|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021276 ID=TCONS_00021276|Name=TCONS_00021276|organism=Clytia hemisphaerica|type=transcript|length=1644bp
AAAGCAAACAGAGGTTTCTATAGATATTGTAATCGATAGAATTCAACCAG
CATCATGATACCCGCAGTTGTCTCGATTGCCTTATTCATCGTTCTCACAA
TCACCTTCTCATTCAAGACTAAGCGAGGCAAATTTTTGCCACCTGGACCG
AGTGGATTGCCAATTATTGGTTATCTTCACAAACTTGGATCAAAGCCATT
GCATCTTTTGTTAGCTGACCTTGGTGAAACATACGGAGATATCTTTTCTT
TGCAACTTGGATCAAGATTGACCGTCATCCTCAACAGTAAAGATGCTGTC
TATGAAACTTTCGTCAAGAAAGCAAAGATCTTTGCAGGACGACCAGACTT
AGCAACATTCACGACCACCCGGCATGGCGCAACAGGAATCAGTATGTGTG
ATTATACTGACGAATACAAACGAAACAGACAGATGACTTTGAAAGCTATG
CATTCATTGTATGCTGATAAAGAACGATTCAATGAAATCTTGCAACATGA
AGCAACAAAGATGATCAATCTGTTCAACGAGAAGTCATTGACAAATGAAC
GATTTGATCCAGCAAATGAATTCCATAAAGTCGTCCCCAGTATCATGGTC
CACGTCATGTATGGTAAGAATTCACCCTACGATGATAAAGATGTCATGTC
ATTGGTCAATGTGAACAAAAGATGGTTCCAAAGTGCTGAGGGAAGCAATC
CAGCTGATTTCCTGAAATTCTTGGAGCGGTTCCCCAACAAGAGGCTTGAC
GCCATCCAAGAGAGTTGTATGATGTTTTACAAGTTCGCTTTTCAGAAGAT
GGAAGAGTATGAGCAACAAGAATGTAGTGGTTTGTATGGAACATATATCC
AGTTGTATAAAGAGAAAACAGGCGTCACCGAACTGACCAATAAAGACAGA
TTTGAATTAGGGCGTTGTGTGAATGATATGTTAGGCGGAGGTTTCGATAC
TTTAGCGGCCACGCTAACTTGGGCGTTATTGTATTTGTGGAAACGCCCTG
AAGTGATTGCGAAATGTCGAGAGGAGATCGAACGAGTTCTGAGCGACGAA
GATATGATTGGTCTGCATCACGAAAAGCNAGATCGAACGTGTTCTGAGCG
ACGAAGATATGATTGGTCTGCATCACGAAAAGCAATTATCCTACTGTATG
GCTACAACACATGAGCTACTCCGAGTTTGCTCTGTGGCGCCGCTCGGTTT
ACCCCGAAAAACAATGGAAGAAGTGAAAATTGGCGAATTTGTCATCCCTA
AAGACACAATGGTTATGCCAAACTTGTGGTCCATCAATAACCAAACTGAA
TTATGGAAAAATGCTGAGCAATTCTCACCAGAAAATTTTCTTGATGAGGA
AGGCCATTTGGAATTGAAGAGCATTCGAAACATCGCTACTTTCTCCGTCG
GGGTTCGAAGGTGTCCTGGTGAGAAATTCGCAACACTTCAATTATTCGTC
TTGTTGACAAACTTTATaaaaaacttcaattttgaTGTTTGTAAGCCGCC
ACAAGATATGATACCACAGGGAGGTTTGACTCTTCAAGCAAAACCTTTTA
TGATCAAAGTCAGCAAAGTTGACCAATAAAGCATTACTcacaaactttca
tttttcaaaacttttgtaaaaaaggTATTTTCAATCTCTTACTT Run BLAST on NCBI protein sequence of TCONS_00021276-protein >TCONS_00021276-protein ID=TCONS_00021276-protein|Name=TCONS_00021276-protein|organism=Clytia hemisphaerica|type=polypeptide|length=369bp
MIPAVVSIALFIVLTITFSFKTKRGKFLPPGPSGLPIIGYLHKLGSKPLH
LLLADLGETYGDIFSLQLGSRLTVILNSKDAVYETFVKKAKIFAGRPDLA
TFTTTRHGATGISMCDYTDEYKRNRQMTLKAMHSLYADKERFNEILQHEA
TKMINLFNEKSLTNERFDPANEFHKVVPSIMVHVMYGKNSPYDDKDVMSL
VNVNKRWFQSAEGSNPADFLKFLERFPNKRLDAIQESCMMFYKFAFQKME
