TCONS_00021467-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00021467-protein
Unique Name	TCONS_00021467-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	376

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00021467-protein ID=TCONS_00021467-protein|Name=TCONS_00021467-protein|organism=Clytia hemisphaerica|type=polypeptide|length=376bp
MDDGGWDLSDFVNKYTTKSTTTYSSSPMTKTIYHANTGGIDTSMDNSLQS
VCAPSPSKMEKVEHDDVMEKVQHDDVMEKVEHDDVMEDVFCTAENLQERL
SFLNQELGMHGFHSLFSRKPNSRQQSNRVEDLDLARLVSCTYELLRRQHL
QAKVKDDLEERHLRSENDNEYLLQNQVRLKQDLENLKRESVLLLCREKEQ
VEKSRMLTQEVKAERDEKRKLKSDIEHLKKQFYHESKRTEKEISRLKEKV
HSLLNDKSQERKFGIQVLNALQRADGKRSTWKTAGKKNEDEMYKMIISNF
EDKEKQLLSENQAMRETLTDVRNQLSSVDTSIGSELGEEESRQLQMPFFM
VKTEVEDKFQQIIANLRDRLENTTPK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_012033	XLOC_012033	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00021467	TCONS_00021467	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR021622	Afadin/alpha-actinin-bd

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 204..256
None	No IPR available	COILS	Coil	Coil	coord: 169..189
None	No IPR available	COILS	Coil	Coil	coord: 297..324
None	No IPR available	COILS	Coil	Coil	coord: 86..106
IPR021622	Afadin/alpha-actinin-binding	PFAM	PF11559	ADIP	coord: 98..251 e-value: 4.1E-19 score: 69.1

Blast

[Close]

BLAST of TCONS_00021467-protein vs. Swiss-Prot (Human)
Match: ADIP (Afadin- and alpha-actinin-binding protein OS=Homo sapiens GN=SSX2IP PE=1 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 6.866e-36
Identity = 80/242 (33.06%), Postives = 153/242 (63.22%), Query Frame = 0

Query:   89 VFCTAENLQERLSFLNQELGMHGFHSLFSRKPNSRQQSNRVEDLDLARLVSCTYELLRRQHLQAKVKDDLEERHLRSENDNEYLLQNQVRLKQDLENLKRESVLLLCREKEQVEKSRMLTQEVKAERDEKRKLKSDIEHLKKQFYHESKRTEKEISRLKEKVHSLLNDKSQERKFGIQVLNALQRADGKRSTWKTAG--KKNEDEMYKMIISNFEDKEKQLLSENQAMRETLTDVRNQLSSV 328
             FCT +N+++ +S+L+QEL   GF SL+        +     +L++  +++C  ELL  Q      ++++E ++L+  +D ++L     +LK+ LE  +RE + L  R+++   K+R L Q +K E+DE +KL++ I     Q+ H+ KR E+E ++LKE++H L+ +K +++K  + +LN + RADGKR +W+T     +NEDEMYK++++++E ++KQ+L EN  +++ L  ++ ++ S+
Sbjct:   55 AFCTEDNIEQSISYLDQELTTFGFPSLYEESKGKETK----RELNIVAVLNCMNELLVLQRKNLLAQENVETQNLKLGSDMDHLQSCYSKLKEQLETSRREMIGLQERDRQLQCKNRNLHQLLKNEKDEVQKLQNIIASRATQYNHDMKRKEREYNKLKERLHQLVMNK-KDKKIAMDILNYVGRADGKRGSWRTGKTEARNEDEMYKILLNDYEYRQKQILMENAELKKVLQQMKKEMISL 291

The following BLAST results are available for this feature:

BLAST of TCONS_00021467-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00021467-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ADIP	6.866e-36	33.06	Afadin- and alpha-actinin-binding protein OS=Homo ...	[more]

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TCONS_00021467-protein (polypeptide) - C. hemisphaerica