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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021477 ID=TCONS_00021477|Name=TCONS_00021477|organism=Clytia hemisphaerica|type=transcript|length=2334bp
AGGGTGATGTCATTCCCTTTTGTCAGCTTTCCTCCTCTTATCGACAATGT
ATTACATTTATCCAAACCGAAACTCATACAAATATCTTTGCTGAACATGG
ATACAATTTCGAGAAGGTCTTGAAGTCGTTCATCGCAGTTCGCATAGAGC
TTTAGGTCGTCCATGAATAGAAGGTGACTGACTACGGTACGGTTGTTTCT
GGGGCCTATAGCGTATCCGATCGACGATCTTTTGATGAGCCACGATAGAG
GTAACAGGCTTATGACAAAGTTTAACCCAGAAGGACAATCACCTTGGAAG
ATACCGTTGTGGATGTTGATCGGATCGGAAGATACGGTAGTGTCTTGCGT
TGAGATGTTGAGGGTGGTCTTCCATTTGGTCATGGTGGTGGTGAAGAAGT
TGATGAGTTTCTCAGGAAATTTGTGTATCTGGAGAGATCTTTTTAGCCAG
TCATGCGGGACAGAATCAAAAGCTTTTCGATAATCAATCCAGGCTGTCGA
TAGGTTGCGTTTTGATTTTCTTGCATTCTCCAGGATCATGTTGTCAATTA
AGAGTTGGTCTACTGTCCCTTGGTTACCTGAGATCCCACCCTTTTGTTCT
TCGGGAATTAAGTCGAATGTAGTTAGGTGGGTTTTCATACGTTTCGTGAT
GATGCTGGTCATAATTTTGTATGTGATGGGAAGACATGTGATGGGGCGGT
AGTTGGACGGAATTTCAGTTTGAGGTTTCTTTGGTATGAGTGTTGTCCTG
CCGGAAGTGAACCAGGGAGGGATGGATTGGGGATCATCCATCAAACGGTT
GTATATCTGGACCTTTTGATCGTGGATTGACTCGAATTTGTTCCACCAAT
AGTTCTGTAGACAGTCAATGCCGGGGCTTTTCCAGTTCGCAAAGTTCTTT
ATTGCCTCTGACATTTCTTCTTTTGTTATTGGTTGGAATTCATACGGTTG
TATGTCGATTGTCGCTTCGTAATCGGCAATCCACGGGGCGTTGTTGTTGA
AATTCGACTCCGTACCAAGAATTGGTCTCCAGAAGTCTTCGATCTCTTGT
TTAGAAGGTGCTTTGGTGATCGGTATTGCGCATCCTCTAAGTTTTTTGTA
GAATTTGTCGGGGCTGTTGACAAATTCTCTGTTTTGATTAAACTGGTTTG
ATCGCTCTTTGTATCGTTTCAGACGGTTGTTTTTTGCAAGGAGTTTTTGT
TTGAGACGTTCACAAGTTAATTTACGTTCTCGATCGTTCGTAATGTTGAA
TTTTCGTTTAATTCGTTCATTGTTTCGTCGCATCTTAGGTGACGGATTGG
CAATGTTCATTTGATCGATTTGGCTGATTTCCTTGCGAAGTTCAAGAATC
GTTGCGTTGATTCGTTTGATCCAATTGTGTGTTTTCTTTATCGTGATTTT
GTCGGAAACGATGCACTTTTTTCGCAGATTTGAGTGTTCGATAGCTGTGA
TGGCAAATGCATACGTCATATCGTTGATTTGCGTGATGTCGTTGCATTGG
TATtgattgacgtcaattatttcgtTAACAATATCACAGCTTcgtgaaag
ttttttgatatctATTTTTGAAGGTTTCCgaaatttttcccttttttcga
AAGGAGTTAGTTTAGATATAAAATAATGTTCCTCAAACCTCGCTCGAAGA
TTCTCCTCTTCATCCCTCTGAATCATAACTCTTTCCTGTACTTGTTGGGC
CTCGTTTCCTGCCGGTAGAATGTCGTTTTCAGCTGGTGGTGGCTCTAGAG
GTGTGTTGGTTGGTTCTTCGGGTTCTCGGATAATCTCGGGCGGATTTTcg
ttttgaacattttctcCTTCGTCAACTTGCCGATCTTGGTTGTGCTCTTG
GTCAACCTCTTGTCTGATGGTGTCTATCTCGCGGTTCGTCGGCCAGTTGC
CTCGAAGTCgttggttttgttgattttctgcCTTGACGAAAATCTGTCGC
TTTTGGTCGCAAATGCGTTGCTCGCTGAAGTTCTCTCCATACCTCTGAAT
AAAAAGGTTATGGAGGGTTCTTCTGTATGTTGTTGGAGTTGTTTTGATGG
CGATGAAATAGCTCCGGACAATGTGTACATTCATTTCTTTCGTCCATTTC
