TCONS_00021601 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021601
Unique NameTCONS_00021601
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1383

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021601 ID=TCONS_00021601|Name=TCONS_00021601|organism=Clytia hemisphaerica|type=transcript|length=1383bp
CAGTATCTCTGATCCGTTTCCTGGATGGGTAGATAATTACAATGGAGTTA
GTGGCATGATGGTTGCTGTTGGACGAGGAATTGTTCGATCTCTGTATGCT
CCAGAAATCAAGCATGATATTGTGCCAGTAGACTTTGTCTCCAATTGTAT
CATTGTTTCAACTTGGTATTATGGTGTGTCCAGACTAAAGACACCCATGA
TATGTAACTGCACTTCAGGCAACGTGAACCCAACAAGTTTTGTTGACATG
CAGAAAGTTGTCTTACCAGTGTTCTCCCATCATTATCCTTTGACCAGCAT
CTTCAGAAGACCAAATTTTGCTTTTGCTCCCAACAGGTTTTTGAATCAGT
ATTGGCAGATGGTTAGTCACTACATTCCAGCTATCATTCTCGATGGATTG
ACTGTTCTTGTCGGTATGAAACCGAGGTTCATGAATATCTACCGCACCAT
TGACTCCAGTATCAGCACACTCGATTTCTTCATACAAAATGAATGGAAAt
gGGGACATacagaattttcaaagattttgaaagcTGTACCAGAAGATGAT
AAAGAGGcgtttgattttgatatgaGGAAGATTGACTGGAGTAATTATTA
TGCTGACATGACGATTGGTGTCAAGAAATTCCTTGTCAAGGATGATATGG
CTGAGTTACCTAAAGCACGCAATATTCATAGGAGATACAAAATGGTGCGA
TGGTTGTCTTCtacgattttcattttattggcTGGTCGATTCTTCTTCTT
GAAATCTGAAAGATTCCGTAAATTATGGTTCGAAGCTTTGTTCTCCATCT
ACAAATTTTTGCACCTTCTACGAATTCCAACTTTTCGAATTGTATGATAT
GTGAAATGAAGAAAGGGCATTTTCATTGGTCGTTCATTTTTCTTGGTCGT
TCATTGGTCATTCTGTgaatctattttattgaaatttgtttcaatttgGT
TTTTCAATCAGATCAACGCGGCTGTACTGAAATATGAGGAGTACATAATT
TACTCCTTCTTACCggtgttttgatagatttaaaaaaaactctCTTAGGT
GAATTTATTATAGTTGtaatttgttaaatttttcttcttaaCCCTTAATT
ATATACCTGGAAGTTTTAATAACTAAATTTTATGTGCTAAGCCACCTTTt
atgttgaaaattgaaaaatgtatatctatctatctatctacttttaaaaa
tttgatttatttttaattcgGTACGCACCAAAGTTAGTCCAATCAATATA
TTTATTTGTGCTTAATTGCCTTACGGGTTCTTTATTGAATATTAAGATGC
ATATAAGCAGAATGTCGTATTCTTGATTATGATTTTGCGGAAATTTTTGT
ATTCGTTATCATTTTTAggtatttattgaaaat
Run BLAST on NCBI

transcript from alignment at sc0000390:204679..220080-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021601 ID=TCONS_00021601|Name=TCONS_00021601|organism=Clytia hemisphaerica|type=transcript|length=15402bp|location=Sequence derived from alignment at sc0000390:204679..220080- (Clytia hemisphaerica)
CAGTATCTCTGATCCGTTTCCTGTAAGTTTTTTTTGCTAGTAAGAAAGAA
AATCTTTTCTGAACAATCTTCTGGTTTAATTAACAAGATACACATTTTTT
GCACATTGTATATGGCAAGACTTTGAATTGGATATTCATTATTTAATTTG
TCAAATGGATTTATTATGTTCTTTTACTTATATTTTCAGGGATGGGTAGA
TAATTACAATGGAGTTAGTGGCATGATGGTTGCTGTAAGTTGAATGCTTT
GTCTCGCTATGGTAGAAGTCCATGACAGATTAGCTAGTATCTGATTGTCA
CTTCTTTTCTATTAATTATACATGAGACTACTAGACTAACTCACTGAGCT
TTATATATATGAACCCTGTTTTTGACTGTTTCTAAATCCTGGCCAATCAA
AATCTGTGATTAAAGTTTTTTTTAGTGGTACTTGTTAAGTCCGAAGTTTT
TAATTTCATTAACTTTTACATAAAGTGTCTTCTTTCATCTGATTAAAATT
GAAAAATGTCACTGTGGTCAATTTCCTTTAAAATCTTTTAGTATCAAAAT
AGCAAACAGCAACAAAATATCATTACTGACAACTATTACCAAATTATTTT
TCAATTTGGGGTTTTGTTTATTGTTACTTGAAGGTTGGACGAGGAATTGT
TCGATCTCTGTATGCTCCAGAAATCAAGCATGATATTGTGCCAGTAGACT
