TCONS_00021608 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021608
Unique NameTCONS_00021608
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2508

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021608 ID=TCONS_00021608|Name=TCONS_00021608|organism=Clytia hemisphaerica|type=transcript|length=2508bp
CAACGTGAGCTTGAAGTGCAACAGAGAAATATgAGAAACAGAATGGACAA
CAATGACATGATGAGAATCCCAGACTCCACTTGTCTTGAGATTGATGAAG
ATAACAATTATGGTGTTTTCATCTCCTTTGTCGAAGTGTACAATAACTCC
ATTTTTGATTTGCTTGATGACAGTTGCATCGATCCAATAAAGAATAGAAC
ACCATCGTCAAAAATTCTACGTGAGGATCAAAGAAGAAATATGTTTGTGT
ATGATTCTACTGAAGTTGAAGTGAAAAGTACTGAAGAAGCTTTTGATTTG
TTCTGGAAAGGCCAAAATAGAAGGAAGACTGCTCTTACTATGCTCAATGC
AGAATCAAGCAGAAGCCATTGTGTTTTCACAATCAGGCTTGTTCAAGCGC
CATTGGGTCCAAATGGAGACTCAATAATGAAGgaTCGTAATTTAATTGGT
ATCAGTCAGTTATCTTTGTGTGATTTGGCTGGATCAGAAAGAACCAGTCG
TACCAAAGCTGATGGTGATAGGATAAGACAAGCAGGGCACATCAACAATT
CTCTCATGACTTTGCGATCTTGCATCGAAACCTTACGAGAAAACCAAAAG
AGCCAAGAAAGTGGTGGCAATTCAAAGATGGTGCCATATCGTGACTCAAA
ACTTACACATCTTTACAAAAATTACTTTGATGGCGACGGGAAGGTTCGAA
TGATAGTTTGCTTGAATCCAAGTGCTGCTGACTTCGACGAAAGTGTGCAC
GTTGTGAAATTTGCTGAAATGACTCAGGAAGTGAAAGTCGCCAGATCAGA
GGGTGTCAAgtTTGATCTTGGACTTACACCTGGTAGAGGAAAAGCCAGCA
AGATGTTTAAGAATGTGGTGGAGGATGTGTCAGATGGATTAAGTAGTGAC
CTTGGAAGTCAAGAAGATTTGATGAGAACAGTTCAACAATTTGCTTCATG
GCCGTTATTAGAGCTCTCCTCATTCAATGACGCGACCACGCTTCCCAATC
TACTGCAATACTTAGAAGAAAGGATAAAACTGCGGCGAACCTTGTTTACC
GACTGGAAACAAAGACAGGACGAAGTCAGACAAATGATACTGCAACTTGA
ACAAGATAATATTGATCTAACGAAAGCACTGGACGATCAAAGATCTGTTC
TTGCTGACAGAGAAAGAGAAACAAAACAGTTCGAGAAGAAGATTCGAATT
TTGAATGAGAAATGCGATACATTACAAAGATCATCACAAACTTACGAAAC
TCAAAAACGACAAGTCGAAGTTGAGcttgaaaaaCAAAGAGAGCTTGTCC
ATAAAGAACGAACTGAGAAAATGAGACTGAAgcagGCATTGAGAGATCTA
ACATCTTCAGAAAGGCTTCGTTACGAAAAAGAAATGGATAAACGTGTAAA
ACAAACACAAATGGAAATGGAAGGACACATCTTTGAAAAATCCGAAAAAC
TCCGTCAACTTCGAAACGTCGTCCAACACTTGGATGTTCCTGCTGAGAAC
CAAGGCAAGGTGAAGAAATCGATAAGAGAAGAGGCACCTCTTCGAGCTTA
CCCACAAACGCCTGCTTCCGCCCCGCACCCAGCAGTTCACAAATCGTCAC
GTCGACCACCCATAGCTAACAAACCTCTGCATACACGTACGAAAACCACC
ACCAATGCAACGCCTCACGGAAAGAAGAAAGTTCGATCTCGATCACCTCC
ACCCTCTGCAGGAAGGAATAAAGATATTGCCCCAGTTCGCGCCAAACATC
GACGATCAAGATCTTCTGATTACTGGCTTGAACATAAACCCACGGAGACA
CTTGCTACTAATACCGTAATGCAGCCAAACTTGAAGAACAAAAAGACGGT
GGATATGCCAAAAGTTAAAGATTTCAAGTCAACACCGAACTACATCCTGA
CGCATCAAGAAGAAGATTCTTCCGGTGAAATCGAAACTAAATTGATTAAG
gGAGAAGTAATGAAAACTCGAGGAGGTGGTACTAGTGTTCAATTCACCGA
CATCGAGACTTTGAAGAAAACATTAGAAGCTAAAGGTGGAATCCCCTCAA
CTCCTAAACCCCCGAAAACTAATACTAAAACtaaaaaacgaaaatcagAA
GGAGAAGACGAAGGAGCGAGTGATGATAGTTGGACCAGCGTCGAAACTCG
CTGTGCGGTTGGTATTGAAGGGCGACCAGGGACGTCACCAGGATTAACGC
ACCATGCCAAaaaatcgaaGCATTGAGTAATCGCAGCATTGAAAATTTCG
TTGGTGTGGATGAATAGGTAAATCAAATCGATTAAAGATGGTAGAAGTAG
AAGAAATAAcgaaagaaaatgattgacgAATTCGTCCTATCTGCTGATAG
CTAATTATTCTAACCAAGACgataaaaatatagaaatattttgaatattg
attTAATTATCCTAATTTGCCCCTTGTATATTTGtaatctatttctattt
ctttatttttaaaatacaatGTATATTTAACCACCTTTAACCTTCAGATC
ATATCGAC
Run BLAST on NCBI

transcript from alignment at sc0000390:243906..254572-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021608 ID=TCONS_00021608|Name=TCONS_00021608|organism=Clytia hemisphaerica|type=transcript|length=10667bp|location=Sequence derived from alignment at sc0000390:243906..254572- (Clytia hemisphaerica)
CAACGTGAGCTTGAAGTGCAACAGAGAAATATGTAAGATATTATGAAAAT
AAACTGGAAGCAATTATTATTATGCAAGTAATTTTGATGATTTTTTTACA