EYEQQECSGLYGTYIQLYKEKTGVTELTNKDRFELGRCVNDMLGGGFDTL
AATLTWALLYLWKRPEVIAKCREEIERVLSDEDMIGLHHEKXDRTCSERR
RYDWSASRKAIILLYGYNT Run BLAST on NCBI transcript from alignment at sc0000380:228751..231374- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021276 ID=TCONS_00021276|Name=TCONS_00021276|organism=Clytia hemisphaerica|type=transcript|length=2624bp|location=Sequence derived from alignment at sc0000380:228751..231374- (Clytia hemisphaerica)
AAAGCAAACAGAGGTTTCTATAGATATTGTAATCGGTAAGTTGATCGTGG
TCAATCTATATCTATTTTTTTTGTAAATGGGAGTGTCGAGAACCCACACA
CCCGCCTTTCAAAAGGGCGGCGATATCATCCAGGAAAATTGCGACAAGGG
AAAACGTCATTTAAAAGTTCAAAAAGAAAAATTTGGCAACATTCTTTTTG
ACATTTGATTACGTGTTTATAAGCAATCGTTCGCAGCGCGGTAGAGGATG
TTTTGCATGCTTTGTTGGCAACCTGGTGAGGTCTTGTTGTGCGTGACTGA
GTTTTCAATCGATTCCAGACCCCCTGTACCGTTAACCACGTATTATAAAA
AGGAGGAGGTTTCAAAATCTAATTCAGACCCACACTTCATAATGTACGGT
TTCTCATATCTCGCTTTATGATCTGATTGAGGAATTTTTGAAAGAGTAAT
AGGTGAGACGGCTCCTCTGCAAAGCACTAGATAAGAAACCTGATCACATC
AAGTATTTTTGCAAAAGGCTGGGGACAAGGTGAGGATAAATACTTAGCGA
GCGATTTGAAATCATTCTTTTTGACTGGTCTTACTTTTCGGAAAATCAAC
ATCAATCAATAAGTAACGAATTTTTCTAATTTCTTTATTCTAGATAGAAT
TCAACCAGCATCATGATACCCGCAGTTGTCTCGATTGCCTTATTCATCGT
TCTCACAATCACCTTCTCATTCAAGACTAAGCGAGGCAAATTTTTGCCAC
CTGGACCGAGTGGATTGCCAATTATTGGTGAGTTGGAATGTCTTTCTCGA
TTGATCATTTTAAAATGCAAAAATCTTTATCCAAAGTGCCTTCTAACTGA
TAAGCAATATACTGATATCGCTAATTAACGGGCAGATTGCCAAAAAAATG
TAATTGAGATAAAAGCAAAGTATAACTGAAATAACACTTTTCATTTGACT
TCTGATACAAAGTGAAAAAATTCAGTATCAGTTTATCTCGACAAGTTTTA
TTATTAGGGAGTAAGAGGAAAACACCATATTTGACATTCCGTGCAAAGAG
CGTACTGTGTGCTATCGACAAACTCTAAGAGCTTTTATTTTTACTTTTAA
TCAACTGTGTCTGAATGATAATTGAAAATTCTTATCATTTCTCCCATAGG
TTATCTTCACAAACTTGGATCAAAGCCATTGCATCTTTTGTTAGCTGACC
TTGGTGAAACATACGGAGATATCTTTTCTTTGCAACTTGGATCAAGATTG
ACCGTCATCCTCAACAGTAAAGATGCTGTCTATGAAACTTTCGTCAAGAA
AGCAAAGATCTTTGCAGGACGACCAGACTTAGCAACATTCACGACCACCC
GGCATGGCGCAACAGGAATCAGTATGTGTGATTATACTGACGAATACAAA
CGAAACAGACAGATGACTTTGAAAGCTATGCATTCATTGTATGCTGATAA
AGAACGATTCAATGAAATCTTGCAACATGAAGCAACAAAGATGATCAATC
TGTTCAACGAGAAGTCATTGACAAATGAACGATTTGATCCAGCAAATGAA
TTCCATAAAGTCGTCCCCAGTATCATGGTCCACGTCATGTATGGTAAGAA
TTCACCCTACGATGATAAAGATGTCATGTCATTGGTCAATGTGAACAAAA
GATGGTTCCAAAGTGCTGAGGGAAGCAATCCAGCTGATTTCCTGAAATTC
TTGGAGCGGTTCCCCAACAAGAGGCTTGACGCCATCCAAGAGAGTTGTAT
GATGTTTTACAAGTTCGCTTTTCAGAAGATGGAAGAGTATGAGCAACAAG
