TCONS_00021606 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021606
Unique NameTCONS_00021606
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length338

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021606 ID=TCONS_00021606|Name=TCONS_00021606|organism=Clytia hemisphaerica|type=transcript|length=338bp
GCAATGTATATATATGGTTGGTGGGACAGTATACCACCCTGGCTGATTAG
AAAAATTGTATGAGCTTTATCGTTGATGTGCTCTACTGTATCACAGTACT
AAGACATTGAACAATTAGAAATGTCAGCCTGTGTTTCACAAGAAGAATCT
CCTTCGGGAATTCGACAATATTATGCTGGCAAATCGGTTTTCATAACTGG
TGCTACTGGATTTATCGGGAAAGTCATCGTTGAAAAGCTTCTACGTACAT
GTCCGGATATCAGAGCAATTTATATCCTGATTCGTCCGAAGAAGGGCATG
GATTGtcataaaagaattgaaaagatatttttgcTTCC
Run BLAST on NCBI

transcript from alignment at sc0000390:212931..214499-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021606 ID=TCONS_00021606|Name=TCONS_00021606|organism=Clytia hemisphaerica|type=transcript|length=1569bp|location=Sequence derived from alignment at sc0000390:212931..214499- (Clytia hemisphaerica)
GCAATGTATATATATGGTTGGTGGGACAGTATACCACCCTGGCTGATTAG
AAAAATTGTATGAGCTTTATCGTTGATGTGCTCTACTGTATCACAGTACT
AAGGTTAGTATGTCCACTACCCATTTCCCGCCTCACTAATGTTTCTCGCT
TACCAGGATCACGTTATATTCTTTGGATAAAACTTTGAATTGCCACTTAT
TATCGCTAGTTATAATTATCAATCGAATAGTTTCTCGGGATAAGATCTTC
TAAATAGCTTTAGCAAAATTTTGTTGATTTTTTTTCTATTTTTTTCATAA
CCTATTCTCCGTCGAAAAATAACGTAAGAATTTTCCAATTACTTTAATTA
AAACATACGATTCGAGTACATTGAACTAAAACTTTTCGCGTCAGTGACTG
TAATTAGAAAGTCATTTACACCAATTATATTCCTCCTTGTAATTAATGTT
TTGTTTTCATGAAATGAGTGTTATACTAAAACACCTTCAATTAAAATTAG
TCTCAAGTTCAATTGCCTTCAAAAAAGTCTTTTGTTTTGGACGAGTTGTC
ATCGTATATTTTTTGTTGGCTCGCTTTCAAATTGGATTACTGTAAAAGAG
AAAAATATTTTCATTGCAAGAAAACCAAAATATTTTGAAAATAATTTAGG
AACCGCAAACATTTGATTACTCCTAAGCAACAATAAATCTTCTCATTTTG
TCTTGTATAGTAAATCTAAGATAGCTAGCGAAAGGACCCTGTATCTTCTT
TGAAGAAAGGTTGAAAGGTTCCTTCTCATGCATATGGCTCTTACGCTACC
ATTTTCGTTAGCATTTCTCTATCTTTTTATGTCTTTCTCTAGTATTTTAC
TTCCACAGTTAGAAAAAGTATATTTCGTTGAAATGCGATAGCGCATGGTA
TTACTTTCGATTTCTGTTTGTTCTCTTACCGAGTGATTTCATCATGGAGA
GGCTTTGTGTTGCAACAACAACAAATTGACGTGTGTAGGTGGTTGCAACA
AACAATCTTATAAAGGCATTTCTTATGGATTGAATAACTTTATAGATGGA
GTTTGGTTGTGAATTTATGAAATGGCTATGAATGGCTGAGGCCGTGCATT
CAGGGTTTTATCAGGAAAAAGTCTCAATACATAATAAATGCAAGGAGTTT
CCTCCAAACCACCATATGGTCGACCTGTGAAAGAAACATCTCATCAATTT
TGCTGTAAAAAAAAGAGAAAAGTGGTGAAGATGAAATATCTATAAATTGG
AAAGAAGCTTCTTTAAATTTTCCAGTTTTTATTGATTGGTAAAATGGTTA
TTATAATCATGGTTATTTTTTCTTCTCTTTATAGACATTGAACAATTAGA
AATGTCAGCCTGTGTTTCACAAGAAGAATCTCCTTCGGGAATTCGACAAT
ATTATGCTGGCAAATCGGTTTTCATAACTGGTGCTACTGGATTTATCGGG
AAAGTCATCGTTGAAAAGCTTCTACGTACATGTCCGGATATCAGAGCAAT
TTATATCCTGATTCGTCCGAAGAAGGGCATGGATTGTCATAAAAGAATTG
AAAAGATATTTTTGCTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012114XLOC_012114Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021606-exon-sc0000390-1575043694:214397..214499TCONS_00021606-exon-sc0000390-1575043694:214397..214499Clytia hemisphaericaexon
TCONS_00021606-exon-sc0000390-1575043694:212931..213165TCONS_00021606-exon-sc0000390-1575043694:212931..213165Clytia hemisphaericaexon
TCONS_00021606-exon-sc0000390-1510915933:214397..214499TCONS_00021606-exon-sc0000390-1510915933:214397..214499Clytia hemisphaericaexon
TCONS_00021606-exon-sc0000390-1510915933:212931..213165TCONS_00021606-exon-sc0000390-1510915933:212931..213165Clytia hemisphaericaexon
TCONS_00021606-exon-sc0000390-1491911889:214397..214499TCONS_00021606-exon-sc0000390-1491911889:214397..214499Clytia hemisphaericaexon
TCONS_00021606-exon-sc0000390-1491911889:212931..213165TCONS_00021606-exon-sc0000390-1491911889:212931..213165Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000390supercontigsc0000390:212931..214499 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.275019	0.268186	0.31139	0.304647	10.0137	6.4476	54.8049	50.3146	27.5786	19.5203	13.3743	20.1477	5.48719	7.78795	10.6192	12.0664	3.09683	4.02059	4.38526	6.73033	6.64759	5.05824	25.8571	22.3612	16.8307	12.9128	9.42763	21.7327	92.7958	71.5302
Blast
[Close]
BLAST of TCONS_00021606 vs. Swiss-Prot (Human)
Match: FACR2 (Fatty acyl-CoA reductase 2 OS=Homo sapiens GN=FAR2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.659e-17
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:  154 SGIRQYYAGKSVFITGATGFIGKVIVEKLLRTCPDIRAIYILIRPKKGMDCHKRIEKIF 330
            S I  +Y GKS+ ITGATGF+GKV++EKL RT PD++ IYIL+RPK G    +R+ +I 
Sbjct:    2 STIAAFYGGKSILITGATGFLGKVLMEKLFRTSPDLKVIYILVRPKAGQTLQQRVFQIL 60
The following BLAST results are available for this feature:
BLAST of TCONS_00021606 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FACR21.659e-1755.93Fatty acyl-CoA reductase 2 OS=Homo sapiens GN=FAR2... [more]
back to top