TTGTCTCCAATTGTATCATTGTTTCAACTTGGTATTATGGTGTGTCCAGG
TATTGATTATATCAACTTATTTTGCCGAGCAAATGTTCAAAGTTATCAAA
TTAAAAATACTGAAAGATTGTGCTAGCAGATTAACCTATTTGCACCTAAC
TATGAAAAAATCTATCTTTAAGCAAGAAGGTAATCGAATTCGGGTAACTT
TGATACAAGTGTTTTCTGCTGTAATTTTATTATTTTAAAGGGGTAAGTGT
AAAATTGCTCATTTATTGGTTTATTATTTGGAACAAGATTCATTCTTTAT
CAAATCCTAAGAAAATGTTGACAGTGTTAACAAAGTGAGTATATATTCAT
TACAGACTAAAGACACCCATGATATGTAACTGCACTTCAGGCAACGTGAA
CCCAACAAGTTTTGTTGACATGCAGAAAGTTGTCTTACCAGTGTTCTCCC
ATCATTATCCTTTGACCAGCATCTTCAGAAGACCAAATTTTGCTTTTGCT
CCCAACAGGTAAGCATGTATTTCCAATTTCGATAAGATGGTTTTCAAACT
TCCAAATCTTATCGCCAAAAATCTAACTTCAATTAGTAGTTCAAGTCCAG
GACAAAGCCAGCAATACGAAATACCAACATCACGCATTTGCAGATTTGAA
TTCCCAGTTATCGCTTTAAAGGGACATAACAGTACTTGCGAAATTTGTAA
TCAAACTGTATGCAGCGGATACAAAATCAAAACAAATGTCACATGTCAAA
ATAAAAATAAAACCAAATATGGCTAATTTTGATTGTTCAATTGTTTTACA
AGTTTTTTTTGGACACGTGATTTTAATTGTTCTCTTTAATGACACGTGGT
TCGCGCAATGTTTACATTTTACTACTATTATGTCCCTTTAAATGTTCATT
AGCCTTTGATAGCGTTCTGAAAATCTGTTCAAATTATCTTTAGGTTTTTG
AATCAGTATTGGCAGATGGTTAGTCACTACATTCCAGCTATCATTCTCGA
TGGATTGACTGTTCTTGTCGGTATGAAACCGAGGTTTGTTGTTCTTTATC
TTCTGCATCGTCAAAATTAGTTGCCCAACTTTAGTCGAGCTACAATGTGA
GAATATGTCCCGTATACTTTGGGGAGCCTGGAGCCGTTATAAATGGCCAA
GGGTGTTCTCTTTTGTCAAAAATAGTTTTTGGAACCTTGGAACACTTTCT
TCACTTTTTCTACACAAGGCTCCGATTATATTTGGAAAAAAGTTTGTCTC
TGCATTGTTTTACTCAAAATTAAAATTTTATTTTGTAAATCATTTCAAAG
TAAATGTTTTTTCTGTAGGTTCATGAATATCTACCGCACCATTGACTCCA
GTATCAGCACACTCGATTTCTTCATACAAAATGAATGGAAAGTAAGGATT
TCTTAATTATTATTGTGCTTATAAATGCCTTCAATCTTACAAATACCAAT
AGGTCTTCTTCTTACCCTAAATATTTGAACAAATTTTTGACAGCCCCTGC
CACAGCTGACCTTTTCAGTTTAAGCCCCATGGATTTTATATGTACGACGA
CCACTAAAATGTATGCTTTACCGAGAGCGTTCAAGAAAGGATTGATTTAC
GTTTTTGTTTTCATTTATGACGAATAGTTCAACCTCTTTATTTTTTATGT
TTCAGTGGGGACATACAGAATTTTCAAAGATTTTGAAAGCTGTACCAGAA
GATGATAAAGAGGTAACACTGTTCTTTGTTCATCTCTTTATATGAGAAAT
GTGTCTACTTAGTGCCTTGAAAAACATTCAAGAATCTTCTTCGTTAACAG
CATAGAGATCACTACTTTTCAAGAAGGGTGGAAACTCAAATGAGATCTTT
TCGATTGTCTAATTCTTCACTTTATCGTTCGTTTTCTTTCAGGCGTTTGA
TTTTGATATGAGGAAGATTGACTGGAGTAATTATTATGCTGACATGACGA
TTGGTGTCAAGAAATTCCTTGTCAAGGATGATATGGCTGAGTTACCTAAA
GCACGCAATATTCATAGGAGGTATCTTCTTTCTTTTCTCTTGAACCATTT
TTTATGAAAATTCAAGTTCCATTCATTTTTCTCATGGCGTGATGACGCCA
TTTCGGCCATGTTGAAACTTCAAGTAAAGGTTGTATCATGTTTTTAGGAT
TCTTTAATGATAAGCTTTATTTAGCTTTACGGGGTGGTATATACCAGAAT
CTAACATTTCGTTAATTCTTTTAAAATTTTGCACGGCTCATCAAATTTCT
TTTGTAAATCATACATTTTCTTGCTTTTAGATACAAAATGGTGCGATGGT
TGTCTTCTACGATTTTCATTTTATTGGCTGGTCGTTTCTTCTTCTTGAAA
TCTGAAAGATTCCGTAAATTATGGTTCGAAGCTTTGTTCTCCATCTACAA
ATTCTTACAATTTTTCCGTATAACCAGTATATCTTCTGTGTAACGTGTCT
AAACAGAAACTAAGTATTTAGCACTTCTAAAGATTGGTATATACAGTGTT
GATGGAGTACAGACGATTGCATCAGATCTCGGTTGCTGTGTATGGTTCTT
TTGGCTTCCCATGATATGGATGGAGTGTATCATCGAACCCTTGATAGCTC
TATTCAATTCAAACACTATGACAAGTTCTTCTTGTCAAAAGGAGCAATAG
TAACAATCGATTTGTTGTTGTTGTTGTTGTTTATACTTTTCTTTGTTTTA
TGATATTCATTATTTTGTTATCAGTTCAGTTTATAGTTTATTTAATTTGA
