TCONS_00021330 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021330
Unique NameTCONS_00021330
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2552

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021330 ID=TCONS_00021330|Name=TCONS_00021330|organism=Clytia hemisphaerica|type=transcript|length=2552bp
gcccaccatcaagcataattcaattgtcaatgaaactgatttttgaagcc
ggaactttctatttctttcccCCAGTGAAATGTTTGTGAATATTTTGATA
TTCTATACCAACATATAATTAACAGAGAATAAAACTTAAAATGCCAAAAA
GGAAACAAGAAAGCAGAAAAGTTCGACCTGAAATATTGCCGTCCAAAGAC
GAAAATGAGTTTCTATTGGACAAGTTGCAGAATGAAGAAGATGATATGAG
TGACAGTGACGAGAGTGTTTATTCAGGTTTGGAAGAAGAAGCGGACACTG
ATTCTGAAGAAGGAGATGAAGTCAAAGAAATCAATAGtgaaggagaagaa
gaaaatgaagaatcgACTGATGCTGATGACGAGGATGACTCagaagaaga
ggaagaagaagaagaagaagaagaatcaaGCGATGAAGATGAGcttcaaa
tcaaacaaactaAATCATCCTCTGATACGAATGAAGATCATGCTGAAAAT
GAGAAAGGTGGTGATGTTGTGAAAGAGGTCCGCAAGAAAGCAGTGTTTGA
AGATGTTGACACGTCTGACGAAGAGGACATTCGAAACACGGTTGGTAACA
TCCCTATGGAGTGGTACAAAGACTATTTGCACATCGGTTATGATCTCGAT
GGGAATAAAATCGGTAAAAAAGAACAAGGCGATCAATTGGATAACTTTCT
CACCAAAATGGAAGATCCTGATTATTGGAGGACAGTTCGTGATAAAGTCA
ACATGGAAGACATCAAACTGACTGATGAAGAGATCGAGATCATTCAAAGG
ATTGAAGGAGGACAATATGCTGATAAAGATTTTGATCCTTATGAACCTTA
CGTTGATCATTTCACCAGTGAAACTATGATTCATCCCATCAAAGATAACC
CGTCAACTAAGAGGAGTTTCACACCTTCCATTTGGGAACATAAAAAGGTC
ATGAAAATCGTGAGAGCGATTCGTAACGGTTGGATAAAACCGAAAGTGAA
GTCGGATGGACAACCCAAATATTATTTGATATGGGGAAAAGATGACAGGC
CAAATGATCATCCGATGAGATGGGCCGCTCCAAAGCTAAAACTTCCTGGA
CACGAAGAATCTTATAACCCTCCACCAGAATATCTTCCCACTGAAGAAGA
GAAAGCAGCATGGGAAGCGTTGGATCCCGAGGATCGGCCACAAAATTATT
TGTCACAGAAATTCGATGCTCTACGGAAAGTTCCCGGATATTCCAATTTC
ATTCAAGAGCGTTTCGAGCGTTGTTTGGACTTGTATCTTTGTCCTCGTCA
AAGGAAAGTCAGATTGAACATCAATCCGGAAGACTTGATTCCCAAACTAC
CAAGACCTAAAGACCTTCAACCTTTCCCAACCACTGAGGGAGTAaGGTAC
AAAGGTCACACAGACGTCGTGAGATGTATATCAGTCGATCCAACCGGTCA
ATGGTTAGCTTCAGGAAGTTCTGACAATACCATACGTTTCTGGGAGGTGA
TTACAGGACGTTGTATGAAGACTTTGAACGTTGAGGGAACAGTGAACAGT
TTGGAATGGAATCCACAAGACACTATACCCATTCTTGTAGCTGCCGTTGA
TACAGATATGTTTATAATCAATCCTGGATTGGGTGATAAATTGTtatgca
aaaatattgataaCAAAATGAACACAACGAGTGAAGATTTCCAACAAAGC
GAACTTGCAACGTGGTCAAAATGCAATAAGAAAGACAATGAACTTGGTTT
CCGGTTAAAGATCTCACACTCGAAGCCAGTCAAACAAGTTACTTGGCACG
GTAAAGGAGACTACATTGCTGCTGTGATTCCAGACGGTGAAAGCAAGTCA
GTGGCCATTCATCAATTATCAAAAGGAAAATCACAGTGTCCATTCAAGAA
ATCTAAAGGACAAATCCAATGCGTCCGATTTCATCCCACAAGACCTTTCT
TCTTTGTCGCTACGCAGCGATACATCCGTGTATACAACCTTCAGAAACAA
GAATTAACAAAGAAATTAGTATCAGGAATCAAATGGATTTCGTGTCTCGA
TATACATCCTACAGGCGACAATCTTATCATTGGAGGTTATGATAAACGAT
TATGCTGGTTCGACATGGATCTCTCTACTAAACCTTACAAAACTCTAAGa
caTCACAAGCGAGCGATTCGACAAGTGACATATCATAAACAATATCCTCT
CTTCGCCTCTTCATCTGAcgacggcactgtcatcattagCCATGGAAAAG
TATTCAGCGATTTGATGCAGAACCCTTTGATCGTACCATTGAAAATTTTA
CGGGGCCATCAAGTCACCAATGATCTAGGCGTTGTTGATTGCCAGTTCCA
TCCACATCAACCGTGGGTGTTCTCAGCCGGTGCCGATAAAACCATACGGC
TGTTCACTTGAGTGGCTTTTGTACTTTTTATAGGTTTTTTTTCCGTTGGA
AGATATTTTGTATCTAAATTCAATAAGACATTGTGTATTTTATCTTTTGT
CTGTTGCAGAGAATTGCTTCATTGTCATAAATCTTGTAATCtttaaatgg
ag
Run BLAST on NCBI

transcript from alignment at sc0000385:79443..90530+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021330 ID=TCONS_00021330|Name=TCONS_00021330|organism=Clytia hemisphaerica|type=transcript|length=11088bp|location=Sequence derived from alignment at sc0000385:79443..90530+ (Clytia hemisphaerica)
