TCONS_00021566 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021566
Unique NameTCONS_00021566
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length420

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021566 ID=TCONS_00021566|Name=TCONS_00021566|organism=Clytia hemisphaerica|type=transcript|length=420bp
TCTGGATCCACAAAGACACATGCCCTGATCGCAAGATAACTTCTAGTTGG
AGATTAAGGCGTTCACGGCATGTGCTTAAAGGAAAACAGCTGTGAGTCTC
TGTTTTTAGGTgcttatatttgtttttaagtacgGGTTCCACCAGGACAT
TTTCTGTGCGCGAAGTGGATGTTGTTTATACAGTAGAAGAATCAAAGCAG
TCAGTTGAAAAAGAACCGCAGAGATAGTAGTTATCATGTGAAAAGGaggt
aaaaaatttttgatttttctgactcaactcgagtgtgtcaatgaggtgaa
ttttctggtctgtaaaatttatcaaattttgcgattttcataatgaagag
tattgagttcaaatttaaacgtataaacaagttcagaatattgtttaatt
gatttgatgtgaaaatataa
Run BLAST on NCBI

transcript from alignment at sc0000389:152859..153278

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021566 ID=TCONS_00021566|Name=TCONS_00021566|organism=Clytia hemisphaerica|type=transcript|length=420bp|location=Sequence derived from alignment at sc0000389:152859..153278 (Clytia hemisphaerica)
ttatattttcacatcaaatcaattaaacaatattctgaacttgtttatac
gtttaaatttgaactcaatactcttcattatgaaaatcgcaaaatttgat
aaattttacagaccagaaaattcacctcattgacacactcgagttgagtc
agaaaaatcaaaaattttttacctCCTTTTCACATGATAACTACTATCTC
TGCGGTTCTTTTTCAACTGACTGCTTTGATTCTTCTACTGTATAAACAAC
ATCCACTTCGCGCACAGAAAATGTCCTGGTGGAACCcgtacttaaaaaca
aatataagcACCTAAAAACAGAGACTCACAGCTGTTTTCCTTTAAGCACA
TGCCGTGAACGCCTTAATCTCCAACTAGAAGTTATCTTGCGATCAGGGCA
TGTGTCTTTGTGGATCCAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012092XLOC_012092Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021566-exon-sc0000389-1491911889:152859..153278TCONS_00021566-exon-sc0000389-1491911889:152859..153278Clytia hemisphaericaexon
TCONS_00021566-exon-sc0000389-1510915933:152859..153278TCONS_00021566-exon-sc0000389-1510915933:152859..153278Clytia hemisphaericaexon
TCONS_00021566-exon-sc0000389-1575043694:152859..153278TCONS_00021566-exon-sc0000389-1575043694:152859..153278Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000389supercontigsc0000389:152859..153278 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.168141	0	0.655044	0.748321	0.824238	0.39084	0.864687	0.405795	0	0.35101	0.851747	0.622755	0.223651	1.09557	0.435043	0.689702	1.13601	0.459461	0.71495	0.188019	1.07059	0.720669	0	0	0.18087	0.915552	0.461109	1.17153	0.311788	0.516693
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021566 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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