|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021494 ID=TCONS_00021494|Name=TCONS_00021494|organism=Clytia hemisphaerica|type=transcript|length=1735bp
ATAACAATAACCTTGCAAAAATTGAATGCTCTGGAAGGTACCGTAGAAAT
TGTATAAAAAGGAACCAAATGCTTTTATAAGACGCACGACTTACTCAAAT
CGTCTGTTCATACTTTACTTCAACCAAGTTTAAagAGTTTCAAGTGCATT
GAGAATGCGTTTCGGAGTCGTGGTAACAGATGATGATCCACTCTGGGGTG
GAGAGAAAGGCGTCGGTGATTACATCATTAAAAGATTCGAAGGAAGAAAC
TCCTCCCGAGATGAGTTTACAGCCATTCACGGCGTCAGTGGTCAATTACC
GGACAAAAAGGATATTATTACATATGATGGTTTCATATTCACTGGATCAC
ACCACTCCGTTAACGATGATTCACCCTGGATGCGACGTCTTGAAGTTTTC
ATCCGCAACGCGTATCAGACGTCACAGGAATTCGGCCGCCCTCGCATGGT
TGGTATTTGCTTCGGTCATCAGTTGATTGCCAAAGCCTTAGGAGGACACA
TCGGTGGCAATCCAGACAAGAAATTCAACTTCGGTAGCATTGATATTAAT
GTTGATGAAGGTTTTCTTAGCAATGATTTTGCAACTCAGGTTTCCTTTAA
AAAGCGTAGAAAATCCTCTATTACGATGATGAAATTTCACGGTGAATGTG
TTTTAGAGGCGCCCAAGATTGCAAGACTTATCGGCTCATCAGAACAATGT
AAGAATGAGATCCTAATGTATGGTAACACAGTACTGACCACGCAAGGTCA
TCCAGAGTATACCAAAAATGTAATGGCGTTAACAAACTCTAAGATCATGT
CACGCATCGGGCGTCTCGATGAAGATGAAATCAAACAGAATCTTGATCAG
ATTGTAAATGATGATGCGGAGAATTGTACTGACATGGTGAACGCATTTCT
TCACCACATGCCGTTATCTATTAATGATCGAATGTCAAATCTAGCAATCA
CTGGTAAGAACCAGAAGAAGAATGCGACATCCAAACGAGCAATGTTCAAA
CGTACGGAAACAATTGCTGCATGATTGATAacttaatttgaaaaatgaca
atTATGAATTAATCTTAAAGTTGATATTTAATTGTATAGATAGCACAGAT
ATCTCCACGCAGACAAACTTTCAATCGTCTTCGTTATCACGGGAGTTAAG
GTCTAGCCGAAGAAGCGGTGATTCGAACCAAAAAGTGACCCATTGGTCTT
CAATATATCCACTAACTTTTTACCCTGGAGCCGATAAATTTTCCACTCAC
TTTAGATTTTGTTCTCCcctgaatgaaaaagttacacCGGTTACTAGGAC
ATTTAATGTGTTTAACCTATTTATATGACAGAAATATGTATGATGGATAC
AGAAGCCAGGGGTCGAAAAATATACAAACTTAGGATTTTgacttttcgtt
ttttttttgcataagtACTTGTTTTAGGTTTTAACTTCTTTCGAAAATAT
GTaggtcaaaactttttttactaGTAGTAGTGCTGCGATATTTAAGGGGT
GGTTTTATTTTAAGCAGCTTTACATGAGTTTGTTTAGTTATAGCTTAGCG
CAtattgaaatttcttttctaAATTTAGCGAATTTTTGAGCTATTTTGTA
CTCTTTTTGCTACCTTTGTACATAGCTAAACGCTAGCTTAAGAGACTTTT
TATATAgctaaatttcttaaaatttatcTTCTAAGTTTTGTTTGAAAGGT
TGTAAGTAGAACTGACAACtgttaaaaaagggaaa Run BLAST on NCBI transcript from alignment at sc0000388:182671..187804+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021494 ID=TCONS_00021494|Name=TCONS_00021494|organism=Clytia hemisphaerica|type=transcript|length=5134bp|location=Sequence derived from alignment at sc0000388:182671..187804+ (Clytia hemisphaerica)
ATAACAATAACCTTGCAAAAATTGAATGCTCTGGAAGGTACCGTAGAAAT
TGTATAAAAAGGAACCAAATGCTTTTATAAGACGCACGACTTACTCAAAT
CGTCTGTTCATACTTTACTTCAACCAAGTTTAAaggtaagtttttatttc
ttaacttttttgtaaTTCCCAAAGTTTTGCCTGCTTTTAAGAAAAGGAAC
TTTGGCGGAACTTTTGGGTTTTATTTCACCCCCTTACGGAATTAAAAAAC
AATCCACATTTCAAGTACAATTAATGTAACAGCTATGGCTTTCTTTGGAT
GATTTCAAATTTCTTCCAGTCTAATTTATTCCGCCGATCCGATTGACACT
TTTATAAACTTCCACCAACATAAACTGGCAAGTTCGGCGTATGAATTGAC
TCACAATTAGtattcttcaaaatttcttcaTACTCTTGTCTCCCAAATAG