TGAATTTTTACTATTTTTTATTTTTTTTTGTCAAATAATTTTCTAATGCA
CAAAAATCATTAGGTCACTTAAACAAGTGTGTACTCTCTCATAGTTTTAA
ATTACAACTTGGGAGATATTATCGTTGTGATAAAAAATTATTGAGATCCA
AAAAGTTTTTTTACAACTATTTATTTGATAAAAATTATTCTTTTTTCGGT
CAGTATCTATTCTAGACCATTTAGGGTTACTTTTAAGTTTATTATGTTTG
AATTTTTAATTTAATTTTTCATATTCTGTCATACATGAATGCTTACCTAA
GTGAAAATATTCTCTGAGCGAAAAGGGGTCATTCTTCTCGAATTTTAAAT
CTGTAGTGAAATTGTCTGGTTTAGTTATGACTTAAAGAGGCGCCTCAAGC
GTTTACTTGAATTTTGTTTATGTCGAATCAAATTTATCAAATTTATCAAA
TCAGTCTTGATGTATCTTTCACTAAATCATTGAAAGTGTAGTTTAAAATT
GCGACGAAATTTACGTTGCTTTTTGAACCATTTAATTTATCTAGGATTTC
TTATTTTGAAGCATTTTATCAATATCGATATAATTAAGAGAATTATATGT
GAAAAAACTGCCTTCGAAACTTCTACAGACTTAACTAAGTGTCAAAACTG
GCACGTGACATTTTATTCCTGTTAATTCTTTCTCAAGTATTAAAACACAA
GATATTCACAGATAGTCTCAGAAGAAAAATGTCCATCTGACATAAATCCA
ATGTTATACTTTGTAAGTTATGATAATACATACTTTCTTTTATAATTTCT
AATCAAACTTACTATAAGTGTCAAGAGAAGTTACAAATTACTAAGTGCAA
TGCATAGTACAGAATTATTGATATAGTGTAGATGTTATCTGTTGATCGCC
AGATAAGAAGTTAGTATGGGAAACCAGACGNTTTGTTTTATGATTGTCAT
TATTTTGTTATCAGTTCAGTTTATAGTTTATTTAATTTGATGAATTTTTA
CTATTTTTAATTTTTTTTGTCTTATAATTTTCTAATGCACAAAAATCATT
AGGTCACTTAAACAAGAGTGTACTCTCTTAGTTTTAAATTACAGCTTGGT
ATCGTTGTGATGAAAACTTACTCGAGATTCAAAATTTTTTTACAACTATT
TATTTGATTAAAAACTATTCTTTTTTCGGTCAATATCTATTTTAGACCAT
TTAGGGTTACTTTTAAGTTTATTATGTTTAAATTTTTATTTCATTTTTCT
TATTCTGTCATACCTGAATGCTTACCTGAGTGAAAATATTCTCTGAGCGA
AAAGGGGTCATTCTTTTTGAATTTTGAATCTGTAGTGAAATTGTCTGGAT
TAGACTTGTAGAGGCGCCTCAAGCGTTGACTTGAATTTTGTTTATATGTC
GAATCAAATTTGTCAAATTTATCAAATCAGTCTTGAAGTATCTTTCACTA
AATCATTAAAAGTGTAGTTTGAAATTACGATGAAATTTACGTTGCTTTTT
GAACCATTTAATTTATCTAGGATTTCTTATTTTGAAGAATTTTATCAATA
TCGATATAATTAAGAGAATTATATGCGAAAAAACTGCCTCCAAAACTTCT
ACAGACTTAATTAAGTGTCAAAACTGGCACGTGACATTTTATTCCTGTCA
ATTCTTTCCCAAGTATTAAAACACAAGATATTCACAGATAGTCTCAGAAG
AAAAATGTCCATCTGACATAAATCCCATGTTATACTTTGTAAGTTATGAT
AATACATACTTTCTTTTATAATTTCTAATCAAACTTACTATTATAGTGTC
GAGAGAAGTTCCAAATTACTAAGTGCAATGCATAGTACAGAATTATTGAT
ATAGTGTAGATGTTATCTGTTGATCGCCAGATAAGAAGTTAGTATGGGAA
ACCAGACATTGTTGAAATCTAACTCCTCCTTTTCTTTTCAAAATAATTTA
TCTTTTACACAAATATGAGGCGAGGAGTCTATTTACACTCTTCGATTCTC
TTGTTTGATATATTGCTATGAGAAATGAACATTTTGTCGAGTAAAATCAC
AAATCTTTTTCATGCTTTTCTTTTCCTTTTGTAGACAAAGTTCAAGCTTG
TCAAAAAGTTCATGTGTAAACGTGGCTTTGTGCAATGTATATATATGGTT
GGTGGGACAGTATACCACCCTGGCTGATTAGAAAAATTGTATGAGCTTTA
TCGTTGATGTGCTCTACTGTATCACAGTACTAAGGTTAGTATGTCCACTA
CCCATTTCCCGCCTCACTAATGTTTCTCGCTTACCAGGATCACGTTATAT
TCTTTGGATAAAACTTTGAATTGCCACTTATTATCGCTAGTTATAATTAT
CAATCGAATAGTTTCTCGGGATAAGATCTTCTAAATAGCTTTAGCAAAAT
TTTGTTGATTTTTTTTCTATTTTTTTCATAACCTATTCTCCGTCGAAAAA
TAACGTAAGAATTTTCCAATTACTTTAATTAAAACATACGATTCGAGTAC
ATTGAACTAAAACTTTTCGCGTCAGTGACTGTAATTAGAAAGTCATTTAC
ACCAATTATATTCCTCCTTGTAATTAATGTTTTGTTTTCATGAAATGAGT
GTTATACTAAAACACCTTCAATTAAAATTAGTCTCAAGTTCAATTGCCTT
CAAAAAAGTCTTTTGTTTTGGACGAGTTGTCATCGTATATTTTTTGTTGG