gcccaccatcaagcataattcaattgtcaatgaaactgatttttgaagcc
ggaactttctatttctttcccCCAGTGAAATGTTTGTGAATATTTTGATA
TTCTATACCAACATATAATTAACAGAGAATAAAACTTAAAATGCCAAAAA
GGAAACAAGAAAGCAGAAAAGTTCGACCTGAAATATTGCCGTCCAAAGAC
GAAAATGAGGTATTGTACCTTTTTTTACTATCTACGATGGCCCCGAGGTT
TCTCCACTTCTAGAAAAAGACAAttcaagaagagaagtaaaaattgaaga
agggaagtaaaaattttaagaagagaagtaatttttttgtattacttcac
tgaaaattttacttttcttcttgatttttttacttctctttcaAGCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCTCGCC
AATGTAGAAATTTAATCACAATTTCGATACTTAAAGACATTTTACTtccc
tttttaaaatttttacttcccttCTCGAAATATTTACTTCccttgtttaa
atttttacttctcttcttgaaactttcagaactttttttaGAAGTGGAGA
AACCTCGGGGCCATCGTAACTATCCTTTTTCTCCAGTTTGCTATATTAAA
CACCTTACATGATTAATTCCCTTTGTTAATGTTTTTGGAGGAGAATCGaa
tgaatctaaaaaaaaagcAATGTGGAGATGGAATTTCTCCCAATTCATTC
CCTCTGTGCAGTCAGTAAACAAGAATTTACTTCACTGAGTGGCGATTGAG
TCTTCTGGTTCCACATGGACCCAtagctcaatggtagagcaaatgcccgc
aaatggcatggttgtgagtttgaGTCTCACCAGAACCGTTGGTTTTCCAG
TGGTTCTGGTGGCTAGTTAGAAGACAATATGAGAGTGACTGTATTcactt
tattgaaaaaaaagtttttctcgtTATTGCTCTATCTAAATTTTCATGTa
gcttttattattttcttctttgtaTTTTATTCACAGTTTCTATTGGACAA
GTTGCAGAATGAAGAAGATGATATGAGTGACAGTGACGAGAGTGTTTATT
CAGGTTTGGAAGAAGAAGCGGACACTGATTCTGAAGAAGGAGATGAAGTC
AAAGAAATCAATAGtgaaggagaagaagaaaatgaagaatcgACTGATGC
TGATGACGAGGTATATCATGTAACACTGATTCTCAAATAAGATTTTAGCC
TTATATCTTAATCTTCAGTCTTCAAATCCTCGAAAGAGAATTTATAATCA
AGGCATTGTGACTTGCCATGACACTCAAAAGGTTTAGCCTTGCGCTagca
tcgctctcccagtgtTTTCCGggtgtcatggtatacgccatggcttggca
gctccCGTCTATCAAGTTGCAGTGTCTGTAAGCGCCGTGATTATTATttt
taggacccattccgaATGTATATCTCATCTTTACATGCTTTTTAGGATGA
CTCagaagaagaggaagaagaagaagaagaagaagaatcaaGCGATGAAG
ATGAGcttcaaatcaaacaaactaAATCATCCTCTGATACGAATGAAGAT
CATGCTGAAAATGAGAAAGGTGGTGATGTTGTGAAAGAGGTCCGCAAGAA
AGCAGTGTTTGAAGATGTTGACACGTCTGACGAAGAGGTTTGAATATAAC
TTTGTCTGTAATCGCTTTAATGAGATAAAGTCTCACGATATGAAATTTTA
CAAATCAAGTTTAGTTGCTACGGGAGTTCCAAAAGGCCTCATTTGccaaa
tattcaaaattcaGTCAGCATGGACATTTTTACAGTAAAAAGGCACAACA
ATTGTGAAAATATCATAGCTGAGCCAAAAGTGCCATTCGTGAAATCAAGC
AAGGACCAAGCAAATCTTAGATGATGATCTCGACTGTGATTTTATCTcat
tattgaagtattttttaGACTCATCTTTAAAGTAggtctgaaattatttt
taaagtatCATGGCCTCAGTTATTGCTTCGTCATATTTCATTTTAAGTTT
CCATATTTCATATACTTTATTACATTAATGAAGCATAACTCTGtagattt
aatttaattttaatgcACTAttaattcatcattttttaccCTCCCACAGG
ACATTCGAAACACGGTTGGTAACATCCCTATGGAGTGGTACAAAGACTAT
TTGCACATCGGTTATGATCTCGATGGGAATAAAATCGGTAAAAAAGAACA
AGGCGATCAATTGGATAACTTTCTCACCAAAATGGAAGATCCTGATTATT
GGAGGACAGTTCGTGATAAAGTCAACATGGAAGACATCAAACTGACTGAT
GAAGAGATCGAGATCATTCAAAGGATTGAAGGAGGACAATATGCTGATAA
AGATTTTGATCCTTATGAACCTTACGTTGATCATTTCACCAGTGAAACTA
TGATTCATCCCATCAAAGATAACCCGTCAACTAAGAGGAGTTTCACACCT
TCCATTTGGGAACATAAAAAGGTAATATCAAGTGTTTTGATAGCTCAACT
GTTACATGAACCATTaagaagaaaacaaatattACATCTGAATTATGAAA
CTTGGAGTTCTACAAAAATGAAATAgttgttttctttttgatgaTCAAAA
ATAGGCTACTAATGTCTAATGTATTCAGAACACTGAGGATTTTAATTACG
AAAAATAACGGAAAGTAGATTATCTTAAATAGATTTTCTTCACATTGCAA
ATATTTTCTTGACTAATATTTTCATTGTCAGGTCATGAAAATCGTGAGAG
CGATTCGTAACGGTTGGATAAAACCGAAAGTGAAGTCGGATGGACAACCC
AAATATTATTTGATATGGGGAAAAGATGACAGGGTAAGCTGTAATTGTAT
