TCONS_00021189 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021189
Unique NameTCONS_00021189
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1762

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021189 ID=TCONS_00021189|Name=TCONS_00021189|organism=Clytia hemisphaerica|type=transcript|length=1762bp
caaaatggcagctTTTTAAACgAGAGAATTTGGCAAAACTGTTTATCAAA
TATCGTATCGAGCACTAATGAAGCCTCCGACAGCATTGGAGAAGCTTCCT
TTACCACCTCTGGTGTCAATTGGTCTCATCCTGATTATTTTATCCTTTGC
AATCATCGTCCCATTGTATTTCATCATCAAGTATAAACAAGAATGCTTCA
AGTTTtggaaaaagctttttaaaccTTTCATTAAGTATTGCTTAGCTGGT
GATGCAGCTGATGGTATCGATTTATGTAAAGTTCAGCTGACAAAACGTAC
ATTTTACGAGCGCGTCCACCCGTCAGTCAACGAGCTAGAATTCAGTCGTC
TTGATGAAAATGACACAAAATTTGGCATTACTTTGggtcaagttcatttt
ggattAAATTATGACAgcgtcaaaaatattttgaaaatcaaaatttatga
agCAAAAGATTTACCGGCAGCCGATGAAGGTGGAGCGTCCGATCCATACA
TTCGTATTATGTTATTACCGGACACTAAAAAACGGTTCGAAACTATTGTT
CTTGATGATACACTCGATCCAGTCTACAATCAAGAATTTGTCTTCAAAAA
TATGCCACTGTCTGAACTCCAAAAACGTAAACTTTGCATCCAAGCTTTAG
ATTTTGATACACAACCTATACATGATATTTTAGGAGAAACTTTAATCCCA
CTCATCGATTTAAACATTGTTACAAAACATAATAGTAAAGATCTTATAGA
TTTTTGGCGGATTTTAGTTCCCGGTTATGATCCCGATAATCCGGGTGAAT
TCAAACAATCACAATCGGATTACGGTGATATATGTGTATCGCTACATTAC
ATGCCTGCCGTGGCGACATTGAAAGTGTATATTATAGAATGTAAGAACTT
GAAAAGTGTTGATGAGGGTGGAGTGTCGGATCCTTTCGTTAAAGTCACca
taatgaaaaataaagtaaaactaaaatcgcaaaaaactgaaGTTATCAAA
CAGACGTTAGATCCATATTACAATAAAGAGATGAAATTTAAGTTGGACCC
GGCTGACGCACCTGTTACTGATCTACGATTTTTGGTTATGGATTATGATT
TCCCTATCGGCGCTGACGTCATCGGCGAGGTCGTCATTGGAGCCAATTCG
TACGGACCGCAGAAGAGACAATGGAGAGATATGTTAAGGTCTCAGAAAAG
ACCAATCGCGTGTTGGCATATGTTGAGACCAAAAACGAAGAAAGGCGAGG
AGGATTAAAATCTGCCTTCATTTTACAATTCGGAAACCACTATATGTTTA
GGAATAGGAATAGGTCATTTTCCCTTTGTAGCTTTAATTCCTGCTTTCAT
GTCAGTGCTACCGTATAtacctataacaatccaaaaggtCCCTTTCAGTG
CCCACgggaaaaaatggcaaaaaaattgataaagaaaTTTTCGAAGTAAT
GCAGTTGTTTTCGGCgggcgaaaatgaaaaaaagtattttgagcAGCCGA
TGACATGTATATTTTGTTCTCACCAGTTGTTAGCCGCCAGGCCCTATGTC
AACTATATACTGGACATGACTTATCAATCTTTGCCCAGTTGTTTTTTGTG
CGGCTgctcaatacactcttctcgagatgcataaatttactgttgtcctc
gttttcaaacagatttcattgctatgaaattatatattTAATCCAATTtg
aattcccaaaaggcaagcattaactctaaaacaaaagtacttgaaattca
aaatgtctcatg
Run BLAST on NCBI

protein sequence of TCONS_00021189-protein