CTCGCTTTCAAATTGGATTACTGTAAAAGAGAAAAATATTTTCATTGCAA
GAAAACCAAAATATTTTGAAAATAATTTAGGAACCGCAAACATTTGATTA
CTCCTAAGCAACAATAAATCTTCTCATTTTGTCTTGTATAGTAAATCTAA
GATAGCTAGCGAAAGGACCCTGTATCTTCTTTGAAGAAAGGTTGAAAGGT
TCCTTCTCATGCATATGGCTCTTACGCTACCATTTTCGTTAGCATTTCTC
TATCTTTTTATGTCTTTCTCTAGTATTTTACTTCCACAGTTAGAAAAAGT
ATATTTCGTTGAAATGCGATAGCGCATGGTATTACTTTCGATTTCTGTTT
GTTCTCTTACCGAGTGATTTCATCATGGAGAGGCTTTGTGTTGCAACAAC
AACAAATTGACGTGTGTAGGTGGTTGCAACAAACAATCTTATAAAGGCAT
TTCTTATGGATTGAATAACTTTATAGATGGAGTTTGGTTGTGAATTTATG
AAATGGCTATGAATGGCTGAGGCCGTGCATTCAGGGTTTTATCAGGAAAA
AGTCTCAATACATAATAAATGCAAGGAGTTTCCTCCAAACCACCATATGG
TCGACCTGTGAAAGAAACATCTCATCAATTTTGCTGTAAAAAAAAGAGAA
AAGTGGTGAAGATGAAATATCTATAAATTGGAAAGAAGCTTCTTTAAATT
TTCCAGTTTTTATTGATTGGTAAAATGGTTATTATAATCATGGTTATTTT
TTCTTCTCTTTATAGACATTGAACAATTAGAAATGTCAGCCTGTGTTTCA
CAAGAAGAATCTCCTTCGGGAATTCGACAATATTATGCTGGCAAATCGGT
TTTCATAACTGGTGCTACTGGATTTATCGGGAAAGTCATCGTTGAAAAGC
TTCTACGTACATGTCCGGATATCAGAGCAATTTATATCCTGATTCGTCCG
AAGAAGGGCATGGATTGTCATAAAAGAATTGAAAAGATATTTTTGCTTCC
GGTAAGTCCGACTCAAAAGTATATGGACGCCCCTTTTATTACTAAACATT
TTCTCAGCACTCAATTTATGCTATATTTAAAGGTTTTCAGCCGTTGAAAA
GATATTTTTGAGAGGTATAATAAAAATTATTTAAGATTTTGAACGCAGAA
AGGATGATCTGTTATGAGAATAGTTAAACTCTATNTTTGTCACGTCTCCA
CGGCGTATTCACAATGTAATCAAGAGAAGGCTATTATGGAGAGATTTTAT
CCTGTCACCATCGAACCTGGCCGCATACTTGAAGCAATGGAGTGAGTATA
CTGGGACCATTACAACACGCTGGAAAGTCCATCAGTAATTTTGTACATTT
TTGTGATATAGTTTTAAACTGTCAAGCATGGATCTATCCATACTTATCTA
TCTATACTTTCTATAGAAAGTATTGGGTCATTTTTTATTAGGCTTTTTTC
AAGATGTGAAAGTGCCTAATATTCCTCTGAGACANGGGGCTTAGGCAAGT
GAAGGTATGGGTATGTGCCGTCCTTAAGGATGCCTTTTTGCGAACCTGGC
AGTCCCTGTAACGTTTCGAAAAATCTGAAAATTGAATCTCAGTCCCATCA
AGGGTCATATAATAGGGAATTTTCAATTTTTTACGTCTAAAAACAACGAA
AGAGTCGTAAAATTCGCAAAATCTTACAGTTTTCCATCATTTTAAGTTCT
GCTAAGGGACCGAGGGTCGACANAAGAAATTTTGGCGGATTTGGCCAAAA
TCCGCCAAATTAAGTTCCCGCCAAAAGTTATATTATCCGTAGTCCGCCAA
ATCAAATTCTCGCCAAATTTAATTTATATAACGTATCGCCAAATTTCGTC
CTATATTAGACTCCAAAATTTGGTTTTCAACGATTTTGCTATCATTTTTT
ACCCTAAATATCTTGCAACCGCCAAACTTAATTTTCACGGCCATCCGCCA
AATTCAATTCCGTCTGAAAAAACTTTTTCAACCATCTGTCAATNGCGGCA
ACCCCCGTCATCCTGTAAACCTAGGATTCCCTCGCCCTTCGGGTGTGCCT
GCACCTTTCAAGTTCGATCTCTAAAAAGTCTTACCTCTGCTTGGTTTTGT
TTGAAATGTTTTCACTTAAACGAGAGGCAATTTCTTCCAAAAAGCCGAAA
AAGTCATGTTATTGTTATTGTTATCTGTTGTTATTCTACGTTAGTTATTA
TATTATGACCTAAGAAAATCTCAAAGTTTTCTCTTTTCTAATACCATACC
AATTTCTTGAACTTTAAACTCAAGTAACTTCGCTTTTATTAGGGTTGCAA
TGGAAATGAATGTGGTAGCCGTCAAAGAAATTCTTACTCTTGCAAAAGCC
CTGAAACATTTAGAGGTATCGGCATTCTTTTCTTTCGAACATACAAACTA
ACCTAAGTCATGCAGGAACATTTATGACAAAACATTCATCAAGCAGCTTA
CTCTATGTTAAATTTTGACATAGATATTTTTAATCAAAATCAAGGCAATT
TTTCTTGTTGTTGGTTTCTAGGTATTTTGTCACGTCTCCACGGCGTATTC
ACAATGTAATCAAGAGAAGGCTATTATGGAGAGATTTTATCCTGTCACCA
TCGAACCTGGCCGCATACTTGAAGCAATGGAGTGAGTATACTGGGACCAT
TACAACACGCTGGAAAGTCCATCAGTAATTTTGTACATTTTTGTGATATA
GTTTTAAACTGTCAAGCATGGATCTATCCATACTTATCTATCTATACTTT