ATATACTGTAGAGTCTCTCAAAATGTCTTCTTAATAACTCGAACAAAGTC
GTGTTCCCCGTGTGTGTTCGTTCGAGATATAGTGACTCAACTGCATAACG
TGCGTTggaaaaaaagctaaaacacAGGGAAATTCTAGGCTAGATGCTAC
TTTATTTTCTATCGGAATGTTTGGTTTGTTTTCGTTTTATTTACTTGTAT
CGTTGTTAAAACATTTGACTTCCCCAGGTTCCAAATACACAAAAAAATGA
GCCCCTCTCTTTCGTTAGTGTGATTTATTGTACACTATACATTATTGTTT
CGTACAAGAAAATTTATGTTTTCACTTTTCAGCCAAATGATCATCCGATG
AGATGGGCCGCTCCAAAGCTAAAACTTCCTGGTAAAATTAAAGAACATCA
TTGCCTTTAGTGTCATACTTTTGATACGAATGTAGATTATaatttaaata
acattttaatggtcattctgtatatatttttcgaCCTGCTTGGTACAGGT
CTTCGTCAGGTCTAAACAATACAAACGGTTGAAGGCGCTACCTTgacttt
ttttgacgtcaaaaaagtcaatgtagtgtcttctccCTAATGTGCGAGAG
CATTGGCTTCCAAAACCTAGATGTCCCATACTGACCATCGTCTAAATTAA
GACCATGGTCACTATGTGGCGCCGTCTGACGGAATTGGATTTCCAATGCT
TCTCGCACTTTTCTATCAAATTTGTTCTCTTCAGTCTTTAAAGAACATCA
TTTAATGGGGTCacaaaattagagaaattttgtGTCCCTCCTTTCTATAC
TAAAAGCAAGAATACCTTTCATTTTACTATTCTTTCGAAATGTGATATTA
GAAATGTGCTCCacataaaatgacaaaaagtgcgcaaaacaattttcttg
ttttaaagTATAGAATTTGATTTATGCAGGACACGAAGAATCTTATAACC
CTCCACCAGAATATCTTCCCACTGAAGAAGAGGTAACTACTTAAAAAGTA
TTATTTAAGGAGCCTTTCCCGGTCAAGTTAATATAATTTGGACAACATTT
ATTCATTCTCCTTTCAATCTCATATTGCAGAAAGCAGCATGGGAAGCGTT
GGATCCCGAGGATCGGCCACAAAATTATTTGTCACAGAAATTCGATGCTC
TACGGAAAGTTCCCGGATATTCCAATTTCATTCAAGAGCGTTTCGAGCGT
TGTTTGGACTTGTATCTTTGTCCTCGTCAAAGGAAAGTCAGAGTAAGGAT
GAACGTTGTTTATCGAATTGTGGGATGGAAGCCGTCAACTGATTTCCACC
TGtgaaaatattgtatttttggTGATGTAATGGGtcattccattaaattt
ccatacagggggttggACACAtcttggaaatgtgtggatactGCCTGGAA
AATGGCAAGAACGGCAAAAAAcccttggaaaatttcttttcagacTTTGA
AATGAAAGTGGACGAACTTAATCAGTCTTTTAAgccctggaaattttaaa
ataaatttttcaccccctgaaaaaatgaaaaaacactctttgacaccccc
tggaaattctgctCAAATTACCCCCTGAATGTTTGTTCACCCcctctgta
tggatataaaatggaatggccgaatattttgcaaaaagaaattttcgtaG
TTGATTATTTTATCAGTCAAGCACAAACTAATCAACACTTTTCTTCATAG
TTGAACATCAATCCGGAAGACTTGATTCCCAAACTACCAAGACCTAAAGA
CCTTCAACCTTTCCCAACCACTGAGGGAGTAGTAAGTCAATAGCTTATTT
GATTCCCAAACTACCGAGACCTAAAGACCTTCAACCTTTCCCAACCACTG
AGGGAGTAGTAAGTCAATAGCTTATTTTATTTCCAAACTACCGAGACCTA
AAGAACTTCAACCTTTCCCAACCACTGAGGGAGTAGTAAGTCAATAGCTT
ATTTGATTCCCAAACTACCGAGACCTAAAGACCTTCAACCTTTCCCAACC
ACTGAGGGAGTAGTAAGTCAATAGGTTATTTGATTCCCAAACTACCGAGA
CCTAAAGACCTTCAACCTTTCCCAACCACTGAGGGAGTAGTAAGTCAATA
GGTTATTTGATTCCCAAACTACCGAAACCTAAAAACCTTCAACCTTTCCC
AAGCACTGAGGGAGTAGTAAGTCAATAGCTTTTGATTTATGGTTAACTCC
CTCTAATTTGAAcctcttttattcgaatcaTTCTGTAAATCGAACTATCT
catcccctcagctggaaagtgaTACAAAATATACTCTCCGTAATCCGAAT
CTTTGTTCATTtctctttcttcttttagaGGTACAAAGGTCACACAGACG
TCGTGAGATGTATATCAGTCGATCCAACCGGTCAATGGTTAGCTTCAGGT
AAAATGTATTTTGGTGCCAAGGTTGTTAATCCTCATTGAAGAATACATTA
AACATCTTTCCATGCAATGTTTTTAAGGAATGTTATACTTAGTCTTCAAT
AAAAATgttaactattttcaaaagaatggaatctattgtttatatttttt
gggGGATTTTTCATGGGGACACCTATTATGTCGTGAAATCTTAGATATCG
AACGGGTCCTTGTTTTACAcgccttttttcttttttatgtgTATAGTTAG
GCTGTGTTTATATCCAGAAGAATTCAGTTTACATTCAATATTTCACATGG
ACGGGTCTGTAACACATGTTactcaaaaatgttttcaactttgtaaaata
ttaaaaataccgtatcatgctttatttttctgataaactCAATCTCAATT
CTTGTTTTTTCTGTAGGAAGTTCTGACAATACCATACGTTTCTGGGAGGT
GATTACAGGACGTTGTATGAAGACTTTGAACGTTGAGGGAACAGTGAACA
GTTTGGAATGGAATCCACAAGACACTATACCCATTCTTGTAGCTGCCGTG
TAAGTTTAATATTGCATTGAACCCCATTCATACTTAACACCTCAAAAACT
TGAGTGGTGAAAACGCTCGGCAGATTAAAATTATCAGTGCACGAAACTCT
TCCGTCTCCATGAGGTACAAAAAGAAGCTCTTCCGTCtcagaattaaaaa