ACCGGAAAAGCAGGGGGgtgggaaaattttctaaattctaataagcgggg
ggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNgggggggggggtggattttttctctcttaaca
attagcggggggcgtctattcgggagacaagagtaattgCAATTTGAGGA
ATTATCTTTTAGCCCTACAATATGTTCCGTTCATAAGGTTGTGAGCCAAT
TTACTGCAGAACATCCAGATAAGAGGACAATATATCTAAAAGCAGATAAA
ATAAAACTATTGAACCATAAATCAGCTTGGTCTTGAATCAAAAACGACCT
AATCCTAAAGATAGTTTTTGTTTTCTGGGAGGCCGTTTTACAAATATCCT
AAATACACACCAAGACTTTAAGCGCTTTCATATTTCGATAATTATATTAG
CATTCTTTGTACCCGGAAACCGTAACACGCCCATTGGCTCATAACGATAA
CTTTGCAAAGATTGACTGCTTTGAAAGAAGAATTAGCTTAGAAATTGTAT
AAAAAGGAATCAAAAGGGGCATTCAAGTTCCCTTCGAAAAGTAAATGCTT
TTATGAGACGCACAACTTACTCAAATCGTCTTCTCTTACTTTACTTCAAC
CAAGTTTAAGcgtaaatttttatttccacTTAACTTTTTATTTCACCACC
TTACGGAATGCAAAAAAGCCCACATTCCAAGCACTCTTAATATAACAGCT
TTGAGATTTCAGGGGGTTGAATCGTTTTGGACAGCCCCGTAAAACACACT
GTTTACTAGTATAAAAGGGGTACGAATGTCAGTTTCCCAGATGAAACGAA
TTGTTTTTAGATTGACGTTATGTATGTTAAATAgtcgttgaaacaacgtt
gtgtgccagcttgaCCAAGTCATGTGAGGATATGAAGTACCTTGTGtgtt
taaatattaaaaattataCTACTGACATGCAAAATTGATCAAAGAAcctt
cagtcattttcagtcatatGATTTCTacacaaaatattttaattaataAA
TTCATCAGAGCTTGGTTCTTTGTGAATGAGATAAATCATGTATTTTTCAT
ACCTTTATTTAGCTTATTGTGGgatattttcaaattaataATTAAATTTC
CATCAATGAACTCTCAATATGTATGGAAGtattttactaatttttttaCT
ATAAAACCTTTTGCACTTTTcctaaaaatcttcaaaaaacgaTTTTACTA
CGGGAAGAACGTTTGCACtgaaaaaaagtctttaaagaattttcctttat
tcaaaaatattttcgagaTGGGACGGCAAACTCAAAGGTTAGTTTTACTT
CAATTTTCCTTACATGAGAACCAATTTTATCGGCCATAATTTTAACTCTC
ACTTTAATTTGAAGTGTTCAAAATATACTGGTCTCGTTCGAATTATATGA
atcactcccttctcacagatccggtcAAATTATTTCAGCCAGTGGTGATA
AAAATGACGGGATgatgatggggattgatattcccatattttttatgata
tggatttcaatttttttcgttttcaagtcagaaaattcattggGGAGTGA
AATATAGTAAATACTTTGCAtcgaggattggtttatttgattattttctg
ttgggatataaattggagtataattttccaccagggactatattttggta
aatttttccgatgggaaggggtcccaatgggtctgtgagaaggaggtgtt
aTAAAATATCTTATATGCGGAACATTTTGTAAGTAACTTTGCATCTATCT
GCTCCTGAAGTACAATTATATGAATGCATCACCGAAAGgtgagaatttca
aaaattacagggaaaaagctggttttaaGCCCCCTTTTGCTTTATTTAAA
GAAATAGAGCATATTCAAAAACATCTTagcctttattttctggttgtTAA
GAGAAAATGTGCACGTATACAAAAACATTCCATAAAAAGAATAATTTATA
ATAAAAAGTGTCCCAAGGAATAACTATAATGTCATATTATGTCAACGTTC
ATTCAAATATTACTATTGAAAAACCTATTGTCTTATCTCTAATCTGCTTA
ATCTCGAAATAGATCTTATATTATGTTTTTATGAGTATTACATATATAAA
TTGAATAGAATAcacacccgggggggggtactagggttggcgaatgaggg
gtatgtgcggtcGGGACCttcgaaaaccgacccttagagagactttttta
attttttttttcgatctttgaaaaaagtcatacccttagagagattttat
cacaatttttttttcgatttttgaaaaaactatacccttagagagacttt
attacaattttttctctggaaatcaaaaaattccctaaaaatcctgaagt
ttcggacccttagagagactaatttaaaacttttagatttttccgaccct
tagagagactttgaaaggtgaaaaaaccgacccttacggtccgcacatac
ccatcatccatttttgcttagtacccccccccccgaaatACACAGAAGTT
TCACTTTCTGTCACTCTACCTTTGCCACGCCAATAATATATACTGCAAAC
TTTCGCGAGAAAGGTCTGAGTAGTATTTGGAGGGAATAAGATAAAGCACA
