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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021273 ID=TCONS_00021273|Name=TCONS_00021273|organism=Clytia hemisphaerica|type=transcript|length=1833bp
aATTAATTTAGAAACTGTACATTTGAACAATGCGTAGGAGGCTGGGCGTA
AAACGGAAGAACCCCAAGGAAGGAGGGTGTACTATGAACCAGTATAAAAG
CGAGCAAAATACGCAGGTGTTCAGTATAAAATAACAGTAACAGCTTCCGA
ATGCAAGCTTAAAAGAGCGGATTTTCTAACGGTAATTGCAAGCTTAGCGA
CAAAATTTTTACAGAGCAGACAAGATGATATCAGTCGCTATTATGTTTTT
ATTGCTTGGCCTCGTTTTGAAGTATGTTGCTGTGGGGGATCAGAAGAAGC
CAAGGAAATTACCTTCTCCAACGGCCTTGCCTATCATTGGTCATTTGCAT
TTGATTGGTTCAAAATCACTTCATGTCGTCTTGGAATCAATGTCTAACAT
TTTCGGCAAAGTTTATTCCCTGAAGTTGGGAGCCCACCATATTACAGTGC
TGTGCAGTCAGAAAGCTATGAAGGAAGCTTTCGTTAAAAACGCAAAGAAG
TTCAGCGGAAGACCGGACCTTCCGACATTTTCATACACAAGATACGGGCG
TACCGGAATCTCTTTGTGCGACCATAGTCCATTATATGTTCAAAATCGGA
AGAGAGCTGTTCAAAGCTTGCACAAGTTTTTGATGAACGAGAAGAATATG
ATTGGTATTTTTCAAAAGGAGGCTTCAAAGATGGTAGCTCTGTTTAATCA
ATATGTTTCAGAAGGGAAGACGTTTAACCCTTCCCATGACTTTGAGCGGA
TTATTCCCAGCATGTTTCTCTCTATCATGTATGGAATAGATTTACCTTAC
CTGAGTACAGATCTTAAAGAAGTATCGCGCGTTTACAGAGATTGGTTTGA
GGTAGCCGAAGCGGATAACCCAGCTGATTTCTTCCCAGTacttcaaaaat
ttccaaacaaaagACTATCTGTGATTTCCAACTGCGGAAAAGAGTTCGAA
CGCTTCAACATGGATATGCTTCGAAAGGAGCTCCAAAAACCGTCCGATGA
AAACAACAATGGCGTTAACGCAGCTCCGACTACCATTTTGGAAAACCTGT
TGAAGAACGAGACAGCTGAATCACTTGAGAGCGAGGACACGTGTAAAGAA
CTTGCAAAGCTTGTTTCAGATATGATTGGTGCTGGTTTTGATACTATTCC
CTCAACCTTGAGTTGGGCGTTTATTTACTTATCCAACAATCCTAACATTG
TAAAGAAGTGCAGAGAGGAGCTAGATGGTTTATCAACAGACACGAACAAT
TTCAATTATACCAATAAATCGAAGACTCCTTATTTCATGGCAACCATTTA
TGAGATCCTCCGTATGTCATGTGTGGCCCCAACAGGCGTCCTCCACAAAT
CAAACGAAGAAGCTCTGATACAAGGTTATGTTATCCCTAAAAATACAATC
GTGATTGCAAATCTACATCAAATGAATTTCGACGAATCTACATGGTTGAA
ACCTAACGAATTAAGACCCGAAAGGTTCCTGAATGATTCAAATGAACTTG
ACTCTAAGCTGTGTAACGAAATTGCCACATTTTCCGTGGGCACGCGCAGG
TGTCCTGGCGACAAACTAGCAGTTGCAATGATGTACGCCATTTTGGGTAC
CTTTATTGCGAAGTATGATATTAATATGGTGCAATCACCAATCGACATGC
AACCTTTACGTGGCATGACTTCAAAAccgaaagattttcttttgcaGTTG
ACACATGTCAATTAAGCAATTACGAGTACGGACCTGATGTACTAGCGTTT
GTAAATAAGTATTTTAGCATTTGTAACTTGTAATTCATTCAATTCAATAG
ACAATTCTACGTGGAAAGGTAGAGATTTTCTCG Run BLAST on NCBI protein sequence of TCONS_00021273-protein >TCONS_00021273-protein ID=TCONS_00021273-protein|Name=TCONS_00021273-protein|organism=Clytia hemisphaerica|type=polypeptide|length=496bp
MISVAIMFLLLGLVLKYVAVGDQKKPRKLPSPTALPIIGHLHLIGSKSLH