AAAACGGTTTGTTAAAATGTTTCAATTATTGAAATTGTTCTCTCTAATAA
TTCCTGCATGTTCCAATTCACAGAGAATAGTTTGGATTTTAAGTCAACAC
CATTTTGAATTCTATGTAAATTTCCTTTACAGGAAATGTTGACTGACAAT
TTGTTCTTATTTTCTAGGAGAAACAGAATGGACAACAATGACATGATGAG
AATCCCAGACTCCACTTGTCTTGAGATTGATGAAGATAACAATTATGGTG
TTTTCATCTCCTTTGTCGAAGTGTACAATAACTCCATTTTTGATTTGCTT
GATGACAGTTGCATCGATCCAATAAAGAATAGGTATTTATCAAGCACAGG
ATTTTCTTGTTGGATATCAATTAATAACCAGGAGAAACTTAGATATAATC
CTTCAACTTTCGTGAAATTTGTACAGCATTTTCCTTAGGGTCAAAAGAAA
AGCTGGTATTCAAAAAGCACCTTAATCATCAAAACACATTACTTTGGTTT
CTAAGATAAAGTGGACCGAATGGCCTATTGTACAAATTTAATTTTGTACT
TACAAAATAATTTACAATAAATTGCATGTATTTTACTCTCTTTAGAACAC
CATCGTCAAAAATTCTACGTGAGGATCAAAGAAGAAATATGTTTGTGTAT
GATTCTACTGAAGTTGAAGTGAAAAGTACTGAAGAAGCTTTTGATTTGTT
CTGGAAAGGTAATTTCATAGGATGCTTTGAATTTCCTAAGCTTTTCTTCA
GATTACATTTTACAAAATAATAGGGTTGCTAAGGACCTGAAAACCATATA
AACCATAATCTTGAAAATCAAATAAAATTTGGCTAAAAACCTTAAAACTG
TCAGAAATACAATAAACACACACTGTAATAAAACACAATTATATCATAAT
TTGAAATACTTTTTTTTTTGTATTAACTAGGGTTTCTTTTAATAGAAACT
GAAACTCACCCCAACCACACATGTTATCAGTTCCTTCATTGAAAATTTTC
CCAATTGTTAAGTTCTGTTTGGAGTGAATTAGCATGACTGATTTTTAGAA
TGAATCGTGAGCCAATAATCACATTTACTATTCAGGCCAAAATAGAAGGA
AGACTGCTCTTACTATGCTCAATGCAGAATCAAGCAGAAGCCATTGTGTT
TTCACAATCAGGCTTGTTCAAGCGCCATTGGGTCCAAATGGAGACTCAAT
AATGAAGGTAACATATGAAAATCTTTGCAATATGATATATCAAAGCTCCC
TTGGAACTGTGAAACATTTTAATATTCTTTTGTAGTGGACTTTCTTTTGA
ATTTCCTAAGGAAACTTTTCTTGGAGATTCGTCAAATCTTGTAATGGTTC
ATAATAGCATGTTGACATTGAAACAAAAAATTATTTTTAATTTCAGGATC
GTAATTTAATTGGTATCAGTCAGTTATCTTTGTGTGATTTGGCTGGATCA
GAAAGAACCAGTCGTACCAAAGCTGATGGTGATAGGATAAGACAAGCAGG
GCACATCAACAATTCTCTCATGACTTTGCGATCTTGCATCGAAACCTTAC
GAGAAAACCAAAAGAGCCAAGAAAGTGGTGGCAATTCAAAGGTAGCAATG
ATAATCTGTCGATGCCATGAAATAAGTGGAACTTCTCCTATGAGATAAAT
TGTATCTAGTGCAGTAAATAGTTTAGTTTAATTTAACCACCCCCTAACCA
AATAACAAGCGTCTTTGTTCATTCCTTGATCTTATAAGGTTTCAATTCTT
CTTTCAGATGGTGCCATATCGTGACTCAAAACTTACACATCTTTACAAAA
ATTACTTTGATGGCGACGGGAAGGTTTGTATTCACTATTGCTTTTTTTAG
TATTGGTGATTAGTATATCTCTTCATGTCTCTTTTCTCAAACGCCTATAA
TAATTCAACCCTTATTACTATTACTATTTAGGTTCGAATGATAGTTTGCT
TGAATCCAAGTGCTGCTGACTTCGACGAAAGTGTGGTAAGTATTTGCTCA
ATATTATTATCAAAAAAAAGAATACCATCTTCAAATTAATCAAGATTACA
ACTTAATGGTAATGACTTACCTTATTACACTAATATATTACTAGTCATTT
TATTAACACGAACTGAAAAATTTTGTGTTAATAAAAAGACTCTTAATTAA
AACCAGCTGTGGTCTCCTTGAAAAAGCAATAAAATTTGTGTTAATTTTTT
GCGTGTTAATTTCAAGGCCGTGTCTACTTACTTTCGTGTAATAAGGTAGA
TGTAATTTTGTATCTTTGTTTTACAGCACGTTGTGAAATTTGCTGAAATG
ACTCAGGAAGTGAAAGTCGCCAGATCAGAGGGTGTCAAGTAAGTAACTTA
TTACTTTGGTTAACACCCTTTTCTAAATGACTCAAATGAATAGATTTAAT
GGGATCTAGAGGCGATATATCATTTGTTATATAAATAATTTACTTGTTCA
TTTCGATTCATTTCAATATTAAGCTATTGCCCTAATTGATAGCTGTTAAA
TGCTGGGCAAATGTAATTAATTTGTTTTTAAATTTTTTAAGGTTTGATCT
TGGACTTACACCTGGTAGAGGAAAAGGTATGAAAATTTCTGATCGTTGTC
ACCTTCATTTTTATGATATTATGTTTTTAGAAACCTCTCTCCCCTGGACT
ACCACACTTATTTTTTACTTTATTTCCAGCCAGCAAGATGTTTAAGAATG
TGGTGGAGGATGTGTCAGATGGATTAAGTAGTGGTAAGTCAAATCATTTC
GTTTCTTAGAATTATGATAAGTGTATAGGCTTTTATCATGTTTAATTGCT
CGTTCAATATCGATCAGATTTTAGTCAAAAATGACCTGTGGACGCAAAAT
TTGATTTGATTTGAACTTGCCCAATCATCCTGAACCGTCGTGATTATGAC
CACCATATATTTTCCTTTAGACCTTGGAAGTCAAGAAGATTTGATGAGAA
CAGTTCAACAATTTGCTTCATGGCCGTTATTAGAGGTTAGTAGTTCATCT
CCTGTTCCTTCACAACTCTTACAGTCATATTTTGAAAAAGTGGACCACTT
TATAAAAGTTATACCTCAAAATTTAGGTTTGGCTGTGTTCTCTAATAAAA
GTTTTTCTGATCTCTTTTTGTTAGCGTTTTTATTAACTTTAGGATGATTA
GAAAAAGGTGTTTGTTGAACAACGTTTCAATTTTTGATCAAATTATTCTA