ttttactaaatttgaagaattgaatTTTACCTAATTTACTGTTTAAAAAA
ATCCGTTACCATCTGAGACAAGAAACTTTGCTTTGACCCCTAAATGATAC
TCTCTTTCAGTGATACAGATATGTTTATAATCAATCCTGGATTGGGTGAT
AAATTGTtatgcaaaaatattgataaCAAAATGAACACAACGAGTGAAGA
TTTCCAACAAAGCGAACTTGCAACGTGGTCAAAATGCAATAAGAAAGACA
ATGAACTTGGTTTCCGGTTAAAGATCTCACACTCGAAGGTGACTTTATTA
TTGTAGTATTAGAGGAGAATTTTTGTTTCTTGATCGTATTGTTCATTGAC
GCAGTTACCCCGAGCAAATATACTATCTTTATCAACAGTTCTTCGTTACG
TTTTAACTCGACGATTAATGCAACCTATTTCTCAATTTCTCAGCCAGTCA
AACAAGTTACTTGGCACGGTAAAGGAGACTACATTGCTGCTGTGATTCCA
GACGGTATGTGATTTACCTGTCAGTACTCAAAATGGTGCATCcttcaata
tttcattttaccAGGTACTCTTTGTTGAAATGACTAAAAATTGTGCTTCT
CTAATCCATAGGTGAAAGCAAGTCAGTGGCCATTCATCAATTATCAAAAG
GAAAATCACAGGTATTTTGTACTTTTGGCCGTGTAATAAATACACTTCTC
GTGCATTAATTTGTATTAATTTTCCTTTTGCTCAAGATAGCCTGATTTTA
ATATTTAGTAACCTAGAAagtgttttaaaaagttttcctacatagtaggg
ggccaagcctggggccccgtgacatcttttctacgacctggccattttta
gtctattccaaaaaacagtatattacaagatatttttgagagggaggacg
cggactagacccgggaaaactttttatgaccaaaatagtgacgccatagg
caaaactgcaagggaaaataaggggtaggaaaatagctgattttcgaaag
tcaaaataaacgaaaatgattggtaccatcagAAAGAACATGAAAacctg
agcaaaaaaaatgtattacaacaactctctgactaaaacacacaaagaaa
tacagccgcttgaagttaaaaaacataccgacgtcagtacgatcaagaca
agatttgacgtcaaatcacagtagagctgacagttagttggtcttaaagc
agtgctgacgagtcctaataaggacgaaatgcatatgctgctctgccacc
caaatctcctgagtgaatatagttggacagaaattcgtatttcttcacat
atataccCATCTAAAGTTTCATTCGACTTCTTATTACCCTAGACTACGTC
GTATCTCCTTTCGTTTGGAGCGTAAAACTGGCCTTTAGCCTGGAACTTTC
TATAGCGTAGACTGTAAACTCAATTGGAGAGTTTTTAACAGGAAAACGGC
CATCATCACTTGATTTCATTTGatcattttactttttctacAGTGTCCAT
TCAAGAAATCTAAAGGACAAATCCAATGCGTCCGATTTCATCCCACAAGA
CCTTTCTTCTTTGTCGCTGTAAGTTTACATATTTgtcaagaaaaaaatga
ctctTAATTCACATTTCCTCTTCAATAAAtactcaaaatatttctttgaa
aatttccagCTAATGTCTTGATTAATAACTTTGGGTAACATCCAGAGGgt
tctttgattatttttctcTAACTACCTTATCGGAATTTTCAGTCCTTTAA
TTGGCATTATTTTATCCCTGCCAAAAGAACAATACGAACAATGCGGAACC
CGTTACACTTCTTATTTACAGACGCAGCGATACATCCGTGTATACAACCT
TCAGAAACAAGAATTAACAAAGAAATTAGTATCAGGAATCAAATGGATTT
CGTGTCTCGATATACATCCTACAGGTAACTTTCAATCCTGTAAAAGCAGG
GCTGAAGTCTTTGATAAGTCAATTTATTCTCTAACTTTGTCAAAACCTCT
GAACCATTAAAAGCACACATTTTGTTAATCTGCTGACTAAATGACATCCA
CGCAGAGgctatttagaaaaaaaagaccTTTTTAAATTTACAAGCATTAG
ATCGAAAGCCATGAAATTTCATGCCATATTACCTTTCCTATGACACCCCA
Ctggaaaataaagcaaaaatttcgtccccggtgggaaaatatccttgaat
ttcagccctactggggaattgactttgatttcagccctactggggaattg
actttgatttcacccTTTCACCCCCACTCgaaatttcatgtttaaaaatt
gcactccaaaaccttggaacaatagaatttctataccCATTGGGATTTCT
actcaataggaatttttatccccactgaggaaaaaaagctccaccggggc
tgtgagatacGCCTACTGTTTCCATCTCATATTTGGTTTGGGAGATATGC
tgcacatttttttttctttttttctattgttgatatttttttgcacaCGG
TACAAGAGACTTAAAtgtctcttctgattggctaattggctaattaaaaa
agaacaacagGGACGATTGGGCCTTTGAAGGCTTAATTTTATGCAATTCA
TGTAAAGGCCTGTTTCCCTTTTATTTTCAGGATGTTGTATCTTCTTAATC
TTTCTTCTTCAACGACAAGTTTTTCGTTTTATTTTCGTTAAGAGTGGGCC
ACATCCCCTTTAAGTATTACTCACCCAAAAGTCTGGAAGTCTCGGCTCAG
TCAACCTACCAGTATTGATTCGAACCATGTTCATGAGGTAAGGTCATTTT
TCTAACTATACACAGTAGTAGCTCTACATAACATAAGATTTTCTATTCGA
TTACAGGCGACAATCTTATCATTGGAGGTTATGATAAACGATTATGCTGG
TTCGACATGGATCTCTCTACTAAACCTTACAAAACTCTAAGGTACCTGtc
ttttcattgttattttttgaACGCAATGACGTTAAGTCTGAATACCCCTC
CAGTTTCTGAAAATGTTCATTTAATCTTATAAACTGTGACTAAtcataat