AATGTAGTGGTTTGTATGGAACATATATCCAGTTGTATAAAGAGAAAACA
GGCGTCACCGAACTGACCAATAAAGACAGATTTGAATTAGGGCGTTGTGT
GAATGATATGTTAGGCGGAGGTTTCGATACTTTAGCGGCCACGCTAACTT
GGGCGTTATTGTATTTGTGGAAACGCCCTGAAGTGATTGCGAAATGTCGA
GAGGAGATCGAACGAGTTCTGAGCGACGAAGATATGATTGGTCTGCATCA
CGAAAAGCNAGATCGAACGTGTTCTGAGCGACGAAGATATGATTGGTCTG
CATCACGAAAAGCAATTATCCTACTGTATGGCTACAACACATGAGCTACT
CCGAGTTTGCTCTGTGGCGCCGCTCGGTTTACCCCGAAAAACAATGGAAG
AAGTGAAAATTGGCGAATTTGTCATCCCTAAAGACACAATGGTTATGCCA
AACTTGTGGTCCATCAATAACCAAACTGAATTATGGAAAAATGCTGAGCA
ATTCTCACCAGAAAATTTTCTTGATGAGGAAGGCCATTTGGAATTGAAGA
GCATTCGAAACATCGCTACTTTCTCCGTCGGGGTTCGAAGGTGTCCTGGT
GAGAAATTCGCAACACTTCAATTATTCGTCTTGTTGACAAACTTTATAAA
AAACTTCAATTTTGATGTTTGTAAGCCGCCACAAGATATGATACCACAGG
GAGGTTTGACTCTTCAAGCAAAACCTTTTATGATCAAAGTCAGCAAAGTT
GACCAATAAAGCATTACTCACAAACTTTCATTTTTCAAAACTTTTGTAAA
AAAGGTATTTTCAATCTCTTACTT Coding sequence (CDS) from alignment at sc0000380:228751..231374- >TCONS_00021276 ID=TCONS_00021276|Name=TCONS_00021276|organism=Clytia hemisphaerica|type=CDS|length=2220bp|location=Sequence derived from alignment at sc0000380:228751..231374- (Clytia hemisphaerica)
GTTATCTTCACAAACTTGGATCAAAGCCATTGCATCTTTTGTTAGCTGAC
CTTGGTGAAACATACGGAGATATCTTTTCTTTGCAACTTGGATCAAGATT
GACCGTCATCCTCAACAGTAAAGATGCTGTCTATGAAACTTTCGTCAAGA
AAGCAAAGATCTTTGCAGGACGACCAGACTTAGCAACATTCACGACCACC
CGGCATGGCGCAACAGGAATCAGTATGTGTGATTATACTGACGAATACAA
ACGAAACAGACAGATGACTTTGAAAGCTATGCATTCATTGTATGCTGATA
AAGAACGATTCAATGAAATCTTGCAACATGAAGCAACAAAGATGATCAAT
CTGTTCAACGAGAAGTCATTGACAAATGAACGATTTGATCCAGCAAATGA
ATTCCATAAAGTCGTCCCCAGTATCATGGTCCACGTCATGTATGGTAAGA
ATTCACCCTACGATGATAAAGATGTCATGTCATTGGTCAATGTGAACAAA
AGATGGTTCCAAAGTGCTGAGGGAAGCAATCCAGCTGATTTCCTGAAATT
CTTGGAGCGGTTCCCCAACAAGAGGCTTGACGCCATCCAAGAGAGTTGTA
TGATGTTTTACAAGTTCGCTTTTCAGAAGATGGAAGAGTATGAGCAACAA
GAATGTAGTGGTTTGTATGGAACATATATCCAGTTGTATAAAGAGAAAAC
AGGCGTCACCGAACTGACCAATAAAGACAGATTTGAATTAGGGCGTTGTG
TGAATGATATGTTAGGCGGAGGTTTCGATACTTTAGCGGCCACGCTAACT
TGGGCGTTATTGTATTTGTGGAAACGCCCTGAAGTGATTGCGAAATGTCG
AGAGGAGATCGAACGAGTTCTGAGCGACGAAGATATGATTGGTCTGCATC
ACGAAAAGCNAGATCGAACGTGTTCTGAGCGACGAAGATATGATTGGTCT
GCATCACGAAAAGCAATTATCCTACTGTATGGCTACAACACATGAATGAT
ACCCGCAGTTGTCTCGATTGCCTTATTCATCGTTCTCACAATCACCTTCT
CATTCAAGACTAAGCGAGGCAAATTTTTGCCACCTGGACCGAGTGGATTG
CCAATTATTGGTTATCTTCACAAACTTGGATCAAAGCCATTGCATCTTTT
