|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021415 ID=TCONS_00021415|Name=TCONS_00021415|organism=Clytia hemisphaerica|type=transcript|length=1261bp
tttcgcggatttgggatTGATTCTTGGGTAATTGGTGTCATGGACTCGTC
TTTTTGCATCGGAACATCTTGATCCTGATCTTCTACGGAATGCATGGGAA
TACCTTCATCCAGACTTTCTACGAGAGCCACATTTGAGTCGGTTCGTTGT
CTCCCTCTCAGAATTTCAACATTTATAGTCCTAGACACTGATGTTTCTTC
TCTGTGTCGATCCTCCGAAATATTTGGAGCATTCATTTCCATAGAATTGG
TACGTTCAACTGGATTTTCGTTTTTAGGACTGCTTTTAGGTCCATCTGGT
TGATCAATCATTTGTGGTGACGGACCTACGTTTTGTTGTCCACTCGACGA
TTGTTGACCATCCGTCGTTGAATTTTCAGAAGTCACTTTAGACGTCGAAG
TGTCGTCTTGTGGTTGGTTTCGGCGACTAACCCATTTTCCATTCCTAACG
TCTTGTTTAAACTTTTTCCATTCTTGTTCCTCCTCGAAAATTTCGATCTT
CAATTTACTGCTCAAAGCCCACATCACTTCACTGTGTTTCTTTCTCGCTT
CTTCGTCgtcatctttcttctttttagaaGTCGGCGCAAAAGGTTCTGTT
AGTAGCGTTTCTTGTATCTGTTTCCGAACTTCTTTGTACTCGGAAATCTT
TTCACAGGACACTAAACGCAACATCATAAGTTGGAAATTTCTGGACGAGT
CAACATGCAAGTTATGTCTCTCAAACGGCTTGAAAACACCCACCATGCTG
GAAACCATGGCTGCGAAACCAGTAACTATGGGAACGACATAATTAGGAAT
CGATCCCTCCATAACAGAGAAAATGGTAGCCACAGAAGTGAGAATGATGA
TAGCAATGTTAGCCCACTGATGTGTTTTGTCCCAAAAAACTGCTGCTTTG
CGGTGTGATTTATTTCTCTCTTCAGTTAGATCAATGTAATTGCGTAGATT
TTGAGAGATGGTCGATGCTGATGGCTTCTTGTcatcttttttgtcattta
CGGCTTGCCTTCCTTCCTCATTTGGAACGGGTTGTGTTGGCATAGGTTTG
CTCATCGCTAATACCGATATTTGATTAATATTGCCCTTGATAACTTTCTT
CTCTTTGATTACACTTGAAATTCTTCCTTTTTGTAAAAGTCGTACTTAAG
TAAGAGTTCCTTTTCGATGAAAGCACGGTTAAAGAAACTACTCGTTGTTT
GCTCTTGTTAATACCACCTTTGTTTATGGTACAAATTCTGCTTCACATCC
GTTTATTATGg Run BLAST on NCBI protein sequence of TCONS_00021415-protein >TCONS_00021415-protein ID=TCONS_00021415-protein|Name=TCONS_00021415-protein|organism=Clytia hemisphaerica|type=polypeptide|length=351bp
MSKPMPTQPVPNEEGRQAVNDKKDDKKPSASTISQNLRNYIDLTEERNKS
HRKAAVFWDKTHQWANIAIIILTSVATIFSVMEGSIPNYVVPIVTGFAAM
VSSMVGVFKPFERHNLHVDSSRNFQLMMLRLVSCEKISEYKEVRKQIQET
LLTEPFAPTSKKKKDDDEEARKKHSEVMWALSSKLKIEIFEEEQEWKKFK
QDVRNGKWVSRRNQPQDDTSTSKVTSENSTTDGQQSSSGQQNVGPSPQMI
DQPDGPKSSPKNENPVERTNSMEMNAPNISEDRHREETSVSRTINVEILR
GRQRTDSNVALVESLDEGIPMHSVEDQDQDVPMQKDESMTPITQESIPNP
R Run BLAST on NCBI transcript from alignment at sc0000385:361375..362635 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021415 ID=TCONS_00021415|Name=TCONS_00021415|organism=Clytia hemisphaerica|type=transcript|length=1261bp|location=Sequence derived from alignment at sc0000385:361375..362635 (Clytia hemisphaerica)
cCATAATAAACGGATGTGAAGCAGAATTTGTACCATAAACAAAGGTGGTA
TTAACAAGAGCAAACAACGAGTAGTTTCTTTAACCGTGCTTTCATCGAAA
AGGAACTCTTACTTAAGTACGACTTTTACAAAAAGGAAGAATTTCAAGTG
TAATCAAAGAGAAGAAAGTTATCAAGGGCAATATTAATCAAATATCGGTA
TTAGCGATGAGCAAACCTATGCCAACACAACCCGTTCCAAATGAGGAAGG
AAGGCAAGCCGtaaatgacaaaaaagatgACAAGAAGCCATCAGCATCGA
CCATCTCTCAAAATCTACGCAATTACATTGATCTAACTGAAGAGAGAAAT
AAATCACACCGCAAAGCAGCAGTTTTTTGGGACAAAACACATCAGTGGGC
TAACATTGCTATCATCATTCTCACTTCTGTGGCTACCATTTTCTCTGTTA