CTATAGAAAGTATTGGGTCATCTTTTATTAGGCTTTTTTCAGTATGATTT
TCATGCAGGCTATGATACGACCGGACAATGGTTTTCAAGATGTGAAAGTG
CCTAATATTCCTCTGAGACATGGCATCACCTCAAACACTTTTCACGTTGT
CAAAAATCTGTGCTTCTCTTTCTTTCCGTCTGTCTATTTGTCTGTTATTC
CGTCTGTAATACTTTAAAGGAAGAAATTTTGGCGGATTTGGCCAAAATCC
GCCAAATTAAGTTCCCGCCAAAAGTTATATTATCCGTAGTCCGCCAAATC
AAATTCTCGCCAAATTTAATTTATATAACGTATCGCCAAATTTCGTCCTA
TATTAGACTCCAAAATTGGGTTTTCAACGATTTTGCTATCATTTTTTACC
CTAAATATCTTGCAAACTTAATTTTCACGGCCATCCGCCAAATTCAATTC
CGTCTGAAAAAACTTTTTCAACCATCTGCCAATGAAATTAAATTCCCGCC
AAAATCTCCTCATTTAATGTAATCGAACTTTGCAGGTGGATGAACGACGA
GATGCTTGCCGGATTCACAGAACCATTGATCGATAAATATCCCAATACCT
ACACATTTACTAAAGCACTCGCTGAGCACCTTATTAAGAAAGAATCTGAA
AATATACCATTTATGATTGTCCGCCCGTCCATTGTCAGTTCCAGTATCTC
TGATCCTTTTCCTGTAAGTTTTGACTTGACTGTATTTCTCGTCTATTTTA
GTTTTTCACTTTGAATTATTATTCTAACCTTACTATTATTTCAGTTTCGT
AAGATTATTAACATTCTACTTGAAAACTGTCAATGGTGTTGTTTATGCAC
GTTGCAATTATCTTGTACCCACATTTTTTCACTTTCAGGGCTGGGTAGAT
AATTACAACGGTGTCAGTGGTATTGTTGTTGCTGTAAGTTGTTCTTTTTT
CTCTCTATCACCAAAAAACAGGTCCCTAGGTTCACTTAACTAAAATTAAC
TGAGATCAAGTAATAGTAATTTTAAAAGACTTTTAATAGGATATGTATTG
TACTATACTTCTACTACTATCTTAGAGATTTTGGGATTTTATCGAAGCAA
TCCTGAGAGGGGTTGTTCGAGGTTAAATAATTGATTTTTGGACCTACCCC
GGTGGAGGTCCTATAAATTAACCTTTGTCCGTTCGTTTGTTCGTTCGTTC
GTTCGTTCGTTATTAGTTTTCGTCATGATTGGCTCATTATTTTTTTCTGA
TTTTTTGCAGAATGTGACGGAGCCTGATTTTCGAAAAAAAAATTTTTTGG
GCAAATTTGGGCCAAAAAAAGGCTAAAAAACGGTTTTTTTTTGTGAAAAA
TTGGATCATTAATTTTTTCTGATTTTTTGCATGAAAGTAGGGTACCATCA
TAGGTAAAAGAAAGCTCAAGCAGATTTTTGCAAACAAATTTTGTAAGCTC
AAAAAACGCATGTTTATCTATAAGAATCTCTATTAATAAGCATACTTCAA
TGTTTTTAGTCAAATTATTCAAATTTTTTATGAGATAGATGTTTTTTTTG
CTCACGAGGACTTACTTTTAAAGAATATGTGTGTTTAGACAAGAAATTTT
GGTTGCTTGGCGTTTTTCTTTTTAGAAAAACTGCCCAAATTCGATATCTT
TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNACTGAATGATTGTTTAATGGTCACGCTCACG
TAGATATCAATTGTATATGTGTTAAATGCATAACCAGGTATGTCCATAAA
AGTATCACTTGTTTTCAAGCGATTTACTCATTTAAAAGGAGGTTTCCCGA
AAGCTGATGCCATAAGTTTTTATCGTATAACTATCCTGTGAGATGTTTAA
TTGATGAATTCGTTTGAAGCAACTCAAAAACTCTTGCGAAATGATTGTAA
ACAACCAGTATGAAGTAAAATACAAAATCAAAACAAATGTCACATGTCAA
AACATGAAATCAATTCAATATGACTGTTCTTCTTGTTGAGCAGATTGTCA
ATTGTGCATGACACACGATGCTCGAACTTAAGTACTTTAACTGATATCCC
ACCTTTAAGCACCTAAATCCAAACAATTGCATCAACAATTGCAGGGAAAA
TGAAAACCTGCAATCTAAAAAATACAAAATCCATAATCGAATTATCGGGA
ACATCTAATTGAAGGCTAAATCACTCGGTAAAAACATGATACAATTTCAA
AAAAATCTACGAAATTCCATACCTCTAACATTATTTATGGAATCGTTTAT
TTTGAAATACAAATACGTAATTCTATAAGAAGAGCCTGTAAAGAAAATCG
AGGAAATTTAATAATGGTCGCCGGTGCTTATTAGAGGTCCTTATGACTAA
TTTTATTTTTGTTCCAGATTTCGCGAGGTCTCCTGCGTTCAATGCATGTC
CCGACGGTTATCAAACACGATATCGTTCCTGTAGACTATGTGTCCAATTG
TATCATCACTTCAACGTGGTACTATGCTACTTCAAGGTTTGTCAATCACC
AACCTTAAGAAATCTTTCATGTGACAAGAACAGTCCGACTGCTCCTTTTT
GATCACACCTTTCTAAAAACAAAGCTGAGTCTGAATAAAAGGTCAGAAAG
AATACCTCATTATTGCCCAAAAATAAAAACAGGGTAAGAACAATTTGAGA
TTTAAAATGCCAAAAAAATGAACAGCTGAGCCTTTAAGAAAAAATTTAGT