GTTAGCTGACCTTGGTGAAACATACGGAGATATCTTTTCTTTGCAACTTG
GATCAAGATTGACCGTCATCCTCAACAGTAAAGATGCTGTCTATGAAACT
TTCGTCAAGAAAGCAAAGATCTTTGCAGGACGACCAGACTTAGCAACATT
CACGACCACCCGGCATGGCGCAACAGGAATCAGTATGTGTGATTATACTG
ACGAATACAAACGAAACAGACAGATGACTTTGAAAGCTATGCATTCATTG
TATGCTGATAAAGAACGATTCAATGAAATCTTGCAACATGAAGCAACAAA
GATGATCAATCTGTTCAACGAGAAGTCATTGACAAATGAACGATTTGATC
CAGCAAATGAATTCCATAAAGTCGTCCCCAGTATCATGGTCCACGTCATG
TATGGTAAGAATTCACCCTACGATGATAAAGATGTCATGTCATTGGTCAA
TGTGAACAAAAGATGGTTCCAAAGTGCTGAGGGAAGCAATCCAGCTGATT
TCCTGAAATTCTTGGAGCGGTTCCCCAACAAGAGGCTTGACGCCATCCAA
GAGAGTTGTATGATGTTTTACAAGTTCGCTTTTCAGAAGATGGAAGAGTA
TGAGCAACAAGAATGTAGTGGTTTGTATGGAACATATATCCAGTTGTATA
AAGAGAAAACAGGCGTCACCGAACTGACCAATAAAGACAGATTTGAATTA
GGGCGTTGTGTGAATGATATGTTAGGCGGAGGTTTCGATACTTTAGCGGC
CACGCTAACTTGGGCGTTATTGTATTTGTGGAAACGCCCTGAAGTGATTG
CGAAATGTCGAGAGGAGATCGAACGAGTTCTGAGCGACGAAGATATGATT
GGTCTGCATCACGAAAAGCNAGATCGAACGTGTTCTGAGCGACGAAGATA
TGATTGGTCTGCATCACGAAAAGCAATTATCCTACTGTATGGCTACAACA
CATGAATGATACCCGCAGTTGTCTCGATTGCCTTATTCATCGTTCTCACA
ATCACCTTCTCATTCAAGACTAAGCGAGGCAAATTTTTGCCACCTGGACC
GAGTGGATTGCCAATTATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021276-exon-sc0000380-1575043694:231340..231374 | TCONS_00021276-exon-sc0000380-1575043694:231340..231374 | Clytia hemisphaerica | exon |
| TCONS_00021276-exon-sc0000380-1575043694:230598..230731 | TCONS_00021276-exon-sc0000380-1575043694:230598..230731 | Clytia hemisphaerica | exon |
| TCONS_00021276-exon-sc0000380-1575043694:228751..230225 | TCONS_00021276-exon-sc0000380-1575043694:228751..230225 | Clytia hemisphaerica | exon |
| TCONS_00021276-exon-sc0000380-1510915933:231340..231374 | TCONS_00021276-exon-sc0000380-1510915933:231340..231374 | Clytia hemisphaerica | exon |
| TCONS_00021276-exon-sc0000380-1510915933:230598..230731 | TCONS_00021276-exon-sc0000380-1510915933:230598..230731 | Clytia hemisphaerica | exon |
| TCONS_00021276-exon-sc0000380-1510915933:228751..230225 | TCONS_00021276-exon-sc0000380-1510915933:228751..230225 | Clytia hemisphaerica | exon |
| TCONS_00021276-exon-sc0000380-1491911889:231340..231374 | TCONS_00021276-exon-sc0000380-1491911889:231340..231374 | Clytia hemisphaerica | exon |
| TCONS_00021276-exon-sc0000380-1491911889:230598..230731 | TCONS_00021276-exon-sc0000380-1491911889:230598..230731 | Clytia hemisphaerica | exon |