TTTCCATAGCTCTCCTCATTCAATGACGCGACCACGCTTCCCAATCTACT
GCAATACTTAGAAGAAAGGATAAAACTGCGGCGAACCTTGTTTACCGACT
GGAAACAAAGACGTATGAAGAATATTTTGATTTGCAACAACATTCGATCA
ACTATAATGAGAAATGTCCCTGCATTTTATATAGAAAGATAGCACAAGGT
TCTTTTTGTGTTATTGCAGTCAACGCGATTCATCTAGTTCCATGGTTTTT
GATTTTATTTCAATGATATATCATTCTTCTTTTACAGAGGACGAAGTCAG
ACAAATGATACTGCAACTTGAACAAGATAATATTGATCTAACGAAAGCAC
TGGACGATCAAAGATCTGTTCTTGCTGACAGAGAAAGAGAAACAAAACAG
TTCGAGAAGAAGATTCGAATTTTGAATGAGAAATGCGATACATTACAAAG
ATCATCACAAACTTACGAAACTCAAAAACGACAAGTCGAAGTTGAGGTAT
GCTCATCAAACTTTCAATTAAAATTGAACTTGTATTGTTTTAGTATAGTT
GACTAATTGATTGAATTTAATAATTTGTTAATTCCATTTTTAGCTTGAAA
AACAAAGAGAGCTTGTCCATAAAGAACGAACTGAGAAAATGAGACTGAAG
CAGGTAAATTTTGTTTTTGATCGTTTGAAAATTTTCCATTTTGTGCAACA
AAGTCATCAAGTTGTAGCCTGGCAAGTGCATTAAAACAAAGTTTTTTTCT
TAAGTTATTGCCAAACAATATAAAAATATTATATGTATTTCATTATAGGC
ATTGAGAGATCTAACATCTTCAGAAAGGCTTCGTTACGAAAAAGAAATGG
TATGTTTTCTTCAGTCTTTTTTATAAACTTTTATATCTATGAAAAGTGAA
ACGAAGATATTATCCTAGCCTGTACCACCCCACCCACAGGCGTTTTTATA
TTTTGAAAAAACATTACCGTGTGTCGGTTGGTTGCGGTTAGCGAGATTCT
ACGTGTCTCAGTTTGTCCCAATTTTCTGGGACAAAATCCTAAAAAATACA
AGCGTAGGAGTGCTCTTTTGAAAATTGAAAGATACCATTGCATTGACGCG
TTAAAAGTAACGTCACTTTAGTTGAGCTACAATCATAGACAAAATATTTG
AGACAAAGGTGATTTCCCGGCGAAATTTTAAATACCACAAATGGTTTTTA
AGCACCTTAAACTACAGTTGGAAAGTAGAGTTTTAACTTTGAGTTTTAAC
ATGAGACTTAAGACTTAGGACCTTTGGATTTCAGGATTTAAAAACTCAAA
TTTGCTCGAATAAGGCTTGGAATATAGCCTAGAAGCCACCGAACCCCTAT
AAAATCGAAATATTCAATGAAAGAAAGTGGAAGTGCTAAAATAGCAATTC
TCGCAGATTCTCGTCCGAACTTTAAATTCTGAAAAACGTTAAAAATCTCA
ATATATTTCGACCATGATTATAGATTGAATGCTAAAAATAGCTACGCTCC
ACCACAGAGACATACAGAGTTTTGTGGAAAAAAGTGCGAGACACGGAATG
TTAACCGAACAAACCGAACTTCGAGTTATCTTTTCAGTCAGCAAAGAAGA
GTTTGGTACAGGCTAATATTATCCATGCAATAGGTTTTCTTCTCAAACAT
GGTTGAAATGGTCATCTTACTGCGAAGTTTCCTGTCGACGTATGAAATTT
TAACGTTTTGGCTTCATTTTTATGAAAACTTTTTTACTTCAGGATAAACG
TGTAAAACAAACACAAATGGAAATGGAAGGACACATCTTTGAAAAATCCG
AAAAACTCCGTCAACTTCGAAACGTCGTCCAAGTAAGTTTAAGCATTCTC
TTATTTAGTTGTGGACAACAATTTAATGTTGACGTTTCATCAGCGTCATA
AAGTATTTTATATTCGGCTGAAAGTGCGTAAAAATCTCTACAAATTTCGA
CTACTTTTGAAACACTTTCAGCACTTGGATGTTCCTGCTGAGAACCAAGG
CAAGGTGAAGAAATCGATAAGAGAAGAGGCACCTCTTCGAGCTTACCCAC
AAACGCCTGCTTCCGCCCCGCACCCAGCAGTTCACAAATCGTCACGTCGA
CCACCCATAGCTAACAAACCTCTGCATACACGTACGAAAACCACCACCAA
TGCAACGCCTCACGGAAAGAAGAAAGTTCGATCTCGATCACCTCCACCCT
CTGCAGGAAGGGTAAGTAAGCTTTTATAAGGGAGAAACTTTCCGCTGAAA
ATTTATTTTTTAGATGTTTTATGGTCAGCTACCTTTGGAAGTTATAAATT
ACTTATTTAAAAGGATATAAGCTTTGGCGAGATAGATTGACAACGATGCT
GGTATTCTTTTGAAGCCAGTTTTAATGCCAATTTGTATTCCCAATCGAGA
CATACATGTCTTTTTTCAAGTCTGTATACACAAACAACTTAGAAGATCCC
AGTAGAATAAATGAGCATAGTGTCAAAAACAAACTTAGTCTTAATCCAAT
TTAAACTTAGTATTGTCATAAAGGAGTGAAACTTTCTTTACAGAATAAAG
ATATTGCCCCAGTTCGCGCCAAACATCGACGATCAAGATCTTCTGATTAC
TGGCTTGAACATAAACCCACGGAGACACTTGCTACTAGTAATAACTTTTT
CTTTTATGTTACATTTCAAAAAGTAATACCTTCCAAAGAAGGACTGAGTG
TCACTTTTTTATGATTAGAATATAATATATTTACTATTGTTGGTTTTCCA
TTCAGATACCGTAATGCAGCCAAACTTGAAGAACAAAAAGACGGTGGATA
TGCCAAAAGTTAAAGATTTCAAGGTATTGTGTAAAATAAATTTTTTTATT
GAATTTCTTTCTCGCGAAACTCGAATATTTTAAAACACCCTTTTCTTCTC
ATCGTTCTATCCCACTACTAATTGATGAGCCTATGGGTGAAAATTATTTC
CATTACATGAACACAATGATTCCTGTACATGAAATTATTTGTTTTTTTTC
AGTAGAAGGCAGGTCCTGATAATATTCACGGTTTATTTCTTTTTTTTTAT
AGCACATTTGGAACATGCCAGTAAGATTGCTTTGTCAGTAGCAAGGAGAC
AAATTTGCAGTTTATTCATTTTTTTTCTATTCCTAGTCATTTTCAAGTTA
TATCAGTTGTTTTGAGAGTCAAATTGTTCTGCCAGAAGTCCCTCGTTGTG
TTGAAAGTCTCTTTATTAGTGTTCATAAGAATTGATTATATTATGTCAGT