>TCONS_00021189-protein ID=TCONS_00021189-protein|Name=TCONS_00021189-protein|organism=Clytia hemisphaerica|type=polypeptide|length=396bp
MKPPTALEKLPLPPLVSIGLILIILSFAIIVPLYFIIKYKQECFKFWKKL
FKPFIKYCLAGDAADGIDLCKVQLTKRTFYERVHPSVNELEFSRLDENDT
KFGITLGQVHFGLNYDSVKNILKIKIYEAKDLPAADEGGASDPYIRIMLL
PDTKKRFETIVLDDTLDPVYNQEFVFKNMPLSELQKRKLCIQALDFDTQP
IHDILGETLIPLIDLNIVTKHNSKDLIDFWRILVPGYDPDNPGEFKQSQS
DYGDICVSLHYMPAVATLKVYIIECKNLKSVDEGGVSDPFVKVTIMKNKV
KLKSQKTEVIKQTLDPYYNKEMKFKLDPADAPVTDLRFLVMDYDFPIGAD
VIGEVVIGANSYGPQKRQWRDMLRSQKRPIACWHMLRPKTKKGEED
Run BLAST on NCBI

transcript from alignment at sc0000379:205564..210451-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021189 ID=TCONS_00021189|Name=TCONS_00021189|organism=Clytia hemisphaerica|type=transcript|length=4888bp|location=Sequence derived from alignment at sc0000379:205564..210451- (Clytia hemisphaerica)
CAAAATGGCAGCTTTTTAAACGGTAAACAATATTTTTTGCTTTGTTTTTG
TCTGTCTTGGGTCATTTTTACTCGAAGTATGCTAATTTTTTTGGCTTTTT
CTAAAAAAGGCAAAAATGGGCTCTTCCAGAAAAAATCCGTTCATGGGGGG
TGGAGGATATATATTTTTTTTTCATGAATTACCCCTGGACATTTTGATTT
TTAACCCCCTGGACACGTTATACCCCTGGACAAACATCAAATCAACCCCG
TGGACACAAAAAATTACCCCTTGACATTGGAATTTACCCCCTGGACATTG
TATTTTTTTGGTATTTTTTCAATACCCCTGGACAATTCCACCCCCCCCAT
GAACGGATTCTTTCTGGAAGAGCCCAAGAGAATCCCAACTTTTTAGCGAT
ATTGGCAATATACTATACTACAAATCATTATTTGAGTTTTAGTTACGGGA
CAATAAGATAAGCCTGTAGATTCCTTTCTTATTCCTGAGCAAAACCTCCA
AATCTTTTCAAAAGTCAAGAAATGATAATCTAAAATCTCTAAATATAAAA
ATCTTTTTCTCACTAAAATTAAAAATTATAACTTGAATACACGCTTTTTT
TTATAAGAATGGTGTTCTCTCATTTCATGATGTTGGTATTCTTAACTTTT
TAGGGAAAGTCATCCTACGATATTCTTACGATATATTCTAAGGTTAGGAT
CCAATCCATCCTAAATCTTGTATGTTATACATACTTCGAACAAAGATTTG
GCATTTTTGTGAAAGATTTTAGACAATTAGCAATTTACAGGTAAAATGCT
CTAAAAATTGCCATTCTTGAGGGTTCATTTGCCAAATTCCATGATGGTGT
TATTCTTAGCATAGTATTCTTAATTTGTTTGCTAATTTCATCATGAATAT
TCTATAAAGTATAAAGTATACTCTTATAAAAAAGCGTGTATCTTTAGTCA
TTCCAGGATCACAATATTTTTCTCAGATTTTTTAGTCTCGTTGTTCTTAT
TATTATATCATTAATTTGTTTTTAGAGAGAATTTGGCAAAACTGTTTATC
AAATATCGTATCGAGCACTAATGAAGCCTCCGACAGCATTGGAGAAGCTT
CCTTTACCACCTCTGGTGTCAATTGGTCTCATCCTGATTATTTTATCCTT
TGCAATCATCGTCCCATTGTATTTCATCATCAAGTATAAACAAGAATGCT
TCAAGTTTTGGAAAAAGCTTTTTAAACCTTTCATTAAGTATTGCTTAGCT
GGTGATGCAGGTATTTTGGATAAATAATGGCTCTAGTTTAGACCACTGAC
CTTTATATAACCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTCCTCAAATTCTTTTGATGATGTAGCGGCGTTAAACGTTA
ATTTTTAGCATTGCAATGGCTTCTCCTTGGGTACCAATTCTAAAAAAACT
CCAATCAAAGATGGCAAATATTGCTTGGTCCAGGGTTATATAAAGGTCAG
TGGTTTAGACGGACGATTTTCTTCCCTGTCTAGAGGGGATTTATCTAAAG
AATCCTGCATTACTAAAAATAGACAAAAAGAACGACAAATTTCATAAAAA
ACGACATATTTCGCCGTTCACAACCCCGACCGAAAGTGACTGTACCACCC
CTAGCGATTCATTCCCTTTCGTTTATCACGGGAAATAACTACGTGTGGTT
CAAAAGAACGACAAATTACGCATGCGTGTTACAATGCAGGATTCTTTAGA
GGAACAGACTGCTATTCTAATTGTTAGGCAGAAAGTGGGCACAAAGTCGG
CAAGTTAAACTTTAAAGATTGAAAGAAGACATTGCATTGACGTTTAAAGA
AGGCAATGCATCGACCTTAAGGCTGGTCTCCACTTTCGCGCGACATGAGC
GAAAACTTTTTTATGACGTAATCTTTTCTTCAGGCAAAAAAGGTTACGAA
AAAAACTGTCGCCCATTTCGCGTGAAAGTGGAGACCGGCCTTTAGACAGC
CCACTTTCTGCAAACTTTAATTCAAAATTAAGATAGGCAGGGCGAAAAGT
GGGCCGTCTAAACTAGAACTTGGTATCATTTTTCCTCAGTGCTAACATGT
GTGTGATATTATTTTCTGAAGTCGATTTTAAAGTGCTAGAAAACTCGAGC
TTTCATTATTAGACCAATACCTAAACTTCTGTCATGCGTAACTTTAGCCA
AAAATTCAAACTTTATTAATGTGTCTTTTCTAATTTGCCCCTATTTTATC
AAAATTATTTAAAATACATATCTTAACAGTATACCACTACCCTTTAAAAT
CTGTACACTTTAAAATTACCAAATTACGGACCTAAACAAATGCCAACTCC
CCTGAAAATTCTGATGCTCTGATCTTTATCAAAGTGATTCATTTTTCCAG
CTGATGGTATCGATTTATGTAAAGTTCAGCTGACAAAACGTACATTTTAC
GAGCGCGTCCACCCGTCAGTCAACGAGCTAGAATTCAGTCGTCTTGATGA
AAATGACACAAAATTTGGCATTACTTTGGGTCAAGTTCATTTTGGATTAA
ATTATGACAGCGTCAAAAATATTTTGAAAATCAAAATTTATGAAGCAAAA
GATTTACCGGCAGCCGATGAAGGTAAAGAATAATGGAACTCCTCACTTTT
TCTTTTAAATTAAAAACGAAAGGATTTTTTCTAATTCGACTCTCTATTAT
TCGAAAACAATGTTGGTCCCTTCAGCTCGAGATTGTTATTTTACTTTGAA
TCTTTCTCTAATTCGAAAAATTTGAGGGATTGGGTAGTGTATGGACAACA
ATAAGTCTCTCACTTTTTTTGTAATGATTTGTTATAAGAAACAGGAACTT
TTATGTTGTTTTTTAAATATCACGATTCATTCATTTAAAAGCCTCAATTC
TGGCCAAAATAAGTCTAAATAAAGCATTTCTAAGGCATATTAGGGTGTTA
AAATTGAGATTTTCTCTCGACAGCGTGAACCTTTGTTGCGCCTTAATACT
CACTACATTTTTTGCCACCCACTTCCCAGACCATGTACATGATTTACATT
ANTTAATACTCACTACATTTTTTGCCACCCACTTCCCAGACCATGTACAC
GATTTACATTTGAGATATCCACTGACCTTTATATATCCCTGGACCAAGTT
ACTCAATGCCGGCTAAGCAAAATATTATGATCGGAGTTTTTTTGAAATTG
GTACCGGCGGATAGAGCGCTAGATCTTCTATCGCTTGTACACTAGTGATA
TAGCACCGTTTGTCGGTAGGCAAAGTTTCAAACACTACAATGGTTTCTTT
GCGGGTACCAACTTTCAAAAAACTTCGATCAAAGATGGCGGATATAGCTT
GGTCCAGGGATATATAAAGGTCAGTGGATGTATCCCTGTTTCTTTCATCT