tgataattttcacCATATGGTAATAAAATCCTGTACTTCCTACAAACGGA
TACTACATTGAGATATTTCTGAATATTTTcatgtaaattttattttcaag
acaTCACAAGCGAGCGATTCGACAAGTGACATATCATAAACAATATCCTC
TCTTCGCCTCTTCATCTGAcgacggcactgtcatcattagCCATGGAAAA
GTATTCAGGTAACATTAGCCTACTTGCTGTTGTATTTTTTTATGATCATC
ACGTATTTTGTGGAATatctttttcatgatttttagaatCCATACTAAAA
GGATTTCACAATGGCCAGAATTTTAGGTCTATGCTTCCTGTTCTAGTTTA
GGGTCGTTATATATTTATATATCACCTGAGATATATGATAGTATGCTGAA
TAAAATTCAGTCAATTCTTTCCTCATTTTTATAGCGATTTGATGCAGAAC
CCTTTGATCGTACCATTGAAAATTTTACGGGGCCATCAAGTCACCAATGA
TCTAGGTAGGTTCCTTAAAGAATTGTAATACATTATACTGTCCAGATTCT
GATACTTATAGTTTAGTTTTAATCAAACAAACCTAATATTTGATATTAAT
ATTAAAGACTTGGGAATAGATTTTCAATGTTACGTAACCTTACAAGTCCT
GTAAGTGAAAGCTCAATACAAGTTTTAACCATTGACTTCCAAACCCGAAG
Ggttagactcgagactcctggatggaaaatgaagccacttgtttcccatc
cagaacgcccacgcgtagtttttacacaagcGCTGGATTTTAAATTAATA
tcgcaagatttaaaaaaatgctgtcttcaaaaacaaagaaatcgctaGAT
Acgatccgtcgtcatgattgcggcgcgttttaggtgcgttctggatggga
aataagtggcttcactttttcttgcctgggaaaggttagagattctactc
tagcccttcgtgCTTTAAACGCAATGGTTTTAACCATGAAAATTGATGGC
ACAAACGTTTCATATGGTCATCACACCatcagaattttgaattttgaaat
gatgTTCTAGAAACTGCCACGAAAATTTAGGGAATGAACTTTTGGGAATT
TATCATAATTACCTGAAAGACGGTTACAtaatatttaaaacatttttctc
attttttcaacGAAATCTGAACAATGATagacaaaattttgaatctGATA
GAAATTTGGACAGAAGCAAAAGTCGGCCTTAAAAAaggagatgccttgga
gtttttacaagatacttcactagttggtcatttaaagtgatagagatgac
gcgttctttagaaaaagtaataagattcttttattacatcttaacgacca
accaaatcaaataagagcttgtaaaaactccagcttgtcccttaAAAAAG
TGGAAATCTGTGGAATtgatacaattttcaaaataaattttcggaGCTTG
AAAAAGGGACTCTGACCAGCTTTATGTACCTGTACCTCAACTAAACTTCT
CAATCATTTTTCAGGCGTTGTTGATTGCCAGTTCCATCCACATCAACCGT
GGGTGTTCTCAGCCGGTGCCGATAAAACCATACGGCTGTTCACTTGAGTG
GCTTTTGTACTTTTTATAGGTTTTTTTTCCGTTGGAAGATATTTTGTATC
TAAATTCAATAAGACATTGTGTATTTTATCTTTTGTCTGTTGCAGAGAAT
TGCTTCATTGTCATAAATCTTGTAATCtttaaatggag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011949XLOC_011949Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021330-exon-sc0000385-1491911889:79443..79651TCONS_00021330-exon-sc0000385-1491911889:79443..79651Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1510915933:79443..79651TCONS_00021330-exon-sc0000385-1510915933:79443..79651Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1575043694:79443..79651TCONS_00021330-exon-sc0000385-1575043694:79443..79651Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1491911889:80779..80952TCONS_00021330-exon-sc0000385-1491911889:80779..80952Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1510915933:80779..80952TCONS_00021330-exon-sc0000385-1510915933:80779..80952Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1575043694:80779..80952TCONS_00021330-exon-sc0000385-1575043694:80779..80952Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1491911889:81238..81429TCONS_00021330-exon-sc0000385-1491911889:81238..81429Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1510915933:81238..81429TCONS_00021330-exon-sc0000385-1510915933:81238..81429Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1575043694:81238..81429TCONS_00021330-exon-sc0000385-1575043694:81238..81429Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1491911889:81892..82