TGCTGGGCATTGCTTTATATGTTTTTGTATTCGACTGTTTCCCGTTCTTG
ATTTCAGTCAACACCGAACTACATCCTGACGCATCAAGAAGAAGATTCTT
CCGGTGAAATCGAAACTAAATTGATTAAGGTACTTCTTTATTATAGTAAT
TTTTATCCACATCTGATAATCGTCTTGTGTGTGAAACACTGTAATGGTTG
TTTTTAATTTTTGAAGAAAAATATATTAAATCAAGGTACTTCCTTAATTT
TTTTCTTCATAGATGCATTTGTGCTTCAGTGCCTAAAAAATTTCAACATG
GGGTTATCAGCAGCCACTTTTCATCCGTACTTTAGAGATGACCTACCTCA
CTTCTTTCAATTTTCAGGGAGAAGTAATGAAAACTCGAGGAGGTGGTACT
AGTGTTCAATTCACCGACATCGAGACTTTGAAGAAAACATTAGAAGCTAA
AGGTGGAATCCCCTCAACTCCTAAACCCCCGAAAACTAATACTAAAACGT
GAGTATGCTTTTTCTTGGGTTTTCAAGCAGTGACGGCTGATAAAAAATTT
AATTAGAAATGTTAAGCTGTTGCTATTAGCTATTTATAGATAATTTTTAT
TCCATTTCTATTTTCAGTAAAAAACGAAAATCAGAAGGAGAAGACGAAGG
AGCGAGTGATGATAGTTGGACCAGCGTCGAAACTCGCGTATGTAGTCATT
TCTTGATTCATTGTTGGTAACTCAAAATCACCTGAAGAATTAATTGTCTG
CGTATTATTTAGCTTTCCATTGATATAAAAATCGTTTTCGTAGCAACTCT
CTATCAAAAGTAGCAAAATTTTGTCTTGTTTTCACTTTCTTGCACGAATT
TTAAAAACCAAGTAGTGAAAACTATAAGCACATTTAGATACCTTTCCAAC
GATACCAATGAACATGAACTGGTTGGGAAGTTATGGCCAACAAATAAAAA
CACTGCACACCTTTTTGAAATATACTTTAAAATGTTTTCTCAAGTTTAAT
TCTATATAAACGATCTTTTGAAGATGCTTATCATTTTCTTTTCAGTGTGC
GGTTGGTATTGAAGGGCGACCAGGGACGTCACCAGGATTAACGCACCATG
CCAAGTGAGTTTAAAATTTTGTTCCCAAGTTTGTTCCTTGGGCCTATTCT
TAACTGTCACATTAGTTTTCAGGTTTTCACGCCGTTTTAATAGTAATGTT
TTTTTTGGACCTACCCCTGTGGGCTGTAGGTCCTATAAATTAACCTCTGT
TCGTTCGTTCGTCCGTTCGTCCGTTCGTCCGTTCGTCCGTTCGTTACTAG
CTTTTCTCGGGATTGGCTCATTAGTTTTTCCTAATTTTTGGCACAAAGAT
GCAAAATGGTAATGCCCAAAATGTGACGGAGCCCGATTTTCGAAAAAAAT
TCATTTCCGGCCGAAAATGCCGGAAATATGCCGGAAAAACCGGTTTTTTG
GCATTTTCTCGAGATTTCATCATTAGTTTTTTCTGATTTTTTGCACAAAG
ATGCGTATTAGCAATGCCTAAAACATGGATTAGTCCGATTTTTGAGAAAA
ATTCTATTCCGGCTGAAAATGCCGGAAATATCCCGGAAATCGCCGTTTTT
GCAGATTTTCATCGGACTTTTTCCTTATATTTCGTTGTTTTTTCACACAA
AAACATTATTGATAGCAATGCCCACCATCAAGCATGGATTAATTGTCAAT
AAAAGTGATTTTTGAAGCCGGAACTTTCTAAAAATCGCCGGAACAGCCTA
TTTTCGCCGGAAAAACGGTATTTCTTGAATTTCTCGAGCTGTGCTTTATA
TTTTTTCATGAAATTTTGCAGACTGATGCAAAATGACAATACCTAAAATG
TGACGGAGCCCGATTTTCGAAAAAAATTCATTTCCGGCCGAAAATGCCGG
AAATATGCCGGAAAAACCGGTTTTTTGGCATTTTCTCGAGATTTCATCAT
TAGTTTTTTCTGATTTTTTGCACAAAGATGCGTATTAGCAATGCCTAAAA
CATGGATTAGTCCGATTTTTGAGAAAAATTCTATTCCGGCTGAAAATGCC
GGAAATATCCCGGAAATCGCCGTTTTTGCAGATTTTCATCGGACTTTTTC
CTTATATTTCGTTGTTTTTTCACACAAAAACATTATTGATAGCAATGCCC
ACCATCAAGCATGGATTAATTGTCAATAAAAGTGATTTTTGAAGCCGGAA
CTTTCTAAAAATCGCCGGAACAGCCTATTTTCGCCGGAAAAACGGTATTT
CTTGAATTTCTCGAGCTGTGCTTTATATTTTTTCATGAAATTTTGCAGAC
TGATGCAAAATGACAATACCTAAAATGTGACGGAGCCCGATTTTCGAAAA
AAATTCATTTCCGGCCGAAAATGCCGGAAATATGCCGGAAAAACCGGTTT
TTTGGCATTTTCTCGAGATTTCATCATTAGTTTTTTCTGATTTTTTGCAC
AAAGATGCGTATTAGCAATGCCTAAAACATGGATTAGTCCGATTTTTGAG
AAAAATTCTATTCCGGCTGAAAATGCCGGAAATATCCCGGAAATCGCCGT
TTTTGCAGATTTTCATCGGACTTTTTCCTTATATTTCGTTGTTTTTTCAC
ACAAAAACATTATTGATAGCAATGCCCACCATCAAGCATGGATTAATTGT
CAATAAAAGTGATTTTTGAAGCCGGAACTTTCTAAAAATCGCCGGAACAG
CCTATTTTCGCCGGAAAAACGGTATTTCTTGAATTTCTCGAGCTGTGCTT
TATATTTTTTCATGAAATTTTGCAGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATTTTC
ATCTTTAGCTTTTTCTGATTTTTTGCAGAAAGATGCGTATTTGCAATGCT
CAAAACATGGCCGAGTTCGATTTTTGAGAAAAAGTTTTTTCCGGTTGAAA
ATGCCGGAAATCGCCGTCTTTGCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCATTT
TCGCTAAACGATATATTTTCTGACTGATTTTTTTCTCCTCGCATTGCTAT
CTAACTTTCATCATCAGGTAGGTCCATTCAGCATCTAGCTTGTTTAGTAT
GCGCTAACCCCGGCGCTAACGTCGCTGATAAATGCTCTAAGTTTATTAAA
TTTTTCGAACCTTGGAATTGTTTTTTTTTTTCAAACACATCTTCTCGTCA