TGGAGGGATCGATTCCTAATTATGTCGTTCCCATAGTTACTGGTTTCGCA
GCCATGGTTTCCAGCATGGTGGGTGTTTTCAAGCCGTTTGAGAGACATAA
CTTGCATGTTGACTCGTCCAGAAATTTCCAACTTATGATGTTGCGTTTAG
TGTCCTGTGAAAAGATTTCCGAGTACAAAGAAGTTCGGAAACAGATACAA
GAAACGCTACTAACAGAACCTTTTGCGCCGACttctaaaaagaagaaaga
tgacGACGAAGAAGCGAGAAAGAAACACAGTGAAGTGATGTGGGCTTTGA
GCAGTAAATTGAAGATCGAAATTTTCGAGGAGGAACAAGAATGGAAAAAG
TTTAAACAAGACGTTAGGAATGGAAAATGGGTTAGTCGCCGAAACCAACC
ACAAGACGACACTTCGACGTCTAAAGTGACTTCTGAAAATTCAACGACGG
ATGGTCAACAATCGTCGAGTGGACAACAAAACGTAGGTCCGTCACCACAA
ATGATTGATCAACCAGATGGACCTAAAAGCAGTCCTAAAAACGAAAATCC
AGTTGAACGTACCAATTCTATGGAAATGAATGCTCCAAATATTTCGGAGG
ATCGACACAGAGAAGAAACATCAGTGTCTAGGACTATAAATGTTGAAATT
CTGAGAGGGAGACAACGAACCGACTCAAATGTGGCTCTCGTAGAAAGTCT
GGATGAAGGTATTCCCATGCATTCCGTAGAAGATCAGGATCAAGATGTTC
CGATGCAAAAAGACGAGTCCATGACACCAATTACCCAAGAATCAatccca
aatccgcgaaa Coding sequence (CDS) from alignment at sc0000385:361375..362635 >TCONS_00021415 ID=TCONS_00021415|Name=TCONS_00021415|organism=Clytia hemisphaerica|type=CDS|length=1053bp|location=Sequence derived from alignment at sc0000385:361375..362635 (Clytia hemisphaerica)
ATGAGCAAACCTATGCCAACACAACCCGTTCCAAATGAGGAAGGAAGGCA
AGCCGtaaatgacaaaaaagatgACAAGAAGCCATCAGCATCGACCATCT
CTCAAAATCTACGCAATTACATTGATCTAACTGAAGAGAGAAATAAATCA
CACCGCAAAGCAGCAGTTTTTTGGGACAAAACACATCAGTGGGCTAACAT
TGCTATCATCATTCTCACTTCTGTGGCTACCATTTTCTCTGTTATGGAGG
GATCGATTCCTAATTATGTCGTTCCCATAGTTACTGGTTTCGCAGCCATG
GTTTCCAGCATGGTGGGTGTTTTCAAGCCGTTTGAGAGACATAACTTGCA
TGTTGACTCGTCCAGAAATTTCCAACTTATGATGTTGCGTTTAGTGTCCT
GTGAAAAGATTTCCGAGTACAAAGAAGTTCGGAAACAGATACAAGAAACG
CTACTAACAGAACCTTTTGCGCCGACttctaaaaagaagaaagatgacGA
CGAAGAAGCGAGAAAGAAACACAGTGAAGTGATGTGGGCTTTGAGCAGTA
AATTGAAGATCGAAATTTTCGAGGAGGAACAAGAATGGAAAAAGTTTAAA
CAAGACGTTAGGAATGGAAAATGGGTTAGTCGCCGAAACCAACCACAAGA
CGACACTTCGACGTCTAAAGTGACTTCTGAAAATTCAACGACGGATGGTC
AACAATCGTCGAGTGGACAACAAAACGTAGGTCCGTCACCACAAATGATT
GATCAACCAGATGGACCTAAAAGCAGTCCTAAAAACGAAAATCCAGTTGA
ACGTACCAATTCTATGGAAATGAATGCTCCAAATATTTCGGAGGATCGAC
ACAGAGAAGAAACATCAGTGTCTAGGACTATAAATGTTGAAATTCTGAGA
GGGAGACAACGAACCGACTCAAATGTGGCTCTCGTAGAAAGTCTGGATGA
AGGTATTCCCATGCATTCCGTAGAAGATCAGGATCAAGATGTTCCGATGC
AAAAAGACGAGTCCATGACACCAATTACCCAAGAATCAatcccaaatccg
cga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021415-exon-sc0000385-1491911889:361375..362635 | TCONS_00021415-exon-sc0000385-1491911889:361375..362635 | Clytia hemisphaerica | exon |
| TCONS_00021415-exon-sc0000385-1510915933:361375..362635 | TCONS_00021415-exon-sc0000385-1510915933:361375..362635 | Clytia hemisphaerica | exon |
| TCONS_00021415-exon-sc0000385-1575043694:361375..362635 | TCONS_00021415-exon-sc0000385-1575043694:361375..362635 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000385 | supercontig | sc0000385:361375..362635 . |
Blast
The following BLAST results are available for this feature:
|