ATCCGGCGCcggttgttattgttgttgttgttttggttTCTGTCAGGTGT
TCCTTCAATAGTTTGGGAAGATCTTGGCAGTTCATCGTCCAAAACTTCTC
CTGGTTGGTTTTCCATTGTTTGATGTGCGTTCTTAGTTTGATCCAGCTGG
ATTTGATCGTTTCCAGGTGGAATCTTTTTTATCTTCTCGAGAGCAGACAA
AGACACGTCTGCACTCTTTCGACGTcaaataatt Run BLAST on NCBI protein sequence of TCONS_00021477-protein >TCONS_00021477-protein ID=TCONS_00021477-protein|Name=TCONS_00021477-protein|organism=Clytia hemisphaerica|type=polypeptide|length=738bp
MENQPGEVLDDELPRSSQTIEGTPDRNQNNNNNNNRRRMKWTKEMNVHIV
RSYFIAIKTTPTTYRRTLHNLFIQRYGENFSEQRICDQKRQIFVKAENQQ
NQRLRGNWPTNREIDTIRQEVDQEHNQDRQVDEGENVQNENPPEIIREPE
EPTNTPLEPPPAENDILPAGNEAQQVQERVMIQRDEEENLRARFEEHYFI
SKLTPFEKREKFRKPSKIDIKKLSRSCDIVNEIIDVNQYQCNDITQINDM
TYAFAITAIEHSNLRKKCIVSDKITIKKTHNWIKRINATILELRKEISQI
DQMNIANPSPKMRRNNERIKRKFNITNDRERKLTCERLKQKLLAKNNRLK
RYKERSNQFNQNREFVNSPDKFYKKLRGCAIPITKAPSKQEIEDFWRPIL
GTESNFNNNAPWIADYEATIDIQPYEFQPITKEEMSEAIKNFANWKSPGI
DCLQNYWWNKFESIHDQKVQIYNRLMDDPQSIPPWFTSGRTTLIPKKPQT
EIPSNYRPITCLPITYKIMTSIITKRMKTHLTTFDLIPEEQKGGISGNQG
TVDQLLIDNMILENARKSKRNLSTAWIDYRKAFDSVPHDWLKRSLQIHKF
PEKLINFFTTTMTKWKTTLNISTQDTTVSSDPINIHNGIFQGDCPSGLNF
VISLLPLSWLIKRSSIGYAIGPRNNRTVVSHLLFMDDLKLYANCDERLQD
LLEIVSMFSKDICMSFGLDKCNTLSIRGGKLTKGNDIT Run BLAST on NCBI transcript from alignment at sc0000386:193651..195984 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021477 ID=TCONS_00021477|Name=TCONS_00021477|organism=Clytia hemisphaerica|type=transcript|length=2334bp|location=Sequence derived from alignment at sc0000386:193651..195984 (Clytia hemisphaerica)
aattatttgACGTCGAAAGAGTGCAGACGTGTCTTTGTCTGCTCTCGAGA
AGATAAAAAAGATTCCACCTGGAAACGATCAAATCCAGCTGGATCAAACT
AAGAACGCACATCAAACAATGGAAAACCAACCAGGAGAAGTTTTGGACGA
TGAACTGCCAAGATCTTCCCAAACTATTGAAGGAACACCTGACAGAaacc
aaaacaacaacaacaataacaaccgGCGCCGGATGAAATGGACGAAAGAA
ATGAATGTACACATTGTCCGGAGCTATTTCATCGCCATCAAAACAACTCC
AACAACATACAGAAGAACCCTCCATAACCTTTTTATTCAGAGGTATGGAG
AGAACTTCAGCGAGCAACGCATTTGCGACCAAAAGCGACAGATTTTCGTC
AAGgcagaaaatcaacaaaaccaacGACTTCGAGGCAACTGGCCGACGAA
CCGCGAGATAGACACCATCAGACAAGAGGTTGACCAAGAGCACAACCAAG
ATCGGCAAGTTGACGAAGgagaaaatgttcaaaacgAAAATCCGCCCGAG
ATTATCCGAGAACCCGAAGAACCAACCAACACACCTCTAGAGCCACCACC
AGCTGAAAACGACATTCTACCGGCAGGAAACGAGGCCCAACAAGTACAGG
AAAGAGTTATGATTCAGAGGGATGAAGAGGAGAATCTTCGAGCGAGGTTT
GAGGAACATTATTTTATATCTAAACTAACTCCTTtcgaaaaaagggaaaa
atttcGGAAACCTTCAAAAATagatatcaaaaaactttcacgAAGCTGTG
ATATTGTTAacgaaataattgacgtcaatcaATACCAATGCAACGACATC