TTAGCTCTCTAACGCAGGTGATGATCTGTAGTAATCTGTATCTCTGTGTT
CGGTAGCTGTCTTACGCCATTATTCCCTTTTAAGTAAGTTTACGACGACT
TGTTTTTTTCTTTTTTCAGAAAATCGAAGCATTGAGTAATCGCAGCATTG
AAAATTTCGTTGGTGTGGATGAATAGGTAAATCAAATCGATTAAAGATGG
TAGAAGTAGAAGAAATAACGAAAGAAAATGATTGACGAATTCGTCCTATC
TGCTGATAGCTAATTATTCTAACCAAGACGATAAAAATATAGAAATATTT
TGAATATTGATTTAATTATCCTAATTTGCCCCTTGTATATTTGTAATCTA
TTTCTATTTCTTTATTTTTAAAATACAATGTATATTTAACCACCTTTAAC
CTTCAGATCATATCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012115XLOC_012115Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021608-exon-sc0000390-1575043694:254541..254572TCONS_00021608-exon-sc0000390-1575043694:254541..254572Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1575043694:254141..254305TCONS_00021608-exon-sc0000390-1575043694:254141..254305Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1575043694:253765..253877TCONS_00021608-exon-sc0000390-1575043694:253765..253877Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1575043694:253266..253387TCONS_00021608-exon-sc0000390-1575043694:253266..253387Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1575043694:252882..253076TCONS_00021608-exon-sc0000390-1575043694:252882..253076Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1575043694:252650..252715TCONS_00021608-exon-sc0000390-1575043694:252650..252715Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1575043694:252488..252541TCONS_00021608-exon-sc0000390-1575043694:252488..252541Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1575043694:252135..252196TCONS_00021608-exon-sc0000390-1575043694:252135..252196Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1575043694:251897..251931TCONS_00021608-exon-sc0000390-1575043694:251897..251931Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1575043694:251740..251793TCONS_00021608-exon-sc0000390-1575043694:251740..251793Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1575043694:251488..251552TCONS_00021608-exon-sc0000390-1575043694:251488..251552Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1575043694:251161..251263TCONS_00021608-exon-sc0000390-1575043694:251161..251263Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1575043694:250777..250985TCONS_00021608-exon-sc0000390-1575043694:250777..250985Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1575043694:250620..250679TCONS_00021608-exon-sc0000390-1575043694:250620..250679Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1575043694:250424..250474TCONS_00021608-exon-sc0000390-1575043694:250424..250474Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1575043694:249441..249530TCONS_00021608-exon-sc0000390-1575043694:249441..249530Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1575043694:249062..249301TCONS_00021608-exon-sc0000390-1575043694:249062..249301Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1575043694:248636..248729TCONS_00021608-exon-sc0000390-1575043694:248636..248729Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1575043694:248450..248517TCONS_00021608-exon-sc0000390-1575043694:248450..248517Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1575043694:247894..247965TCONS_00021608-exon-sc0000390-1575043694:247894..247965Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1575043694:247525..247655TCONS_00021608-exon-sc0000390-1575043694:247525..247655Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1575043694:247336..247405TCONS_00021608-exon-sc0000390-1575043694:247336..247405Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1575043694:246919..246977TCONS_00021608-exon-sc0000390-1575043694:246919..246977Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1575043694:243906..244203TCONS_00021608-exon-sc0000390-1575043694:243906..244203Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1510915933:254541..254572TCONS_00021608-exon-sc0000390-1510915933:254541..254572Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1510915933:254141..254305TCONS_00021608-exon-sc0000390-1510915933:254141..254305Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1510915933:253765..253877TCONS_00021608-exon-sc0000390-1510915933:253765..253877Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1510915933:253266..253387TCONS_00021608-exon-sc0000390-1510915933:253266..253387Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1510915933:252882..253076TCONS_00021608-exon-sc0000390-1510915933:252882..253076Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1510915933:252650..252715TCONS_00021608-exon-sc0000390-1510915933:252650..252715Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1510915933:252488..252541TCONS_00021608-exon-sc0000390-1510915933:252488..252541Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1510915933:252135..252196TCONS_00021608-exon-sc0000390-1510915933:252135..252196Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1510915933:251897..251931TCONS_00021608-exon-sc0000390-1510915933:251897..251931Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1510915933:251740..251793TCONS_00021608-exon-sc0000390-1510915933:251740..251793Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1510915933:251488..251552TCONS_00021608-exon-sc0000390-1510915933:251488..251552Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1510915933:251161..251263TCONS_00021608-exon-sc0000390-1510915933:251161..251263Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1510915933:250777..250985TCONS_00021608-exon-sc0000390-1510915933:250777..250985Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1510915933:250620..250679TCONS_00021608-exon-sc0000390-1510915933:250620..250679Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1510915933:250424..250474TCONS_00021608-exon-sc0000390-1510915933:250424..250474Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1510915933:249441..249530TCONS_00021608-exon-sc0000390-1510915933:249441..249530Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1510915933:249062..249301TCONS_00021608-exon-sc0000390-1510915933:249062..249301Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1510915933:248636..248729TCONS_00021608-exon-sc0000390-1510915933:248636..248729Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1510915933:248450..248517TCONS_00021608-exon-sc0000390-1510915933:248450..248517Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1510915933:247894..247965TCONS_00021608-exon-sc0000390-1510915933:247894..247965Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1510915933:247525..247655TCONS_00021608-exon-sc0000390-1510915933:247525..247655Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1510915