VVLESMSNIFGKVYSLKLGAHHITVLCSQKAMKEAFVKNAKKFSGRPDLP
TFSYTRYGRTGISLCDHSPLYVQNRKRAVQSLHKFLMNEKNMIGIFQKEA
SKMVALFNQYVSEGKTFNPSHDFERIIPSMFLSIMYGIDLPYLSTDLKEV
SRVYRDWFEVAEADNPADFFPVLQKFPNKRLSVISNCGKEFERFNMDMLR
KELQKPSDENNNGVNAAPTTILENLLKNETAESLESEDTCKELAKLVSDM
IGAGFDTIPSTLSWAFIYLSNNPNIVKKCREELDGLSTDTNNFNYTNKSK
TPYFMATIYEILRMSCVAPTGVLHKSNEEALIQGYVIPKNTIVIANLHQM
NFDESTWLKPNELRPERFLNDSNELDSKLCNEIATFSVGTRRCPGDKLAV
AMMYAILGTFIAKYDINMVQSPIDMQPLRGMTSKPKDFLLQLTHVN Run BLAST on NCBI transcript from alignment at sc0000380:203848..206084- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021273 ID=TCONS_00021273|Name=TCONS_00021273|organism=Clytia hemisphaerica|type=transcript|length=2237bp|location=Sequence derived from alignment at sc0000380:203848..206084- (Clytia hemisphaerica)
AATTAATTTAGAAACTGTACATTTGAACAATGCGTAGGAGGCTGGGCGTA
AAACGGAAGAACCCCAAGGAAGGAGGGTGTACTATGAACCAGTATAAAAG
CGAGCAAAATACGCAGGTGTTCAGTATAAAATAACAGTAACAGCTTCCGA
ATGCAAGCTTAAAAGAGCGGATTTTCTAACGGTAATTGCAAGCTTAGCGA
CAAAATTTTTACAGAGCAGACAAGATGATATCAGTCGCTATTATGTTTTT
ATTGCTTGGCCTCGTTTTGAAGTATGTTGCTGTGGGGGATCAGAAGAAGC
CAAGGAAATTACCTTCTCCAACGGCCTTGCCTATCATTGGTAAGCACTCA
CTTTTGAGATTTTTACATCTTTTTGAAAAATGTGAAGATTTTCCACTTTT
TTTTTCAAATCCGAAACTTCAAATTGTTATAGAAAGCTTGTACCTTGATA
GTAAGACAATGATTTTAATACCATTCGAAAGGTTTCTTTTATTCCCCTTT
TCAAACATTATTTGTTTTTTATGCCCTTTTAAATCAAGTGGTCATGAGCT
ATATGCTCAAGTCCTGGGACTCGGTATATTGGCGTTTGAACGTTTAATAC
GTTAGTTTGGTTGAAAGGGTTTAACACTGATCTTGCGAGACAAATAATTT
TGCTCAAGCTGTTGATATTTTTTGATTGAGTAACCCTGGTTGAGCTGTGA
AAATTATATTCATTGTTTTTAAGTTTCCGTTAAAATTTTTCAGGTCATTT
GCATTTGATTGGTTCAAAATCACTTCATGTCGTCTTGGAATCAATGTCTA
ACATTTTCGGCAAAGTTTATTCCCTGAAGTTGGGAGCCCACCATATTACA
GTGCTGTGCAGTCAGAAAGCTATGAAGGAAGCTTTCGTTAAAAACGCAAA
GAAGTTCAGCGGAAGACCGGACCTTCCGACATTTTCATACACAAGATACG
GGCGTACCGGAATCTCTTTGTGCGACCATAGTCCATTATATGTTCAAAAT
CGGAAGAGAGCTGTTCAAAGCTTGCACAAGTTTTTGATGAACGAGAAGAA
TATGATTGGTATTTTTCAAAAGGAGGCTTCAAAGATGGTAGCTCTGTTTA
ATCAATATGTTTCAGAAGGGAAGACGTTTAACCCTTCCCATGACTTTGAG
CGGATTATTCCCAGCATGTTTCTCTCTATCATGTATGGAATAGATTTACC
TTACCTGAGTACAGATCTTAAAGAAGTATCGCGCGTTTACAGAGATTGGT
TTGAGGTAGCCGAAGCGGATAACCCAGCTGATTTCTTCCCAGTACTTCAA
AAATTTCCAAACAAAAGACTATCTGTGATTTCCAACTGCGGAAAAGAGTT
CGAACGCTTCAACATGGATATGCTTCGAAAGGAGCTCCAAAAACCGTCCG
ATGAAAACAACAATGGCGTTAACGCAGCTCCGACTACCATTTTGGAAAAC
CTGTTGAAGAACGAGACAGCTGAATCACTTGAGAGCGAGGACACGTGTAA
AGAACTTGCAAAGCTTGTTTCAGATATGATTGGTGCTGGTTTTGATACTA
