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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021467 ID=TCONS_00021467|Name=TCONS_00021467|organism=Clytia hemisphaerica|type=transcript|length=1168bpRun BLAST on NCBI protein sequence of TCONS_00021467-protein >TCONS_00021467-protein ID=TCONS_00021467-protein|Name=TCONS_00021467-protein|organism=Clytia hemisphaerica|type=polypeptide|length=376bp MDDGGWDLSDFVNKYTTKSTTTYSSSPMTKTIYHANTGGIDTSMDNSLQSRun BLAST on NCBI transcript from alignment at sc0000386:204690..218335- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021467 ID=TCONS_00021467|Name=TCONS_00021467|organism=Clytia hemisphaerica|type=transcript|length=13646bp|location=Sequence derived from alignment at sc0000386:204690..218335- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000386:204690..218335- >TCONS_00021467 ID=TCONS_00021467|Name=TCONS_00021467|organism=Clytia hemisphaerica|type=CDS|length=11280bp|location=Sequence derived from alignment at sc0000386:204690..218335- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00021467 vs. Swiss-Prot (Human)
Match: ADIP (Afadin- and alpha-actinin-binding protein OS=Homo sapiens GN=SSX2IP PE=1 SV=3) HSP 1 Score: 136.732 bits (343), Expect = 3.962e-35 Identity = 82/242 (33.88%), Postives = 156/242 (64.46%), Query Frame = 1
Query: 304 VFCTAENLQERLSFLNQELGMHGFHSLFSRKPNSRQQSNRVEDLDLARLVSCTYELLRRQHLQAKVKDDLEERHLRSENDNEYLLQNQVRLKQDLENLKRESVLLLCREKEQVEKSRMLTQEVKAERDEKRKLKSDIEHLKKQFYHESKRTEKEISRLKEKVHSLLNDKSQERKFGIQVLNALQRADGKRSTWKTAG--KKNEDEMYKMIISNFEDKEKQLLSENQAMRETLTDVRNQLSSV 1023
FCT +N+++ +S+L+QEL GF SL+ S+ + + E L++ +++C ELL Q ++++E ++L+ +D ++L +LK+ LE +RE + L R+++ K+R L Q +K E+DE +KL++ I Q+ H+ KR E+E ++LKE++H L+ +K +++K + +LN + RADGKR +W+T +NEDEMYK++++++E ++KQ+L EN +++ L ++ ++ S+
Sbjct: 55 AFCTEDNIEQSISYLDQELTTFGFPSLYEE---SKGKETKRE-LNIVAVLNCMNELLVLQRKNLLAQENVETQNLKLGSDMDHLQSCYSKLKEQLETSRREMIGLQERDRQLQCKNRNLHQLLKNEKDEVQKLQNIIASRATQYNHDMKRKEREYNKLKERLHQLVMNK-KDKKIAMDILNYVGRADGKRGSWRTGKTEARNEDEMYKILLNDYEYRQKQILMENAELKKVLQQMKKEMISL 291 The following BLAST results are available for this feature:
BLAST of TCONS_00021467 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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