CACAGGTGGAGCGTCCGATCCATACATTCGTATTATGTTATTACCGGACA
CTAAAAAACGGTTCGAAACTATTGTTCTTGATGATACACTCGATCCAGTC
TACAATCAAGAATTTGTCTTCAAAAATATGCCACTGTCTGAACTCCAAAA
ACGTAAACTTTGCATCCAAGCTTTAGATTTTGATACACAACCTATACATG
ATATTTTAGGAGAAACTTTAATCCCACTCATCGATTTAAACATTGTTACA
AAACATAATAGTAAAGATCTTATAGATTTTTGGCGGATTTTAGTTCCCGG
TTATGATCCCGATAATCCGGGTGAATTCAAACAATCACAATCGGATTACG
GTGATATATGTGTATCGCTACATTACATGCCTGCCGTGGCGACATTGAAA
GTGTATATTATAGAATGTAAGAACTTGAAAAGTGTTGATGAGGGTGGAGT
GTCGGATCCTTTCGTTAAAGTCACCATAATGAAAAATAAAGTAAAACTAA
AATCGCAAAAAACTGAAGTTATCAAACAGACGTTAGATCCATATTACAAT
AAAGAGATGAAATTTAAGTTGGACCCGGCTGACGCACCTGTTACTGATCT
ACGATTTTTGGTTATGGATTATGATTTCCCTATCGGCGCTGACGTCATCG
GCGAGGTCGTCATTGGAGCCAATTCGTACGGACCGCAGAAGAGACAATGG
AGAGATATGTTAAGGTCTCAGAAAAGACCAATCGCGTGTTGGCATATGTT
GAGACCAAAAACGAAGAAAGGCGAGGAGGATTAAAATCTGCCTTCATTTT
ACAATTCGGAAACCACTATATGTTTAGGAATAGGAATAGGTCATTTTCCC
TTTGTAGCTTTAATTCCTGCTTTCATGTCAGTGCTACCGTATATACCTAT
AACAATCCAAAAGGTCCCTTTCAGTGCCCACGGGAAAAAATGGCAAAAAA
ATTGATAAAGAAATTTTCGAAGTAATGCAGTTGTTTTCGGCGGGCGAAAA
TGAAAAAAAGTATTTTGAGCAGCCGATGACATGTATATTTTGTTCTCACC
AGTTGTTAGCCGCCAGGCCCTATGTCAACTATATACTGGACATGACTTAT
CAATCTTTGCCCAGTTGTTTTTTGTGCGGCTGCTCAATACACTCTTCTCG
AGATGCATAAATTTACTGTTGTCCTCGTTTTCAAACAGATTTCATTGCTA
TGAAATTATATATTTAATCCAATTTGAATTCCCAAAAGGCAAGCATTAAC
TCTAAAACAAAAGTACTTGAAATTCAAAATGTCTCATG

Coding sequence (CDS) from alignment at sc0000379:205564..210451-

>TCONS_00021189 ID=TCONS_00021189|Name=TCONS_00021189|organism=Clytia hemisphaerica|type=CDS|length=3573bp|location=Sequence derived from alignment at sc0000379:205564..210451- (Clytia hemisphaerica)
GTGGAGCGTCCGATCCATACATTCGTATTATGTTATTACCGGACACTAAA
AAACGGTTCGAAACTATTGTTCTTGATGATACACTCGATCCAGTCTACAA
TCAAGAATTTGTCTTCAAAAATATGCCACTGTCTGAACTCCAAAAACGTA
AACTTTGCATCCAAGCTTTAGATTTTGATACACAACCTATACATGATATT
TTAGGAGAAACTTTAATCCCACTCATCGATTTAAACATTGTTACAAAACA
TAATAGTAAAGATCTTATAGATTTTTGGCGGATTTTAGTTCCCGGTTATG
ATCCCGATAATCCGGGTGAATTCAAACAATCACAATCGGATTACGGTGAT
ATATGTGTATCGCTACATTACATGCCTGCCGTGGCGACATTGAAAGTGTA
TATTATAGAATGTAAGAACTTGAAAAGTGTTGATGAGGGTGGAGTGTCGG
ATCCTTTCGTTAAAGTCACCATAATGAAAAATAAAGTAAAACTAAAATCG
CAAAAAACTGAAGTTATCAAACAGACGTTAGATCCATATTACAATAAAGA
GATGAAATTTAAGTTGGACCCGGCTGACGCACCTGTTACTGATCTACGAT
