TCONS_00021607-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00021607-protein
Unique Name	TCONS_00021607-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	527

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00021607-protein ID=TCONS_00021607-protein|Name=TCONS_00021607-protein|organism=Clytia hemisphaerica|type=polypeptide|length=527bp
MADSLDTFHCSNIAQFYDGRSIFLTGGTGFIGKVIVEKLLRSCPNINTIY
FLVRPKKGKTCEERMDSIFSLPLFKKLNEKDPEARNKVVPIQGDITHKSL
GISDEDRQTLVDNVDIIMHSAATVKFNEHIRIAMEMNVIAVIEMIKLAKA
MKKLEIFCHVSTAYSQCNQPKSLDILEKFYPVSVEPENIIEAMGWMNDKM
LTGFTEPLIDKYPNTYTFTKALAEHLIKKESENIPFMIVRPSIVSSSISD
PFPGWVDNYNGVSGMMVAVGRGIVRSLYAPEIKHDIVPVDFVSNCIIVST
WYYGVSRLKTPMICNCTSGNVNPTSFVDMQKVVLPVFSHHYPLTSIFRRP
NFAFAPNRFLNQYWQMVSHYIPAIILDGLTVLVGMKPRFMNIYRTIDSSI
STLDFFIQNEWKWGHTEFSKILKAVPEDDKEAFDFDMRKIDWSNYYADMT
IGVKKFLVKDDMAELPKARNIHRRYKMVRWLSSTIFILLAGRFFFLKSER
FRKLWFEALFSIYKFLQFFRITSISSV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_012113	XLOC_012113	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00021607	TCONS_00021607	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013120	Male_sterile_NAD-bd
IPR033640	FAR_C
IPR016040	NAD(P)-bd_dom

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013120	Male sterility, NAD-binding	PFAM	PF07993	NAD_binding_4	coord: 24..296 e-value: 1.5E-77 score: 260.2
IPR033640	Fatty acyl-CoA reductase, C-terminal	PFAM	PF03015	Sterile	coord: 369..460 e-value: 4.4E-26 score: 90.8
IPR033640	Fatty acyl-CoA reductase, C-terminal	CDD	cd09071	FAR_C	coord: 367..457 e-value: 6.25484E-25 score: 98.0115
None	No IPR available	GENE3D	3.40.50.720		coord: 16..441 e-value: 1.1E-40 score: 139.3
None	No IPR available	CDD	cd05236	FAR-N_SDR_e	coord: 20..341 e-value: 7.41291E-134 score: 393.202
IPR016040	NAD(P)-binding domain	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 11..56 coord: 212..299 coord: 87..168

Blast

[Close]

BLAST of TCONS_00021607-protein vs. Swiss-Prot (Human)
Match: FACR1 (Fatty acyl-CoA reductase 1 OS=Homo sapiens GN=FAR1 PE=1 SV=1)

HSP 1 Score: 442.58 bits (1137), Expect = 3.634e-151
Identity = 204/513 (39.77%), Postives = 332/513 (64.72%), Query Frame = 0

Query:   12 NIAQFYDGRSIFLTGGTGFIGKVIVEKLLRSCPNINTIYFLVRPKKGKTCEERMDSIFSLPLFKKLNEKDPEARNKVVPIQGDITHKSLGISDEDRQTLVDNVDIIMHSAATVKFNEHIRIAMEMNVIAVIEMIKLAKAMKKLEIFCHVSTAYSQCNQPKSLDILEKFYPVSVEPENIIEAMGWMNDKMLTGFTEPLIDKYPNTYTFTKALAEHLIKKESENIPFMIVRPSIVSSSISDPFPGWVDNYNGVSGMMVAVGRGIVRSLYAP-EIKHDIVPVDFVSNCIIVSTWYYGVSRLKTPMICNCTSGNVNPTSFVDMQKVVLPVFSHHYPLTSIFRRPNFAFAPNRFLNQYWQMVSHYIPAIILDGLTVLVGMKPRFMNIYRTIDSSISTLDFFIQNEWKWGHTEFSKILKAVPEDDKEAFDFDMRKIDWSNYYADMTIGVKKFLVKDDMAELPKARNIHRRYKMVRWLSSTIFILLAGRFFFLKSERFRKLWFEALFSIYKFLQFFRITS 523
            +I ++Y+G+++ LTG TGF+GKV++EKLLRSCP +N++Y LVR K G+T +ER++ + S  LF +L +++P+ R K++ I  ++T   L +S+ED++ ++D+ +II H AATV+FNE++R A+++NVIA  ++I LA+ MK LE+F HVSTAY+ CN+ K +D  E  YP  V+P+ +I+++ WM+D ++   T  LI   PNTY +TKALAE+++++E   +   IVRPSIV +S  +PFPGW+DN+NG SG+ +A G+GI+R++ A      D+VPVD V N  + + WY GV+R +  M+ NCT+G+ NP  + +++  V+  F  + PL   FRRPN     N  L  YW  VSH  PA + D    + G  PR M     +  ++  L++F  N W W     + ++  +  +DK+ F+ D+R++ W+ Y  +  +G KK+++ ++M+ LP AR    + + +R+  +TI ++L  R F  +S+  R +W+  +   YKFL +FR +S
Sbjct:    3 SIPEYYEGKNVLLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEVLSGKLFDRLRDENPDFREKIIAINSELTQPKLALSEEDKEVIIDSTNIIFHCAATVRFNENLRDAVQLNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNR-KHID--EVVYPPPVDPKKLIDSLEWMDDGLVNDITPKLIGDRPNTYIYTKALAEYVVQQEGAKLNVAIVRPSIVGASWKEPFPGWIDNFNGPSGLFIAAGKGILRTIRASNNALADLVPVDVVVNMSLAAAWYSGVNRPRNIMVYNCTTGSTNPFHWGEVEYHVISTFKRN-PLEQAFRRPNVNLTSNHLLYHYWIAVSHKAPAFLYDIYLRMTGRSPRMMKTITRLHKAMVFLEYFTSNSWVWNTENVNMLMNQLNPEDKKTFNIDVRQLHWAEYIENYCLGTKKYVLNEEMSGLPAARKHLNKLRNIRYGFNTILVILIWRIFIARSQMARNIWYFVVSLCYKFLSYFRASS 511

The following BLAST results are available for this feature:

BLAST of TCONS_00021607-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00021607-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FACR1	3.634e-151	39.77	Fatty acyl-CoA reductase 1 OS=Homo sapiens GN=FAR1...	[more]

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TCONS_00021607-protein (polypeptide) - C. hemisphaerica