TTCCCTCAACCTTGAGTTGGGCGTTTATTTACTTATCCAACAATCCTAAC
ATTGTAAAGAAGTGCAGAGAGGAGCTAGATGGTTTATCAACAGACACGAA
CAATTTCAATTATACCAATAAATCGAAGACTCCTTATTTCATGGCAACCA
TTTATGAGATCCTCCGTATGTCATGTGTGGCCCCAACAGGCGTCCTCCAC
AAATCAAACGAAGAAGCTCTGATACAAGGTTATGTTATCCCTAAAAATAC
AATCGTGATTGCAAATCTACATCAAATGAATTTCGACGAATCTACATGGT
TGAAACCTAACGAATTAAGACCCGAAAGGTTCCTGAATGATTCAAATGAA
CTTGACTCTAAGCTGTGTAACGAAATTGCCACATTTTCCGTGGGCACGCG
CAGGTGTCCTGGCGACAAACTAGCAGTTGCAATGATGTACGCCATTTTGG
GTACCTTTATTGCGAAGTATGATATTAATATGGTGCAATCACCAATCGAC
ATGCAACCTTTACGTGGCATGACTTCAAAACCGAAAGATTTTCTTTTGCA
GTTGACACATGTCAATTAAGCAATTACGAGTACGGACCTGATGTACTAGC
GTTTGTAAATAAGTATTTTAGCATTTGTAACTTGTAATTCATTCAATTCA
ATAGACAATTCTACGTGGAAAGGTAGAGATTTTCTCG Coding sequence (CDS) from alignment at sc0000380:203848..206084- >TCONS_00021273 ID=TCONS_00021273|Name=TCONS_00021273|organism=Clytia hemisphaerica|type=CDS|length=2982bp|location=Sequence derived from alignment at sc0000380:203848..206084- (Clytia hemisphaerica)
GTCATTTGCATTTGATTGGTTCAAAATCACTTCATGTCGTCTTGGAATCA
ATGTCTAACATTTTCGGCAAAGTTTATTCCCTGAAGTTGGGAGCCCACCA
TATTACAGTGCTGTGCAGTCAGAAAGCTATGAAGGAAGCTTTCGTTAAAA
ACGCAAAGAAGTTCAGCGGAAGACCGGACCTTCCGACATTTTCATACACA
AGATACGGGCGTACCGGAATCTCTTTGTGCGACCATAGTCCATTATATGT
TCAAAATCGGAAGAGAGCTGTTCAAAGCTTGCACAAGTTTTTGATGAACG
AGAAGAATATGATTGGTATTTTTCAAAAGGAGGCTTCAAAGATGGTAGCT
CTGTTTAATCAATATGTTTCAGAAGGGAAGACGTTTAACCCTTCCCATGA
CTTTGAGCGGATTATTCCCAGCATGTTTCTCTCTATCATGTATGGAATAG
ATTTACCTTACCTGAGTACAGATCTTAAAGAAGTATCGCGCGTTTACAGA
GATTGGTTTGAGGTAGCCGAAGCGGATAACCCAGCTGATTTCTTCCCAGT
ACTTCAAAAATTTCCAAACAAAAGACTATCTGTGATTTCCAACTGCGGAA
AAGAGTTCGAACGCTTCAACATGGATATGCTTCGAAAGGAGCTCCAAAAA
CCGTCCGATGAAAACAACAATGGCGTTAACGCAGCTCCGACTACCATTTT
GGAAAACCTGTTGAAGAACGAGACAGCTGAATCACTTGAGAGCGAGGACA
CGTGTAAAGAACTTGCAAAGCTTGTTTCAGATATGATTGGTGCTGGTTTT
GATACTATTCCCTCAACCTTGAGTTGGGCGTTTATTTACTTATCCAACAA
TCCTAACATTGTAAAGAAGTGCAGAGAGGAGCTAGATGGTTTATCAACAG
ACACGAACAATTTCAATTATACCAATAAATCGAAGACTCCTTATTTCATG
GCAACCATTTATGAGATCCTCCGTATGTCATGTGTGGCCCCAACAGGCGT
CCTCCACAAATCAAACGAAGAAGCTCTGATACAAGGTTATGTTATCCCTA
AAAATACAATCGTGATTGCAAATCTACATCAAATGAATTTCGACGAATCT
ACATGGTTGAAACCTAACGAATTAAGACCCGAAAGGTTCCTGAATGATTC
AAATGAACTTGACTCTAAGCTGTGTAACGAAATTGCCACATTTTCCGTGG
GCACGCGCAGGTGTCCTGGCGACAAACTAGCAGTTGCAATGATGTACGCC
ATTTTGGGTACCTTTATTGCGAAGTATGATATTAATATGGTGCAATCACC
AATCGACATGCAACCTTTACGTGGCATGACTTCAAAACCGAAAGATTTTC
TTTTGCAGTTGACACATGTCAATTAAATGATATCAGTCGCTATTATGTTT
