGACTCTCTTTGATTGCAGACTTGTCTCCTTTGATAATACGTTCGACATT
CGAAGAGTTTCTTTCTTACCGGATAGGTGTAGAGCCTCGGCGGTATCAGC
ACGAATCAAGGTACTATCAGATCCAGAGTCGAGGACTGCATTGGTTTTGA
TGCTGTATTTACCATTTGATAATACGACAGGGACAATTTGAAGGAAGGTC
TGGTTGGTAGTAGAACATTGCATACTTTTTGCTGATCCAGGAGTATCAGT
AGTAGTGGCTGTATCTCTGTGAAGCAAAGTGTGATGTTTTTTACCACATC
CGTCCTTCGTACATGTAAATTTGGATGGACACTCTTTAATAATATGATTG
TTAGAGAGACAGTTGAAACAAAGTCCTTTTTCTCTCACGATTTTCTGTCG
ATCGTCTGTAGATGCATTGAGGATCTT Run BLAST on NCBI protein sequence of TCONS_00021627-protein >TCONS_00021627-protein ID=TCONS_00021627-protein|Name=TCONS_00021627-protein|organism=Clytia hemisphaerica|type=polypeptide|length=259bp
KILNASTDDRQKIVREKGLCFNCLSNNHIIKECPSKFTCTKDGCGKKHHT
LLHRDTATTTDTPGSAKSMQCSTTNQTFLQIVPVVLSNGKYSIKTNAVLD
SGSDSTLIRADTAEALHLSGKKETLRMSNVLSKETSLQSKRVCFNLESHD
NKTKEKLDNVWVIENLDVPVNRYDINKVKTEFQHLKDITFPTPHDSDVTI
LIGADLSYLLVQEQSVTGTRNQPSAVKTKLGWMLFGGKAFTSLIVTSNFL
KRSKDEISD Run BLAST on NCBI transcript from alignment at sc0000390:232792..233568 Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021627 ID=TCONS_00021627|Name=TCONS_00021627|organism=Clytia hemisphaerica|type=transcript|length=777bp|location=Sequence derived from alignment at sc0000390:232792..233568 (Clytia hemisphaerica)
AAGATCCTCAATGCATCTACAGACGATCGACAGAAAATCGTGAGAGAAAA
AGGACTTTGTTTCAACTGTCTCTCTAACAATCATATTATTAAAGAGTGTC
CATCCAAATTTACATGTACGAAGGACGGATGTGGTAAAAAACATCACACT
TTGCTTCACAGAGATACAGCCACTACTACTGATACTCCTGGATCAGCAAA
AAGTATGCAATGTTCTACTACCAACCAGACCTTCCTTCAAATTGTCCCTG
TCGTATTATCAAATGGTAAATACAGCATCAAAACCAATGCAGTCCTCGAC
TCTGGATCTGATAGTACCTTGATTCGTGCTGATACCGCCGAGGCTCTACA
CCTATCCGGTAAGAAAGAAACTCTTCGAATGTCGAACGTATTATCAAAGG
AGACAAGTCTGCAATCAAAGAGAGTCTGCTTCAATCTTGAATCACACGAC
AACAAAACCAAAGAGAAACTCGACAACGTTTGGGTAATTGAGAACCTTGA
CGTACCAGTAAATAGGTACGACATCAATAAAGTGAAAACAGAATTTCAAC
ACCTGAAAGACATTACATTTCCAACACCTCATGATTCAGACGTCACAATC
CTCATTGGCGCTGACTTATCATATCTTCTCGTGCAAGAACAATCAGTCAC
TGGTACAAGAAATCAACCATCGGCAGTCAAGACAAAGCTCGGCTGGATGT
TGTTCGGTGGAAAAGCTTTCACTTCGCTAATCGTCACCAGCAATTTTTTG
AAGAGATCGAAAGACGAGATTTCCGAC Coding sequence (CDS) from alignment at sc0000390:232792..233568 >TCONS_00021627 ID=TCONS_00021627|Name=TCONS_00021627|organism=Clytia hemisphaerica|type=CDS|length=777bp|location=Sequence derived from alignment at sc0000390:232792..233568 (Clytia hemisphaerica)
AAGATCCTCAATGCATCTACAGACGATCGACAGAAAATCGTGAGAGAAAA
AGGACTTTGTTTCAACTGTCTCTCTAACAATCATATTATTAAAGAGTGTC
CATCCAAATTTACATGTACGAAGGACGGATGTGGTAAAAAACATCACACT
TTGCTTCACAGAGATACAGCCACTACTACTGATACTCCTGGATCAGCAAA
AAGTATGCAATGTTCTACTACCAACCAGACCTTCCTTCAAATTGTCCCTG
TCGTATTATCAAATGGTAAATACAGCATCAAAACCAATGCAGTCCTCGAC
TCTGGATCTGATAGTACCTTGATTCGTGCTGATACCGCCGAGGCTCTACA
CCTATCCGGTAAGAAAGAAACTCTTCGAATGTCGAACGTATTATCAAAGG
AGACAAGTCTGCAATCAAAGAGAGTCTGCTTCAATCTTGAATCACACGAC
AACAAAACCAAAGAGAAACTCGACAACGTTTGGGTAATTGAGAACCTTGA
CGTACCAGTAAATAGGTACGACATCAATAAAGTGAAAACAGAATTTCAAC
ACCTGAAAGACATTACATTTCCAACACCTCATGATTCAGACGTCACAATC
CTCATTGGCGCTGACTTATCATATCTTCTCGTGCAAGAACAATCAGTCAC
TGGTACAAGAAATCAACCATCGGCAGTCAAGACAAAGCTCGGCTGGATGT
TGTTCGGTGGAAAAGCTTTCACTTCGCTAATCGTCACCAGCAATTTTTTG
AAGAGATCGAAAGACGAGATTTCCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021627-exon-sc0000390-1491911889:232792..233568 | TCONS_00021627-exon-sc0000390-1491911889:232792..233568 | Clytia hemisphaerica | exon |
| TCONS_00021627-exon-sc0000390-1510915933:232792..233568 | TCONS_00021627-exon-sc0000390-1510915933:232792..233568 | Clytia hemisphaerica | exon |
| TCONS_00021627-exon-sc0000390-1575043694:232792..233568 | TCONS_00021627-exon-sc0000390-1575043694:232792..233568 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000390 | supercontig | sc0000390:232792..233568 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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