TCONS_00021394 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021394
Unique NameTCONS_00021394
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length506

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021394 ID=TCONS_00021394|Name=TCONS_00021394|organism=Clytia hemisphaerica|type=transcript|length=506bp
TGGAAATTCACATGACATCCTGATCAGCAAAACGTCTATAGATATTGATT
ATCGGAAACAACCAATATCCAATTCATTGATTGGTTGGATAGGTCATCAA
TTAATTATATATAAAGTGACAGGTAATAATTAATTATTCCATAGACAGGG
AATAATTCATAGTTATTCAAGAATGTTGTGATGGCTCAAGTAAGAACCGG
ACTGCATTTCTCTGTCTTGTTCTGCTGTAGTAGTCTGTAGTACccctgat
tttttgttttcgtCAGTGTTTGCTgggcagccattttgaatttttttgac
atCTGTACTTTGCAATTTTGTGATCTCTACAGAAACGATGATTTTGCCCG
AGTAGAGCACCAGTGCCCTATCTAGATGTCTCACGCAACATGCAAAACAA
GGATGAATCTGGAATGCTTTGGAACACTTATCAACGGTTGTTGCGCCCAC
ATGTTTTGTTGTTCTCCACCGTTTGGTTTCTGGGAGGTAAATAAAcctgt
ttttgc
Run BLAST on NCBI

protein sequence of TCONS_00021394-protein

>TCONS_00021394-protein ID=TCONS_00021394-protein|Name=TCONS_00021394-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
KNRFIYLPETKRWRTTKHVGATTVDKCSKAFQIHPCFACCVRHLDRALVL
YSGKIIVSVEITKLQSTDVKKIQNGCPANTDENKKSGVLQTTTAEQDREM
QSGSYLSHHNILE
Run BLAST on NCBI

transcript from alignment at sc0000385:25388..25893

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021394 ID=TCONS_00021394|Name=TCONS_00021394|organism=Clytia hemisphaerica|type=transcript|length=506bp|location=Sequence derived from alignment at sc0000385:25388..25893 (Clytia hemisphaerica)
gcaaaaacaggTTTATTTACCTCCCAGAAACCAAACGGTGGAGAACAACA
AAACATGTGGGCGCAACAACCGTTGATAAGTGTTCCAAAGCATTCCAGAT
TCATCCTTGTTTTGCATGTTGCGTGAGACATCTAGATAGGGCACTGGTGC
TCTACTCGGGCAAAATCATCGTTTCTGTAGAGATCACAAAATTGCAAAGT
ACAGatgtcaaaaaaattcaaaatggctgcccAGCAAACACTGacgaaaa
caaaaaatcagggGTACTACAGACTACTACAGCAGAACAAGACAGAGAAA
TGCAGTCCGGTTCTTACTTGAGCCATCACAACATTCTTGAATAACTATGA
ATTATTCCCTGTCTATGGAATAATTAATTATTACCTGTCACTTTATATAT
AATTAATTGATGACCTATCCAACCAATCAATGAATTGGATATTGGTTGTT
TCCGATAATCAATATCTATAGACGTTTTGCTGATCAGGATGTCATGTGAA
TTTCCA

Coding sequence (CDS) from alignment at sc0000385:25388..25893

>TCONS_00021394 ID=TCONS_00021394|Name=TCONS_00021394|organism=Clytia hemisphaerica|type=CDS|length=342bp|location=Sequence derived from alignment at sc0000385:25388..25893 (Clytia hemisphaerica)
aaaaacaggTTTATTTACCTCCCAGAAACCAAACGGTGGAGAACAACAAA
ACATGTGGGCGCAACAACCGTTGATAAGTGTTCCAAAGCATTCCAGATTC
ATCCTTGTTTTGCATGTTGCGTGAGACATCTAGATAGGGCACTGGTGCTC
TACTCGGGCAAAATCATCGTTTCTGTAGAGATCACAAAATTGCAAAGTAC
AGatgtcaaaaaaattcaaaatggctgcccAGCAAACACTGacgaaaaca
aaaaatcagggGTACTACAGACTACTACAGCAGAACAAGACAGAGAAATG
CAGTCCGGTTCTTACTTGAGCCATCACAACATTCTTGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011979XLOC_011979Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021394-proteinTCONS_00021394-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021394-exon-sc0000385-1491911889:25388..25893TCONS_00021394-exon-sc0000385-1491911889:25388..25893Clytia hemisphaericaexon
TCONS_00021394-exon-sc0000385-1510915933:25388..25893TCONS_00021394-exon-sc0000385-1510915933:25388..25893Clytia hemisphaericaexon
TCONS_00021394-exon-sc0000385-1575043694:25388..25893TCONS_00021394-exon-sc0000385-1575043694:25388..25893Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000385supercontigsc0000385:25388..25893 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.03071	1.74729	1.08201	0.396968	0.64436	0	0.153577	0	0	0	0	0	0.0794449	0	0	0	0	0	0	0	0.115495	0	0	0.124519	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021394 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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