933:247336..247405TCONS_00021608-exon-sc0000390-1510915933:247336..247405Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1510915933:246919..246977TCONS_00021608-exon-sc0000390-1510915933:246919..246977Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1510915933:243906..244203TCONS_00021608-exon-sc0000390-1510915933:243906..244203Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1491911889:254541..254572TCONS_00021608-exon-sc0000390-1491911889:254541..254572Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1491911889:254141..254305TCONS_00021608-exon-sc0000390-1491911889:254141..254305Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1491911889:253765..253877TCONS_00021608-exon-sc0000390-1491911889:253765..253877Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1491911889:253266..253387TCONS_00021608-exon-sc0000390-1491911889:253266..253387Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1491911889:252882..253076TCONS_00021608-exon-sc0000390-1491911889:252882..253076Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1491911889:252650..252715TCONS_00021608-exon-sc0000390-1491911889:252650..252715Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1491911889:252488..252541TCONS_00021608-exon-sc0000390-1491911889:252488..252541Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1491911889:252135..252196TCONS_00021608-exon-sc0000390-1491911889:252135..252196Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1491911889:251897..251931TCONS_00021608-exon-sc0000390-1491911889:251897..251931Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1491911889:251740..251793TCONS_00021608-exon-sc0000390-1491911889:251740..251793Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1491911889:251488..251552TCONS_00021608-exon-sc0000390-1491911889:251488..251552Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1491911889:251161..251263TCONS_00021608-exon-sc0000390-1491911889:251161..251263Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1491911889:250777..250985TCONS_00021608-exon-sc0000390-1491911889:250777..250985Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1491911889:250620..250679TCONS_00021608-exon-sc0000390-1491911889:250620..250679Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1491911889:250424..250474TCONS_00021608-exon-sc0000390-1491911889:250424..250474Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1491911889:249441..249530TCONS_00021608-exon-sc0000390-1491911889:249441..249530Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1491911889:249062..249301TCONS_00021608-exon-sc0000390-1491911889:249062..249301Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1491911889:248636..248729TCONS_00021608-exon-sc0000390-1491911889:248636..248729Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1491911889:248450..248517TCONS_00021608-exon-sc0000390-1491911889:248450..248517Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1491911889:247894..247965TCONS_00021608-exon-sc0000390-1491911889:247894..247965Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1491911889:247525..247655TCONS_00021608-exon-sc0000390-1491911889:247525..247655Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1491911889:247336..247405TCONS_00021608-exon-sc0000390-1491911889:247336..247405Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1491911889:246919..246977TCONS_00021608-exon-sc0000390-1491911889:246919..246977Clytia hemisphaericaexon