GGTTCTCATTAAAAAGAATTTTTTTTTTTCTTCTCCAGAGACAAGCAACC
ATTGATTTGCAACTGTACGTCAAGCGGTGTCAATCCTACATCATTCTGTG
ACCTAGGAAATATGGTTAACGACTTTTACACCTATGACAATCCACTGAAT
TGTATAATACGTCGTCCCAACTTCAAGGTTACAAACAGGTAGATTTTGTT
TTCTTCTATATTCCTGGGTTAATTCTCAACTTCAGTTGAGCTATAATCTG
AGAATGTCTGTATGTATGTCTGTCNACCTCTAACATTATTTATGGAATCG
TTTATTTTGAAATACAAATACGTAATTCTATAAGAAGAGCCTGTAAAGAA
AATCGAGGAAATTTAATAATGGTCGCCGGTGCTTATTAGAGGTCCTTATG
ACTAATTTTATTTTTGTTCCAGATTTCGCGAGGTCTCCTGCGTTCAATGC
ATGTCCCGACGGTTATCAAACACGATATCGTTCCTGTAGACTATGTGTCC
AATTGTATCATCACTTCAACGTGGTACTATGCTACTTCAAGGTTTGTCAA
TCACCAACCTTAAGAAATCTTTCATGTGACAAGAACAGTCCAACTGCTCC
TTTTTGATCACACCTTTCTAAAAACAAAGCTGAGTCTGAGTAAAAGGTCA
GAAAGAATACCTCATTATTGCCCAAAAATAAAAACAGGGTAAGAACAATT
TGAGATTTAAAATGCCAAAAAAATGAACAGCTGAGCCTTTAAGAAAAAAT
TTAGTGGTTCTCATTAAAAAGAATTTTTTTTTTCTTCACCAGAGACAAGC
AACCATTGATTTGCAACTGTACGTCAAGCGGTGTCAATCCTACATCATTC
TGTGACCTAGGAAATATGGTTAACGACTTTTACACCTATGACAATCCACT
GAATTGTATAATACGTCGTCCCAACTTCAAGGTTACAAACAGGTAGATTT
TATTTTTTTCTATATTCCTGGGTTAATTTGTATTGTAATCGGACAATGTA
CTTCCAGTAGATTTGAAGTTGTTTCTAACGTTTGGACTGAACCTTTATCA
ACTTTTTTTTCAATTGCACAGATATATGAATCAGTATTGGCAAGTGTTCA
GTCACTATCTACCAGCTATCATCCTCGATGGATTGTCCATCATCACTGGA
TCAAAACCAAGGTAACACATAACCTCTTACGAAAATGTCACAAGCTACAC
CTTGTCTTAACACCTTGATTGATATTGAAACAATTTTTGTACGTTTGGAA
CCCTTTTTACTTTTTATGGTAACCTTTTTAAACTCTGTACACAATATTTG
ATGGATCATTCACTTATTTTCAGGTTTATGAACATCTACCGAACAATTGA
CACCTCTTTAACAACACTCGACTACTTCATTCAAAACCAGTGGAAGGTAT
AGAACTTCTTCTTTAACTGAAACTTATCAAACGATTTCAGACTGTTGAAA
TATATCACCTTTGCTAACGGACATAAAAATATTAAATCCTCGGGTTTCGT
AAAACAATTCTGCCTCAATTCGTACATGTACTAAGGCTTTTACGTGAGAT
GCAGTTGTCATTATTACATAACTTATTTTTTTAGTGGGGTAACCATAATC
AACAAAAGATATTGAAAGCCATTCCCGAAGATGAAGTCGAGGTAAGATGA
AATTTTAGCCTGAAATGTTTCAAACAAAAATGAAATGAAGATGTTCTCAA
AGTCTGTTTTGATAATGTACAAAAAGCTTCGTATTTATGTTCTGACACGG
CTTGTTGATTGATCATGGTAAATATAATGAAGATGATTGTTTTTCAATTT
TATATACTGATACCTTTATACCTTACAGGCCTTGTCTTTTTTTGGTTGTA
GGTATACGATTTTGATATGCGCAAGATAGTTTGGAAGACATATTATCAAG
AAATGATGACAGGAATAAAATTGTATTTAGTGAAAGAAGATCAGTCAGAA
CTCCCTAAAGCCCGAAGCACACATCGAAGGTTTTTGCCCTACTTTTCAAT
TTCTTTTGATAACTGTTGCCAGGTTCATAGGTTGCTGGCATCCTCATACT
CCTTATAGATTATCAACCATTGGATTTGTGTAGACTATCAGATTTTCTAT
GCTAAATAGATAGCTCCTATGAATTTTTCTAAGTAGCATTTTCTTGCTTT
TAGATACAAAATGGTGCGATGGTTGTCTTCTACGATTTTCATTTTATTGG
CTGGTCGATTCTTCTTCTTGAAATCTGAAAGATTCCGTAAATTATGGTTC
GAAGCTTTGTTCTCCATCTACAAATTTTTGCACCTTCTACGAATTCCAAC
TTTTCGAATTGTATGATATGTGAAATGAAGAAAGGGCATTTTCATTGGTC
GTTCATTTTTCTTGGTCGTTCATTGGTCATTCTGTGAATCTATTTTATTG
AAATTTGTTTCAATTTGGTTTTTCAATCAGATCAACGCGGCTGTACTGAA
ATATGAGGAGTACATAATTTACTCCTTCTTACCGGTGTTTTGATAGATTT
AAAAAAAACTCTCTTAGGTGAATTTATTATAGTTGTAATTTGTTAAATTT
TTCTTCTTAACCCTTAATTATATACCTGGAAGTTTTAATAACTAAATTTT
ATGTGCTAAGCCACCTTTTATGTTGAAAATTGAAAAATGTATATCTATCT
ATCTATCTACTTTTAAAAATTTGATTTATTTTTAATTCGGTACGCACCAA