ACGCAAATCAACGATATGACGTATGCATTTGCCATCACAGCTATCGAACA
CTCAAATCTGCGAAAAAAGTGCATCGTTTCCGACAAAATCACGATAAAGA
AAACACACAATTGGATCAAACGAATCAACGCAACGATTCTTGAACTTCGC
AAGGAAATCAGCCAAATCGATCAAATGAACATTGCCAATCCGTCACCTAA
GATGCGACGAAACAATGAACGAATTAAACGAAAATTCAACATTACGAACG
ATCGAGAACGTAAATTAACTTGTGAACGTCTCAAACAAAAACTCCTTGCA
AAAAACAACCGTCTGAAACGATACAAAGAGCGATCAAACCAGTTTAATCA
AAACAGAGAATTTGTCAACAGCCCCGACAAATTCTACAAAAAACTTAGAG
GATGCGCAATACCGATCACCAAAGCACCTTCTAAACAAGAGATCGAAGAC
TTCTGGAGACCAATTCTTGGTACGGAGTCGAATTTCAACAACAACGCCCC
GTGGATTGCCGATTACGAAGCGACAATCGACATACAACCGTATGAATTCC
AACCAATAACAAAAGAAGAAATGTCAGAGGCAATAAAGAACTTTGCGAAC
TGGAAAAGCCCCGGCATTGACTGTCTACAGAACTATTGGTGGAACAAATT
CGAGTCAATCCACGATCAAAAGGTCCAGATATACAACCGTTTGATGGATG
ATCCCCAATCCATCCCTCCCTGGTTCACTTCCGGCAGGACAACACTCATA
CCAAAGAAACCTCAAACTGAAATTCCGTCCAACTACCGCCCCATCACATG
TCTTCCCATCACATACAAAATTATGACCAGCATCATCACGAAACGTATGA
AAACCCACCTAACTACATTCGACTTAATTCCCGAAGAACAAAAGGGTGGG
ATCTCAGGTAACCAAGGGACAGTAGACCAACTCTTAATTGACAACATGAT
CCTGGAGAATGCAAGAAAATCAAAACGCAACCTATCGACAGCCTGGATTG
ATTATCGAAAAGCTTTTGATTCTGTCCCGCATGACTGGCTAAAAAGATCT
CTCCAGATACACAAATTTCCTGAGAAACTCATCAACTTCTTCACCACCAC
CATGACCAAATGGAAGACCACCCTCAACATCTCAACGCAAGACACTACCG
TATCTTCCGATCCGATCAACATCCACAACGGTATCTTCCAAGGTGATTGT
CCTTCTGGGTTAAACTTTGTCATAAGCCTGTTACCTCTATCGTGGCTCAT
CAAAAGATCGTCGATCGGATACGCTATAGGCCCCAGAAACAACCGTACCG
TAGTCAGTCACCTTCTATTCATGGACGACCTAAAGCTCTATGCGAACTGC
GATGAACGACTTCAAGACCTTCTCGAAATTGTATCCATGTTCAGCAAAGA
TATTTGTATGAGTTTCGGTTTGGATAAATGTAATACATTGTCGATAAGAG
GAGGAAAGCTGACAAAAGGGAATGACATCACCCT Coding sequence (CDS) from alignment at sc0000386:193651..195984 >TCONS_00021477 ID=TCONS_00021477|Name=TCONS_00021477|organism=Clytia hemisphaerica|type=CDS|length=2214bp|location=Sequence derived from alignment at sc0000386:193651..195984 (Clytia hemisphaerica)
ATGGAAAACCAACCAGGAGAAGTTTTGGACGATGAACTGCCAAGATCTTC
CCAAACTATTGAAGGAACACCTGACAGAaaccaaaacaacaacaacaata
acaaccgGCGCCGGATGAAATGGACGAAAGAAATGAATGTACACATTGTC
CGGAGCTATTTCATCGCCATCAAAACAACTCCAACAACATACAGAAGAAC
CCTCCATAACCTTTTTATTCAGAGGTATGGAGAGAACTTCAGCGAGCAAC
GCATTTGCGACCAAAAGCGACAGATTTTCGTCAAGgcagaaaatcaacaa
aaccaacGACTTCGAGGCAACTGGCCGACGAACCGCGAGATAGACACCAT
CAGACAAGAGGTTGACCAAGAGCACAACCAAGATCGGCAAGTTGACGAAG
gagaaaatgttcaaaacgAAAATCCGCCCGAGATTATCCGAGAACCCGAA
GAACCAACCAACACACCTCTAGAGCCACCACCAGCTGAAAACGACATTCT
ACCGGCAGGAAACGAGGCCCAACAAGTACAGGAAAGAGTTATGATTCAGA