| TCONS_00021276-exon-sc0000380-1491911889:228751..230225 | TCONS_00021276-exon-sc0000380-1491911889:228751..230225 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000380 | supercontig | sc0000380:228751..231374 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005506 | iron ion binding |
| GO:0020037 | heme binding |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0020037 |
heme binding |
| molecular_function |
GO:0005506 |
iron ion binding |
| molecular_function |
GO:0016705 |
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Blast
BLAST of TCONS_00021276 vs. Swiss-Prot (Human)
Match: CP1A1 (Cytochrome P450 1A1 OS=Homo sapiens GN=CYP1A1 PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 8.363e-36 Identity = 80/306 (26.14%), Postives = 147/306 (48.04%), Query Frame = 1
Query: 172 YLHKLGSKPLHLLLADLGETYGDIFSLQLGSRLTVILNSKDAVYETFVKKAKIFAGRPDLATFTTTRHGATGISMCDYTDEYKRNRQMTLKAMHSLYADKER-------FNEILQHEATKMINLFNEKSLTNERFDPANEFHKVVPSIMVHVMYGKNSPYDDKDVMSLVNVNKRWFQSAEGSNPADFLKFLERFPNKRLDAIQESCMMFYKFAFQKM-----EEYEQQECSGLYGTYIQLYKEK----TGVTELTNKDRFELGRCVNDMLGGGFDXXXXXXXXXXXXXXKRPEVIAKCREEIERVL 1041
++ LG P HL L+ + + YGD+ +++GS V+L+ D + + V++ F GRPDL TFT +G + D + R++ + S + E + EA +I+ E F+P V +++ + +G+ ++ ++++SLVN+N + + NPADF+ L PN L+A ++ FY F QKM + +E+ + + I+ +EK +L+++ + V D+ G GFDT+ ++W+L+YL P V K +EE++ V+
Sbjct: 51 HMLTLGKNP-HLALSRMSQQYGDVLQIRIGSTPVVVLSGLDTIRQALVRQGDDFKGRPDLYTFTLISNGQSMSFSPDSGPVWAARRRLAQNGLKSFSIASDPASSTSCYLEEHVSKEAEVLISTLQELMAGPGHFNPYRYVVVSVTNVICAICFGRRYDHNHQELLSLVNLNNNFGEVVGSGNPADFIPILRYLPNPSLNAFKDLNEKFYSF-MQKMVKEHYKTFEKGHIRDITDSLIEHCQEKQLDENANVQLSDEKIINI---VLDLFGAGFDTVTTAISWSLMYLVMNPRVQRKIQEELDTVI 351 HSP 2 Score: 79.337 bits (194), Expect = 8.363e-36 Identity = 45/141 (31.91%), Postives = 64/141 (45.39%), Query Frame = 2
Query: 1118 LHHEKQLSYCMATTHELLRVCSVAPLGLPRKTMEEVKIGEFVIPKDTMVMPNLWSINNQTELWKNAEQFSPENFLDEEGHLELKSIRNIATFSVGVRRCPGEKFATLQLFVLLTNFIKNFNFDV-CKPPQDMIPQGGLTLQ 1537
L L Y A E R S P +P T + + F IPK V N W IN+ +LW N +F PE FL +G ++ + F +G R+C GE A ++F+ L ++ F V DM P GLT++
Sbjct: 359 LSDRSHLPYMEAFILETFRHSSFVPFTIPHSTTRDTSLKGFYIPKGRCVFVNQWQINHDQKLWVNPSEFLPERFLTPDGAIDKVLSEKVIIFGMGKRKCIGETIARWEVFLFLAILLQRVEFSVPLGVKVDMTPIYGLTMK 499
The following BLAST results are available for this feature:
|