AGTTAGTCCAATCAATATATTTATTTGTGCTTAATTGCCTTACGGGTTCT
TTATTGAATATTAAGATGCATATAAGCAGAATGTCGTATTCTTGATTATG
ATTTTGCGGAAATTTTTGTATTCGTTATCATTTTTAGGTATTTATTGAAA
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012113XLOC_012113Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021601-exon-sc0000390-1575043694:220059..220080TCONS_00021601-exon-sc0000390-1575043694:220059..220080Clytia hemisphaericaexon
TCONS_00021601-exon-sc0000390-1575043694:219847..219891TCONS_00021601-exon-sc0000390-1575043694:219847..219891Clytia hemisphaericaexon
TCONS_00021601-exon-sc0000390-1575043694:219332..219447TCONS_00021601-exon-sc0000390-1575043694:219332..219447Clytia hemisphaericaexon
TCONS_00021601-exon-sc0000390-1575043694:218873..219025TCONS_00021601-exon-sc0000390-1575043694:218873..219025Clytia hemisphaericaexon
TCONS_00021601-exon-sc0000390-1575043694:218348..218437TCONS_00021601-exon-sc0000390-1575043694:218348..218437Clytia hemisphaericaexon
TCONS_00021601-exon-sc0000390-1575043694:217990..218062TCONS_00021601-exon-sc0000390-1575043694:217990..218062Clytia hemisphaericaexon
TCONS_00021601-exon-sc0000390-1575043694:217669..217725TCONS_00021601-exon-sc0000390-1575043694:217669..217725Clytia hemisphaericaexon
TCONS_00021601-exon-sc0000390-1575043694:217361..217488TCONS_00021601-exon-sc0000390-1575043694:217361..217488Clytia hemisphaericaexon
TCONS_00021601-exon-sc0000390-1575043694:204679..205377TCONS_00021601-exon-sc0000390-1575043694:204679..205377Clytia hemisphaericaexon
TCONS_00021601-exon-sc0000390-1510915933:220059..220080TCONS_00021601-exon-sc0000390-1510915933:220059..220080Clytia hemisphaericaexon
TCONS_00021601-exon-sc0000390-1510915933:219847..219891TCONS_00021601-exon-sc0000390-1510915933:219847..219891Clytia hemisphaericaexon
TCONS_00021601-exon-sc0000390-1510915933:219332..219447TCONS_00021601-exon-sc0000390-1510915933:219332..219447Clytia hemisphaericaexon
TCONS_00021601-exon-sc0000390-1510915933:218873..219025TCONS_00021601-exon-sc0000390-1510915933:218873..219025Clytia hemisphaericaexon
TCONS_00021601-exon-sc0000390-1510915933:218348..218437TCONS_00021601-exon-sc0000390-1510915933:218348..218437Clytia hemisphaericaexon
TCONS_00021601-exon-sc0000390-1510915933:217990..218062TCONS_00021601-exon-sc0000390-1510915933:217990..218062Clytia hemisphaericaexon
TCONS_00021601-exon-sc0000390-1510915933:217669..217725TCONS_00021601-exon-sc0000390-1510915933:217669..217725Clytia hemisphaericaexon
TCONS_00021601-exon-sc0000390-1510915933:217361..217488TCONS_00021601-exon-sc0000390-1510915933:217361..217488Clytia hemisphaericaexon
TCONS_00021601-exon-sc0000390-1510915933:204679..205377TCONS_00021601-exon-sc0000390-1510915933:204679..205377Clytia hemisphaericaexon
TCONS_00021601-exon-sc0000390-1491911889:220059..220080TCONS_00021601-exon-sc0000390-1491911889:220059..220080Clytia hemisphaericaexon