TTATTGCTTGGCCTCGTTTTGAAGTATGTTGCTGTGGGGGATCAGAAGAA
GCCAAGGAAATTACCTTCTCCAACGGCCTTGCCTATCATTGGTCATTTGC
ATTTGATTGGTTCAAAATCACTTCATGTCGTCTTGGAATCAATGTCTAAC
ATTTTCGGCAAAGTTTATTCCCTGAAGTTGGGAGCCCACCATATTACAGT
GCTGTGCAGTCAGAAAGCTATGAAGGAAGCTTTCGTTAAAAACGCAAAGA
AGTTCAGCGGAAGACCGGACCTTCCGACATTTTCATACACAAGATACGGG
CGTACCGGAATCTCTTTGTGCGACCATAGTCCATTATATGTTCAAAATCG
GAAGAGAGCTGTTCAAAGCTTGCACAAGTTTTTGATGAACGAGAAGAATA
TGATTGGTATTTTTCAAAAGGAGGCTTCAAAGATGGTAGCTCTGTTTAAT
CAATATGTTTCAGAAGGGAAGACGTTTAACCCTTCCCATGACTTTGAGCG
GATTATTCCCAGCATGTTTCTCTCTATCATGTATGGAATAGATTTACCTT
ACCTGAGTACAGATCTTAAAGAAGTATCGCGCGTTTACAGAGATTGGTTT
GAGGTAGCCGAAGCGGATAACCCAGCTGATTTCTTCCCAGTACTTCAAAA
ATTTCCAAACAAAAGACTATCTGTGATTTCCAACTGCGGAAAAGAGTTCG
AACGCTTCAACATGGATATGCTTCGAAAGGAGCTCCAAAAACCGTCCGAT
GAAAACAACAATGGCGTTAACGCAGCTCCGACTACCATTTTGGAAAACCT
GTTGAAGAACGAGACAGCTGAATCACTTGAGAGCGAGGACACGTGTAAAG
AACTTGCAAAGCTTGTTTCAGATATGATTGGTGCTGGTTTTGATACTATT
CCCTCAACCTTGAGTTGGGCGTTTATTTACTTATCCAACAATCCTAACAT
TGTAAAGAAGTGCAGAGAGGAGCTAGATGGTTTATCAACAGACACGAACA
ATTTCAATTATACCAATAAATCGAAGACTCCTTATTTCATGGCAACCATT
TATGAGATCCTCCGTATGTCATGTGTGGCCCCAACAGGCGTCCTCCACAA
ATCAAACGAAGAAGCTCTGATACAAGGTTATGTTATCCCTAAAAATACAA
TCGTGATTGCAAATCTACATCAAATGAATTTCGACGAATCTACATGGTTG
AAACCTAACGAATTAAGACCCGAAAGGTTCCTGAATGATTCAAATGAACT
TGACTCTAAGCTGTGTAACGAAATTGCCACATTTTCCGTGGGCACGCGCA
GGTGTCCTGGCGACAAACTAGCAGTTGCAATGATGTACGCCATTTTGGGT
ACCTTTATTGCGAAGTATGATATTAATATGGTGCAATCACCAATCGACAT
GCAACCTTTACGTGGCATGACTTCAAAACCGAAAGATTTTCTTTTGCAGT
TGACACATGTCAATTAAATGATATCAGTCGCTATTATGTTTTTATTGCTT
GGCCTCGTTTTGAAGTATGTTGCTGTGGGGGATCAGAAGAAGCCAAGGAA
ATTACCTTCTCCAACGGCCTTGCCTATCATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021273-exon-sc0000380-1575043694:205746..206084 | TCONS_00021273-exon-sc0000380-1575043694:205746..206084 | Clytia hemisphaerica | exon |
| TCONS_00021273-exon-sc0000380-1575043694:203848..205341 | TCONS_00021273-exon-sc0000380-1575043694:203848..205341 | Clytia hemisphaerica | exon |
| TCONS_00021273-exon-sc0000380-1510915933:205746..206084 | TCONS_00021273-exon-sc0000380-1510915933:205746..206084 | Clytia hemisphaerica | exon |
| TCONS_00021273-exon-sc0000380-1510915933:203848..205341 | TCONS_00021273-exon-sc0000380-1510915933:203848..205341 | Clytia hemisphaerica | exon |
| TCONS_00021273-exon-sc0000380-1491911889:205746..206084 | TCONS_00021273-exon-sc0000380-1491911889:205746..206084 | Clytia hemisphaerica | exon |