TCONS_00021608-exon-sc0000390-1491911889:243906..244203TCONS_00021608-exon-sc0000390-1491911889:243906..244203Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000390supercontigsc0000390:243906..254572 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.8318	11.3262	7.53771	7.23964	17.1552	15.6203	8.92993	3.45676	6.14434	8.96062	1.88185	1.78494	1.20992	3.85398	3.82358	3.9378	15.7976	7.84749	2.34715	3.69301	3.09954	2.54624	10.2452	8.12251	0	0	1.36786	1.61549	3.5936	7.12803
Blast
[Close]
BLAST of TCONS_00021608 vs. Swiss-Prot (Human)
Match: KIF23 (Kinesin-like protein KIF23 OS=Homo sapiens GN=KIF23 PE=1 SV=3)

HSP 1 Score: 412.92 bits (1060), Expect = 8.794e-129
Identity = 212/468 (45.30%), Postives = 319/468 (68.16%), Query Frame = 1 
Query:   88 EIDEDNNYGVFISFVEVYNNSIFDLLDDSCIDPIKNRTPSSKILREDQRRNMFVYDSTEVEVKSTEEAFDLFWKGQNRRKTALTMLNAESSRSHCVFTIRLVQAPLGPNGDSIMKDRNLIGISQLSLCDLAGSERTSRTKADGDRIRQAGHINNSLMTLRSCIETLRENQKSQESGGNSKMVPYRDSKLTHLYKNYFDGDGKVRMIVCLNPSAADFDESVHVVKFAEMTQEVKVARSEGVKFDLGLTPGRGKASKMFKNXXXXXXXXXXXXXXXXXXXMRTVQQFASWPLLELSSFNDATTLPNLLQYLEERIKLRRTLFTDWKQRQDEVRQMILQLEQDNIDLTK------ALDDQRSVLADRERETKQFEKKIRILNEKCDTLQRSSQTYETQKRQVEVELEKQRELVHKERTEKMRLKQALRDLTSSERLRYEKEMDKRVKQTQMEMEGHIFEKSEKLRQLRNVV 1473
            E+DED+ YGVF+S++E+YNN I+DLL++   DPIK + P SK+LRED+  NM+V   TEVEVKSTEEAF++FW+GQ +R+ A T LN ESSRSH VF I+LVQAPL  +GD++++++  I ISQLSL DLAGSERT+RT+A+G+R+R+AG+IN SLMTLR+C++ LRENQ      G +KMVPYRDSKLTHL+KNYFDG+GKVRMIVC+NP A D++E++ V++FAE+TQEV+VAR    K   GLTPGR      ++N                      +Q F   P  E+   ND  TLP L++ LE+R  LR+ +  ++ ++ +  + ++ +   DN  L+K       L+++  +++ ++ E ++ EKK + L  K + L++++  YE  KR ++ ELE Q + + ++ ++K RL+  L+ + +   +++EKE ++RV   Q+EM+  ++ K EKL+QL+ +V
Sbjct:  209 EVDEDSVYGVFVSYIEIYNNYIYDLLEEVPFDPIKPKPPQSKLLREDKNHNMYVAGCTEVEVKSTEEAFEVFWRGQKKRRIANTHLNRESSRSHSVFNIKLVQAPLDADGDNVLQEKEQITISQLSLVDLAGSERTNRTRAEGNRLREAGNINQSLMTLRTCMDVLRENQMY----GTNKMVPYRDSKLTHLFKNYFDGEGKVRMIVCVNPKAEDYEENLQVMRFAEVTQEVEVARPVD-KAICGLTPGR-----RYRNQPRGPVGNEPLVTDV------VLQSFPPLPSCEILDINDEQTLPRLIEALEKRHNLRQMMIDEFNKQSNAFKALLQEF--DNAVLSKENHMQGKLNEKEKMISGQKLEIERLEKKNKTLEYKIEILEKTTTIYEEDKRNLQQELETQNQKLQRQFSDKRRLEARLQGMVTETTMKWEKECERRVAAKQLEMQNKLWVKDEKLKQLKAIV 658

HSP 2 Score: 140.198 bits (352), Expect = 6.351e-34
Identity = 76/168 (45.24%), Postives = 104/168 (61.90%), Query Frame = 1 
Query: 1717 NKDIAPVRAKHRRSRSS-DYWLEHKPTETLATNTVMQPNLKNKKTVDMPKVKDFKSTPNYILTHQEEDSSGEIETKLIKGEVMKTRGGGTSVQFTDIETLKKTLEAKGGIXXXXXXXXXXXXXXXXXSEGEDEGASDDSWTSVETRCAVGIEGRPGT--SPGLTHHAK 2211
            +++  P+R +HRRSRS+ D W++HKP   + T TVMQP++ +  TV +   K       Y+LTHQE  S GEIETKLIKG++ KTRGGG SVQFTDIETLK+  E+  G         +  +     +  + +GA +  WT VETRC+V +E R G+   PG  HHA+
Sbjct:  799 DQNAPPIRLRHRRSRSAGDRWVDHKPASNMQTETVMQPHVPHAITVSVANEKALAKCEKYMLTHQELASDGEIETKLIKGDIYKTRGGGQSVQFTDIETLKQ--ESPNG---------SRKRRSSTVAPAQPDGA-ESEWTDVETRCSVAVEMRAGSQLGPGYQHHAQ 954
The following BLAST results are available for this feature:
BLAST of TCONS_00021608 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KIF238.794e-12945.30Kinesin-like protein KIF23 OS=Homo sapiens GN=KIF2... [more]
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