TCATCATGAGACTTTCAACATGTTTACTTTACAGAGTTTCAAGTGCATTG
AGAATGCGTTTCGGAGTCGTGGTAACAGATGATGATCCACTCTGGGGTGG
AGAGAAAGGCGTCGGTGATTACATCATTAAAAGATTCGAAGGAAGAAACT
CCTCCCGAGATGAGTTTACAGCCATTCACGGCGTCAGTGGTCAATTACCG
GACAAAAAGGATATTATTACATATGATGGTTTCATATTCACTGGATCACA
CCACTCCGTTAACGATGATTCACCCTGGATGCGACGTCTTGAAGTTTTCA
TCCGCAACGCGTATCAGACGTCACAGGAATTCGGCCGCCCTCGCATGGTT
GGTATTTGCTTCGGTCATCAGTTGATTGCCAAAGCCTTAGGAGGACACAT
CGGTGGCAATCCAGACAAGAAATTCAACTTCGGTAGCATTGATATTAATG
TTGATGAAGGTTTTCTTAGCAATGATTTTGCAACTCAGGTTTCCTTTAAA
AAGCGTAGAAAATCCTCTATTACGATGATGAAATTTCACGGTGAATGTGT
TTTAGAGGCGCCCAAGATTGCAAGACTTATCGGCTCATCAGAACAATGTA
AGAATGAGATCCTAATGTATGGTAACACAGTACTGACCACGCAAGGTCAT
CCAGAGTATACCAAAAATGTAATGGCGTTAACAAACTCTAAGATCATGTC
ACGCATCGGGCGTCTCGATGAAGATGAAATCAAACAGAATCTTGATCAGA
TTGTAAATGATGATGCGGAGAATTGTACTGACATGGTGAACGCATTTCTT
CACCACATGCCGTTATCTATTAATGATCGAATGTCAAATCTAGCAATCAC
TGGTAAGAACCAGAAGAAGAATGCGACATCCAAACGAGCAATGTTCAAAC
GTACGGAAACAATTGCTGCATGATTGATAacttaatttgaaaaatgacaa
tTATGAATTAATCTTAAAGTTGATATTTAATTGTATAGATAGCACAGATA
TCTCCACGCAGACAAACTTTCAATCGTCTTCGTTATCACGGGAGTTAAGG
TCTAGCCGAAGAAGCGGTGATTCGAACCAAAAAGTGACCCATTGGTCTTC
AATATATCCACTAACTTTTTACCCTGGAGCCGATAAATTTTCCACTCACT
TTAGATTTTGTTCTCCcctgaatgaaaaagttacacCGGTTACTAGGACA
TTTAATGTGTTTAACCTATTTATATGACAGAAATATGTATGATGGATACA
GAAGCCAGGGGTCGAAAAATATACAAACTTAGGATTTTgacttttcgttt
tttttttgcataagtACTTGTTTTAGGTTTTAACTTCTTTCGAAAATATG
TaggtcaaaactttttttactaGTAGTAGTGCTGCGATATTTAAGGGGTG
GTTTTATTTTAAGCAGCTTTACATGAGTTTGTTTAGTTATAGCTTAGCGC
AtattgaaatttcttttctaAATTTAGCGAATTTTTGAGCTATTTTGTAC
TCTTTTTGCTACCTTTGTACATAGCTAAACGCTAGCTTAAGAGACTTTTT
ATATAgctaaatttcttaaaatttatcTTCTAAGTTTTGTTTGAAAGGTT
GTAAGTAGAACTGACAACtgttaaaaaagggaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021494-exon-sc0000388-1491911889:182671..182805 | TCONS_00021494-exon-sc0000388-1491911889:182671..182805 | Clytia hemisphaerica | exon |
| TCONS_00021494-exon-sc0000388-1510915933:182671..182805 | TCONS_00021494-exon-sc0000388-1510915933:182671..182805 | Clytia hemisphaerica | exon |
| TCONS_00021494-exon-sc0000388-1575043694:182671..182805 | TCONS_00021494-exon-sc0000388-1575043694:182671..182805 | Clytia hemisphaerica | exon |
| TCONS_00021494-exon-sc0000388-1491911889:186205..187804 | TCONS_00021494-exon-sc0000388-1491911889:186205..187804 | Clytia hemisphaerica | exon |
| TCONS_00021494-exon-sc0000388-1510915933:186205..187804 | TCONS_00021494-exon-sc0000388-1510915933:186205..187804 | Clytia hemisphaerica | exon |
| TCONS_00021494-exon-sc0000388-1575043694:186205..187804 | TCONS_00021494-exon-sc0000388-1575043694:186205..187804 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000388 | supercontig | sc0000388:182671..187804 + |
Blast
The following BLAST results are available for this feature:
|