GGGATGAAGAGGAGAATCTTCGAGCGAGGTTTGAGGAACATTATTTTATA
TCTAAACTAACTCCTTtcgaaaaaagggaaaaatttcGGAAACCTTCAAA
AATagatatcaaaaaactttcacgAAGCTGTGATATTGTTAacgaaataa
ttgacgtcaatcaATACCAATGCAACGACATCACGCAAATCAACGATATG
ACGTATGCATTTGCCATCACAGCTATCGAACACTCAAATCTGCGAAAAAA
GTGCATCGTTTCCGACAAAATCACGATAAAGAAAACACACAATTGGATCA
AACGAATCAACGCAACGATTCTTGAACTTCGCAAGGAAATCAGCCAAATC
GATCAAATGAACATTGCCAATCCGTCACCTAAGATGCGACGAAACAATGA
ACGAATTAAACGAAAATTCAACATTACGAACGATCGAGAACGTAAATTAA
CTTGTGAACGTCTCAAACAAAAACTCCTTGCAAAAAACAACCGTCTGAAA
CGATACAAAGAGCGATCAAACCAGTTTAATCAAAACAGAGAATTTGTCAA
CAGCCCCGACAAATTCTACAAAAAACTTAGAGGATGCGCAATACCGATCA
CCAAAGCACCTTCTAAACAAGAGATCGAAGACTTCTGGAGACCAATTCTT
GGTACGGAGTCGAATTTCAACAACAACGCCCCGTGGATTGCCGATTACGA
AGCGACAATCGACATACAACCGTATGAATTCCAACCAATAACAAAAGAAG
AAATGTCAGAGGCAATAAAGAACTTTGCGAACTGGAAAAGCCCCGGCATT
GACTGTCTACAGAACTATTGGTGGAACAAATTCGAGTCAATCCACGATCA
AAAGGTCCAGATATACAACCGTTTGATGGATGATCCCCAATCCATCCCTC
CCTGGTTCACTTCCGGCAGGACAACACTCATACCAAAGAAACCTCAAACT
GAAATTCCGTCCAACTACCGCCCCATCACATGTCTTCCCATCACATACAA
AATTATGACCAGCATCATCACGAAACGTATGAAAACCCACCTAACTACAT
TCGACTTAATTCCCGAAGAACAAAAGGGTGGGATCTCAGGTAACCAAGGG
ACAGTAGACCAACTCTTAATTGACAACATGATCCTGGAGAATGCAAGAAA
ATCAAAACGCAACCTATCGACAGCCTGGATTGATTATCGAAAAGCTTTTG
ATTCTGTCCCGCATGACTGGCTAAAAAGATCTCTCCAGATACACAAATTT
CCTGAGAAACTCATCAACTTCTTCACCACCACCATGACCAAATGGAAGAC
CACCCTCAACATCTCAACGCAAGACACTACCGTATCTTCCGATCCGATCA
ACATCCACAACGGTATCTTCCAAGGTGATTGTCCTTCTGGGTTAAACTTT
GTCATAAGCCTGTTACCTCTATCGTGGCTCATCAAAAGATCGTCGATCGG
ATACGCTATAGGCCCCAGAAACAACCGTACCGTAGTCAGTCACCTTCTAT
TCATGGACGACCTAAAGCTCTATGCGAACTGCGATGAACGACTTCAAGAC
CTTCTCGAAATTGTATCCATGTTCAGCAAAGATATTTGTATGAGTTTCGG
TTTGGATAAATGTAATACATTGTCGATAAGAGGAGGAAAGCTGACAAAAG
GGAATGACATCACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021477-exon-sc0000386-1491911889:193651..195984 | TCONS_00021477-exon-sc0000386-1491911889:193651..195984 | Clytia hemisphaerica | exon |
| TCONS_00021477-exon-sc0000386-1510915933:193651..195984 | TCONS_00021477-exon-sc0000386-1510915933:193651..195984 | Clytia hemisphaerica | exon |
| TCONS_00021477-exon-sc0000386-1575043694:193651..195984 | TCONS_00021477-exon-sc0000386-1575043694:193651..195984 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000386 | supercontig | sc0000386:193651..195984 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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