263TCONS_00021330-exon-sc0000385-1491911889:81892..82263Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1510915933:81892..82263TCONS_00021330-exon-sc0000385-1510915933:81892..82263Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1575043694:81892..82263TCONS_00021330-exon-sc0000385-1575043694:81892..82263Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1491911889:82524..82625TCONS_00021330-exon-sc0000385-1491911889:82524..82625Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1510915933:82524..82625TCONS_00021330-exon-sc0000385-1510915933:82524..82625Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1575043694:82524..82625TCONS_00021330-exon-sc0000385-1575043694:82524..82625Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1491911889:82975..83023TCONS_00021330-exon-sc0000385-1491911889:82975..83023Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1510915933:82975..83023TCONS_00021330-exon-sc0000385-1510915933:82975..83023Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1575043694:82975..83023TCONS_00021330-exon-sc0000385-1575043694:82975..83023Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1491911889:83572..83624TCONS_00021330-exon-sc0000385-1491911889:83572..83624Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1510915933:83572..83624TCONS_00021330-exon-sc0000385-1510915933:83572..83624Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1575043694:83572..83624TCONS_00021330-exon-sc0000385-1575043694:83572..83624Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1491911889:83723..83884TCONS_00021330-exon-sc0000385-1491911889:83723..83884Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1510915933:83723..83884TCONS_00021330-exon-sc0000385-1510915933:83723..83884Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1575043694:83723..83884TCONS_00021330-exon-sc0000385-1575043694:83723..83884Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1491911889:84343..84423TCONS_00021330-exon-sc0000385-1491911889:84343..84423Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1510915933:84343..84423TCONS_00021330-exon-sc0000385-1510915933:84343..84423Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1575043694:84343..84423TCONS_00021330-exon-sc0000385-1575043694:84343..84423Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1491911889:84971..85040TCONS_00021330-exon-sc0000385-1491911889:84971..85040Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1510915933:84971..85040TCONS_00021330-exon-sc0000385-1510915933:84971..85040Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1575043694:84971..85040TCONS_00021330-exon-sc0000385-1575043694:84971..85040Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1491911889:85459..85591TCONS_00021330-exon-sc0000385-1491911889:85459..85591Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1510915933:85459..85591TCONS_00021330-exon-sc0000385-1510915933:85459..85591Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1575043694:85459..85591TCONS_00021330-exon-sc0000385-1575043694:85459..85591Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1491911889:85853..86030TCONS_00021330-exon-sc0000385-1491911889:85853..86030Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1510915933:85853..86030TCONS_00021330-exon-sc0000385-1510915933:85853..86030Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1575043694:85853..86030TCONS_00021330-exon-sc0000385-1575043694:85853..86030Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1491911889:86186..86246TCONS_00021330-exon-sc0000385-1491911889:86186..86246Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1510915933:86186..86246TCONS_00021330-exon-sc0000385-1510915933:86186..86246Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1575043694:86186..86246TCONS_00021330-exon-sc0000385-1575043694:86186..86246Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1491911889:86354..86403TCONS_00021330-exon-sc0000385-1491911889:86354..86403Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1510915933:86354..86403TCONS_00021330-exon-sc0000385-1510915933:86354..86403Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1575043694:86354..86403TCONS_00021330-exon-sc0000385-1575043694:86354..86403Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1491911889:87236..87310TCONS_00021330-exon-sc0000385-1491911889:87236..87310Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1510915933:87236..87310TCONS_00021330-exon-sc0000385-1510915933:87236..87310Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1575043694:87236..87310TCONS_00021330-exon-sc0000385-1575043694:87236..87310Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1491911889:87564..87666TCONS_00021330-exon-sc0000385-1491911889:87564..87666Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1510915933:87564..87666TCONS_00021330-exon-sc0000385-1510915933:87564..87666Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1575043694:87564..87666TCONS_00021330-exon-sc0000385-1575043694:87564..87666Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1491911889:88599..88683TCONS_00021330-exon-sc0000385-1491911889:88599..88683Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1510915933:88599..88683TCONS_00021330-exon-sc0000385-1510915933:88599..88683Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1575043694:88599..88683TCONS_00021330-exon-sc0000385-1575043694:88599..88683Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1491911889:88893..89000TCONS_00021330-exon-sc0000385-1491911889:88893..89000Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1510915933:88893..89000TCONS_00021330-exon-sc0000385-1510915933:88893..89000Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1575043694:88893..89000TCONS_00021330-exon-sc0000385-1575043694:88893..89000Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1491911889:89227..89297TCONS_00021330-exon-sc0000385-1491911889:89227..89297Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1510915933:89227..89297TCONS_00021330-exon-sc0000385-1510915933:89227..89297Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1575043694:89227..89297TCONS_00021330-exon-sc0000385-1575043694:89227..89297Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1491911889:90307..90530TCONS_00021330-exon-sc0000385-1491911889:90307..90530Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1510915933:90307..90530TCONS_00021330-exon-sc0000385-1510915933:90307..90530Clytia hemisphaericaexon