TCONS_00021601-exon-sc0000390-1491911889:219847..219891TCONS_00021601-exon-sc0000390-1491911889:219847..219891Clytia hemisphaericaexon
TCONS_00021601-exon-sc0000390-1491911889:219332..219447TCONS_00021601-exon-sc0000390-1491911889:219332..219447Clytia hemisphaericaexon
TCONS_00021601-exon-sc0000390-1491911889:218873..219025TCONS_00021601-exon-sc0000390-1491911889:218873..219025Clytia hemisphaericaexon
TCONS_00021601-exon-sc0000390-1491911889:218348..218437TCONS_00021601-exon-sc0000390-1491911889:218348..218437Clytia hemisphaericaexon
TCONS_00021601-exon-sc0000390-1491911889:217990..218062TCONS_00021601-exon-sc0000390-1491911889:217990..218062Clytia hemisphaericaexon
TCONS_00021601-exon-sc0000390-1491911889:217669..217725TCONS_00021601-exon-sc0000390-1491911889:217669..217725Clytia hemisphaericaexon
TCONS_00021601-exon-sc0000390-1491911889:217361..217488TCONS_00021601-exon-sc0000390-1491911889:217361..217488Clytia hemisphaericaexon
TCONS_00021601-exon-sc0000390-1491911889:204679..205377TCONS_00021601-exon-sc0000390-1491911889:204679..205377Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000390supercontigsc0000390:204679..220080 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.0844387	0	0	0	0	0	0.00312255	0	0.364409	0	0.00180299	0	0	0	0	0	8.19786e-09	0	0	0	0	0	0.00317154	9.55072e-08
Blast
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BLAST of TCONS_00021601 vs. Swiss-Prot (Human)
Match: FACR2 (Fatty acyl-CoA reductase 2 OS=Homo sapiens GN=FAR2 PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 5.620e-61
Identity = 103/273 (37.73%), Postives = 158/273 (57.88%), Query Frame = 2 
Query:    8 SDPFPGWVDNYNGVSGMMVAVGRGIVRSLYA-PEIKHDIVPVDFVSNCIIVSTWYYGVSRLKTPMICNCTSGNVNPTSFVDMQKVVLPVFSHHYPLTSIFRRPNFAFAPNRFLNQYWQMVSHYIPAIILDGLTVLVGMKPRFMNIYRTIDSSISTLDFFIQNEWKWGHTEFSKILKAVPEDDKEAFDFDMRKIDWSNYYADMTIGVKKFLVKDDMAELPKARNIHRRYKMVRWLSSTIFILLAGRFFFLKSERFRKLWFEALFSIYKFLHLLR 823
             +PFPGWVDN NG +G+++A G+G +R++ A P    D++PVD V N ++   WY  V R K+ ++ + TSGN+NP ++  M   VL  F    P    FRRPN  F  N F +QYW  VSH  PAII D    L G KPR   +   +  ++S L++FI   W+W       ++  +  +D+  F+FD+R+++W  Y  +  +GVKK+L+K+DMA +PKA+   +R + + +L +T   L+A R    +S+  R +WF  +   YKFL   R
Sbjct:  237 QEPFPGWVDNINGPNGIIIATGKGFLRAIKATPMAVADVIPVDTVVNLMLAVGWYTAVHRPKSTLVYHITSGNMNPCNWHKMGVQVLATF-EKIPFERPFRRPNANFTSNSFTSQYWNAVSHRAPAIIYDCYLRLTGRKPRMTKLMNRLLRTVSMLEYFINRSWEWSTYNTEMLMSELSPEDQRVFNFDVRQLNWLEYIENYVLGVKKYLLKEDMAGIPKAKQRLKRLRNIHYLFNTALFLIAWRLLIARSQMARNVWFFIVSFCYKFLSYFR 508
The following BLAST results are available for this feature:
BLAST of TCONS_00021601 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FACR25.620e-6137.73Fatty acyl-CoA reductase 2 OS=Homo sapiens GN=FAR2... [more]
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