| TCONS_00021273-exon-sc0000380-1491911889:203848..205341 | TCONS_00021273-exon-sc0000380-1491911889:203848..205341 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000380 | supercontig | sc0000380:203848..206084 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005506 | iron ion binding |
| GO:0020037 | heme binding |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0020037 |
heme binding |
| molecular_function |
GO:0005506 |
iron ion binding |
| molecular_function |
GO:0016705 |
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Blast
BLAST of TCONS_00021273 vs. Swiss-Prot (Human)
Match: CP1A1 (Cytochrome P450 1A1 OS=Homo sapiens GN=CYP1A1 PE=1 SV=1) HSP 1 Score: 218.009 bits (554), Expect = 1.174e-62 Identity = 129/495 (26.06%), Postives = 244/495 (49.29%), Query Frame = 3
Query: 216 ADKMISVAIMFLLLGLVLKYVAVGDQKKPRKLPSPTALPIIGHLHLIGSKSLHVVLESMSNIFGKVYSLKLGAHHITVLCSQKAMKEAFVKNAKKFSGRPDLPTFSYTRYGRTGISLCDHSPLYVQNRKRAVQSLHKFLMNEKNMIGI-------FQKEASKMVALFNQYVSEGKTFNPSHDFERIIPSMFLSIMYGIDLPYLSTDLKEVSRVYRDWFEVAEADNPADFFPVLQKFPNKRLSVISNCGKEFERFNMDMLRKELQKPSDENNNGVNAAPTTILENLLKNETAESLESEDTCKELAKLVSDMIGAGFDTIPSTLSWAFIYLSNNPNIVKKCREELDGLSTDTNNFNYTNKSKTPYFMATIYEILRMSCVAPTGVLHKSNEEALIQGYVIPKNTIVIANLHQMNFDESTWLKPNELRPERFLNDSNELDSKLCNEIATFSVGTRRCPGDKLAVAMMYAILGTFIAKYDINM-VQSPIDMQPLRGMTSK 1676
A + + +++F L+ V++ K + P P P+IGH+ +G K+ H+ L MS +G V +++G+ + VL +++A V+ F GRPDL TF+ G++ D P++ R+ A L F + KEA +++ + ++ FNP + ++ +I +G + +L + + ++ EV + NPADF P+L+ PN L+ + ++F F M+ KE K ++ + + +++E+ + + E+ + + +++ +V D+ GAGFDT+ + +SW+ +YL NP + +K +EELD + + +++S PY A I E R S P + H + + ++G+ IPK V N Q+N D+ W+ P+E PERFL +D L ++ F +G R+C G+ +A ++ L + + + ++ + +DM P+ G+T K
Sbjct: 9 ATEFLLASVIFCLVFWVIRASRPQVPKGLKNPPGPWGWPLIGHMLTLG-KNPHLALSRMSQQYGDVLQIRIGSTPVVVLSGLDTIRQALVRQGDDFKGRPDLYTFTLISNGQSMSFSPDSGPVWAARRRLAQNGLKSFSIASDPASSTSCYLEEHVSKEAEVLISTLQELMAGPGHFNPYRYVVVSVTNVICAICFGRRYDHNHQELLSLVNLNNNFGEVVGSGNPADFIPILRYLPNPSLNAFKDLNEKFYSFMQKMV-KEHYKTFEKGH--IRDITDSLIEHCQEKQLDENANVQLSDEKIINIVLDLFGAGFDTVTTAISWSLMYLVMNPRVQRKIQEELDTVIGRSRRPRLSDRSHLPYMEAFILETFRHSSFVPFTIPHSTTRDTSLKGFYIPKGRCVFVNQWQINHDQKLWVNPSEFLPERFLTPDGAIDKVLSEKVIIFGMGKRKCIGETIARWEVFLFLAILLQRVEFSVPLGVKVDMTPIYGLTMK 499
The following BLAST results are available for this feature:
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