TCONS_00021330-exon-sc0000385-1575043694:90307..90530TCONS_00021330-exon-sc0000385-1575043694:90307..90530Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000385supercontigsc0000385:79443..90530 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
31.9597	28.4046	14.8472	12.6303	8.09988	6.9385	13.3222	14.161	10.3823	11.2533	9.27613	7.57682	9.27827	9.33228	10.3694	10.8849	14.4892	12.9363	2.43591	2.99255	12.6149	13.0537	17.8129	18.1518	10.7786	12.802	4.71313	3.76695	10.6385	12.4143
Blast
[Close]
BLAST of TCONS_00021330 vs. Swiss-Prot (Human)
Match: BOP1 (Ribosome biogenesis protein BOP1 OS=Homo sapiens GN=BOP1 PE=1 SV=2)

HSP 1 Score: 760.37 bits (1962), Expect = 0.000e+0
Identity = 346/623 (55.54%), Postives = 468/623 (75.12%), Query Frame = 3 
Query:  558 DTSDEEDIRNTVGNIPMEWYKDYLHIGYDLDGNKIGKKEQG-DQLDNFLTKMEDPDYWRTVRDKVNMEDIKLTDXXXXXXXXXXXXXYADKDFDPYEPYVDHFTSETMIHPIKDNPSTKRSFTPSIWEHKKVMKIVRAIRNGWIKPKVKSDGQPKYYLIWGKDDRPND----HPMRWAAPKLKLPGHEESYNPPPEYLPTEEEKAAWEALDPEDRPQNYLSQKFDALRKVPGYSNFIQERFERCLDLYLCPRQRKVRLNINPEDLIPKLPRPKDLQPFPTTEGVRYKGHTDVVRCISVDPTGQWLASGSSDNTIRFWEVITGRCMKTLNVEGTVNSLEWNPQDTIPILVAAVDTDMFIINPGLGDKLLCKNIDNKMNT-TSEDFQQSELATWSKCNKKDNELGFRLKISHSKPVKQVTWHGKGDYIAAVIPDGESKSVAIHQLSKGKSQCPFKKSKGQIQCVRFHPTRPFFFVATQRYIRVYNLQKQELTKKLVSGIKWISCLDIHPTGDNLIIGGYDKRLCWFDMDLSTKPYKTLRHHKRAIRQVTYHKQYPLFASSSDDGTVIISHGKVFSDLMQNPLIVPLKILRGHQVTNDLGVVDCQFHPHQPWVFSAGADKTIRLFT 2408
            D+SDEEDIRNTVGN+P+EWY D+ H+GYDLDG +I K  +  D+LD FL KM+DPDYWRTV+D +   D++LTDE++ +++R++ GQ+ D  F+PYEP VD F+ + MIHP+ + P+ KRSF PS+ E +KV ++V AI+ GWI+P+   D  P +Y +W ++D PN     H M   APKL LPGH ESYNPPPEYL +EEE+ AWE  +P +R  ++L +KF +LR VP Y  FIQERFERCLDLYLCPRQRK+R+N++PEDLIPKLPRP+DLQPFPT + + Y+GH+D+VRC+SV P GQWL SGS D ++R WEV T RC++T+ V G V S+ WNP   + ++ AAV+  + ++NP LGD+L+  + D  ++     +    + A W + ++++ ++G RL+I H KPV QVTWHG+GDY+A V+       V IHQLS+ +SQ PF++S GQ+Q V FHP RPF  VA+QR +R+Y+L +QELTKKL+   KW+S L +HP GDN+I G YD +L WFD+DLSTKPY+ LRHHK+A+R V +H +YPLFAS SDDG+VI+ HG V++DL+QNPL+VP+K+L+GH +T DLGV+D  FHP QPWVFS+GAD T+RLFT
Sbjct:  125 DSSDEEDIRNTVGNVPLEWYDDFPHVGYDLDGRRIYKPLRTRDELDQFLDKMDDPDYWRTVQDPMTGRDLRLTDEQVALVRRLQSGQFGDVGFNPYEPAVDFFSGDVMIHPVTNRPADKRSFIPSLVEKEKVSRMVHAIKMGWIQPRRPRDPTPSFYDLWAQED-PNAVLGRHKMHVPAPKLALPGHAESYNPPPEYLLSEEERLAWEQQEPGERKLSFLPRKFPSLRAVPAYGRFIQERFERCLDLYLCPRQRKMRVNVDPEDLIPKLPRPRDLQPFPTCQALVYRGHSDLVRCLSVSPGGQWLVSGSDDGSLRLWEVATARCVRTVPVGGVVKSVAWNPSPAVCLVAAAVEDSVLLLNPALGDRLVAGSTDQLLSAFVPPEEPPLQPARWLEASEEERQVGLRLRICHGKPVTQVTWHGRGDYLAVVLATQGHTQVLIHQLSRRRSQSPFRRSHGQVQRVAFHPARPFLLVASQRSVRLYHLLRQELTKKLMPNCKWVSSLAVHPAGDNVICGSYDSKLVWFDLDLSTKPYRMLRHHKKALRAVAFHPRYPLFASGSDDGSVIVCHGMVYNDLLQNPLLVPVKVLKGHVLTRDLGVLDVIFHPTQPWVFSSGADGTVRLFT 746
The following BLAST results are available for this feature:
BLAST of TCONS_00021330 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BOP10.000e+055.54Ribosome biogenesis protein BOP1 OS=Homo sapiens G... [more]
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