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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00021477-protein ID=TCONS_00021477-protein|Name=TCONS_00021477-protein|organism=Clytia hemisphaerica|type=polypeptide|length=738bp
MENQPGEVLDDELPRSSQTIEGTPDRNQNNNNNNNRRRMKWTKEMNVHIV
RSYFIAIKTTPTTYRRTLHNLFIQRYGENFSEQRICDQKRQIFVKAENQQ
NQRLRGNWPTNREIDTIRQEVDQEHNQDRQVDEGENVQNENPPEIIREPE
EPTNTPLEPPPAENDILPAGNEAQQVQERVMIQRDEEENLRARFEEHYFI
SKLTPFEKREKFRKPSKIDIKKLSRSCDIVNEIIDVNQYQCNDITQINDM
TYAFAITAIEHSNLRKKCIVSDKITIKKTHNWIKRINATILELRKEISQI
DQMNIANPSPKMRRNNERIKRKFNITNDRERKLTCERLKQKLLAKNNRLK
RYKERSNQFNQNREFVNSPDKFYKKLRGCAIPITKAPSKQEIEDFWRPIL
GTESNFNNNAPWIADYEATIDIQPYEFQPITKEEMSEAIKNFANWKSPGI
DCLQNYWWNKFESIHDQKVQIYNRLMDDPQSIPPWFTSGRTTLIPKKPQT
EIPSNYRPITCLPITYKIMTSIITKRMKTHLTTFDLIPEEQKGGISGNQG
TVDQLLIDNMILENARKSKRNLSTAWIDYRKAFDSVPHDWLKRSLQIHKF
PEKLINFFTTTMTKWKTTLNISTQDTTVSSDPINIHNGIFQGDCPSGLNF
VISLLPLSWLIKRSSIGYAIGPRNNRTVVSHLLFMDDLKLYANCDERLQD
LLEIVSMFSKDICMSFGLDKCNTLSIRGGKLTKGNDIT Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 335..362 |
| None | No IPR available | COILS | Coil | Coil | coord: 173..193 |
| None | No IPR available | COILS | Coil | Coil | coord: 283..303 |
| None | No IPR available | GENE3D | 3.30.70.270 | | coord: 539..731
e-value: 7.7E-17
score: 61.0 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 120..167 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..40 |
| None | No IPR available | CDD | cd01650 | RT_nLTR_like | coord: 489..733
e-value: 5.14382E-40
score: 145.897 |
| None | No IPR available | SUPERFAMILY | 56672 | DNA/RNA polymerases | coord: 404..708 |
| IPR000477 | Reverse transcriptase domain | PFAM | PF00078 | RVT_1 | coord: 494..726
e-value: 2.5E-27
score: 95.7 |
| IPR000477 | Reverse transcriptase domain | PROSITE | PS50878 | RT_POL | coord: 475..737
score: 10.741 |
Blast
The following BLAST results are available for this feature:
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