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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021607 ID=TCONS_00021607|Name=TCONS_00021607|organism=Clytia hemisphaerica|type=transcript|length=2241bpRun BLAST on NCBI protein sequence of TCONS_00021607-protein >TCONS_00021607-protein ID=TCONS_00021607-protein|Name=TCONS_00021607-protein|organism=Clytia hemisphaerica|type=polypeptide|length=527bp MADSLDTFHCSNIAQFYDGRSIFLTGGTGFIGKVIVEKLLRSCPNINTIYRun BLAST on NCBI transcript from alignment at sc0000390:216406..242901- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021607 ID=TCONS_00021607|Name=TCONS_00021607|organism=Clytia hemisphaerica|type=transcript|length=26496bp|location=Sequence derived from alignment at sc0000390:216406..242901- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000390:216406..242901- >TCONS_00021607 ID=TCONS_00021607|Name=TCONS_00021607|organism=Clytia hemisphaerica|type=CDS|length=20592bp|location=Sequence derived from alignment at sc0000390:216406..242901- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00021607 vs. Swiss-Prot (Human)
Match: FACR1 (Fatty acyl-CoA reductase 1 OS=Homo sapiens GN=FAR1 PE=1 SV=1) HSP 1 Score: 432.565 bits (1111), Expect = 1.195e-142 Identity = 204/513 (39.77%), Postives = 332/513 (64.72%), Query Frame = 3
Query: 159 NIAQFYDGRSIFLTGGTGFIGKVIVEKLLRSCPNINTIYFLVRPKKGKTCEERMDSIFSLPLFKKLNEKDPEARNKVVPIQGDITHKSLGISDEDRQTLVDNVDIIMHSAATVKFNEHIRIAMEMNVIAVIEMIKLAKAMKKLEIFCHVSTAYSQCNQPKSLDILEKFYPVSVEPENIIEAMGWMNDKMLTGFTEPLIDKYPNTYTFTKALAEHLIKKESENIPFMIVRPXXXXXXXXDPFPGWVDNYNGVSGMMVAVGRGIVRSLYAP-EIKHDIVPVDFVSNCIIVSTWYYGVSRLKTPMICNCTSGNVNPTSFVDMQKVVLPVFSHHYPLTSIFRRPNFAFAPNRFLNQYWQMVSHYIPAIILDGLTVLVGMKPRFMNIYRTIDSSISTLDFFIQNEWKWGHTEFSKILKAVPEDDKEAFDFDMRKIDWSNYYADMTIGVKKFLVKDDMAELPKARNIHRRYKMVRWLSSTIFILLAGRFFFLKSERFRKLWFEALFSIYKFLQFFRITS 1694
+I ++Y+G+++ LTG TGF+GKV++EKLLRSCP +N++Y LVR K G+T +ER++ + S LF +L +++P+ R K++ I ++T L +S+ED++ ++D+ +II H AATV+FNE++R A+++NVIA ++I LA+ MK LE+F HVSTAY+ CN+ K +D E YP V+P+ +I+++ WM+D ++ T LI PNTY +TKALAE+++++E + IVRPSIV +S +PFPGW+DN+NG SG+ +A G+GI+R++ A D+VPVD V N + + WY GV+R + M+ NCT+G+ NP + +++ V+ F + PL FRRPN N L YW VSH PA + D + G PR M + ++ L++F N W W + ++ + +DK+ F+ D+R++ W+ Y + +G KK+++ ++M+ LP AR + + +R+ +TI ++L R F +S+ R +W+ + YKFL +FR +S
Sbjct: 3 SIPEYYEGKNVLLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEVLSGKLFDRLRDENPDFREKIIAINSELTQPKLALSEEDKEVIIDSTNIIFHCAATVRFNENLRDAVQLNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNR-KHID--EVVYPPPVDPKKLIDSLEWMDDGLVNDITPKLIGDRPNTYIYTKALAEYVVQQEGAKLNVAIVRPSIVGASWKEPFPGWIDNFNGPSGLFIAAGKGILRTIRASNNALADLVPVDVVVNMSLAAAWYSGVNRPRNIMVYNCTTGSTNPFHWGEVEYHVISTFKRN-PLEQAFRRPNVNLTSNHLLYHYWIAVSHKAPAFLYDIYLRMTGRSPRMMKTITRLHKAMVFLEYFTSNSWVWNTENVNMLMNQLNPEDKKTFNIDVRQLHWAEYIENYCLGTKKYVLNEEMSGLPAARKHLNKLRNIRYGFNTILVILIWRIFIARSQMARNIWYFVVSLCYKFLSYFRASS 511 The following BLAST results are available for this feature:
BLAST of TCONS_00021607 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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