TTTTGGTTATGGATTATGATTTCCCTATCGGCGCTGACGTCATCGGCGAG
GTCGTCATTGGAGCCAATTCGTACGGACCGCAGAAGAGACAATGGAGAGA
TATGTTAAGGTCTCAGAAAAGACCAATCGCGTGTTGGCATATGTTGAGAC
CAAAAACGAAGAAAGGCGAGGAGGATTAACTGATGGTATCGATTTATGTA
AAGTTCAGCTGACAAAACGTACATTTTACGAGCGCGTCCACCCGTCAGTC
AACGAGCTAGAATTCAGTCGTCTTGATGAAAATGACACAAAATTTGGCAT
TACTTTGGGTCAAGTTCATTTTGGATTAAATTATGACAGCGTCAAAAATA
TTTTGAAAATCAAAATTTATGAAGCAAAAGATTTACCGGCAGCCGATGAA
GATGAAGCCTCCGACAGCATTGGAGAAGCTTCCTTTACCACCTCTGGTGT
CAATTGGTCTCATCCTGATTATTTTATCCTTTGCAATCATCGTCCCATTG
TATTTCATCATCAAGTATAAACAAGAATGCTTCAAGTTTTGGAAAAAGCT
TTTTAAACCTTTCATTAAGTATTGCTTAGCTGGTGATGCAGGTGGAGCGT
CCGATCCATACATTCGTATTATGTTATTACCGGACACTAAAAAACGGTTC
GAAACTATTGTTCTTGATGATACACTCGATCCAGTCTACAATCAAGAATT
TGTCTTCAAAAATATGCCACTGTCTGAACTCCAAAAACGTAAACTTTGCA
TCCAAGCTTTAGATTTTGATACACAACCTATACATGATATTTTAGGAGAA
ACTTTAATCCCACTCATCGATTTAAACATTGTTACAAAACATAATAGTAA
AGATCTTATAGATTTTTGGCGGATTTTAGTTCCCGGTTATGATCCCGATA
ATCCGGGTGAATTCAAACAATCACAATCGGATTACGGTGATATATGTGTA
TCGCTACATTACATGCCTGCCGTGGCGACATTGAAAGTGTATATTATAGA
ATGTAAGAACTTGAAAAGTGTTGATGAGGGTGGAGTGTCGGATCCTTTCG
TTAAAGTCACCATAATGAAAAATAAAGTAAAACTAAAATCGCAAAAAACT
GAAGTTATCAAACAGACGTTAGATCCATATTACAATAAAGAGATGAAATT
TAAGTTGGACCCGGCTGACGCACCTGTTACTGATCTACGATTTTTGGTTA
TGGATTATGATTTCCCTATCGGCGCTGACGTCATCGGCGAGGTCGTCATT
GGAGCCAATTCGTACGGACCGCAGAAGAGACAATGGAGAGATATGTTAAG
GTCTCAGAAAAGACCAATCGCGTGTTGGCATATGTTGAGACCAAAAACGA
AGAAAGGCGAGGAGGATTAACTGATGGTATCGATTTATGTAAAGTTCAGC
TGACAAAACGTACATTTTACGAGCGCGTCCACCCGTCAGTCAACGAGCTA
GAATTCAGTCGTCTTGATGAAAATGACACAAAATTTGGCATTACTTTGGG
TCAAGTTCATTTTGGATTAAATTATGACAGCGTCAAAAATATTTTGAAAA
TCAAAATTTATGAAGCAAAAGATTTACCGGCAGCCGATGAAGATGAAGCC
TCCGACAGCATTGGAGAAGCTTCCTTTACCACCTCTGGTGTCAATTGGTC
TCATCCTGATTATTTTATCCTTTGCAATCATCGTCCCATTGTATTTCATC
ATCAAGTATAAACAAGAATGCTTCAAGTTTTGGAAAAAGCTTTTTAAACC
TTTCATTAAGTATTGCTTAGCTGGTGATGCAGGTGGAGCGTCCGATCCAT
ACATTCGTATTATGTTATTACCGGACACTAAAAAACGGTTCGAAACTATT
GTTCTTGATGATACACTCGATCCAGTCTACAATCAAGAATTTGTCTTCAA
AAATATGCCACTGTCTGAACTCCAAAAACGTAAACTTTGCATCCAAGCTT
TAGATTTTGATACACAACCTATACATGATATTTTAGGAGAAACTTTAATC
CCACTCATCGATTTAAACATTGTTACAAAACATAATAGTAAAGATCTTAT
AGATTTTTGGCGGATTTTAGTTCCCGGTTATGATCCCGATAATCCGGGTG
AATTCAAACAATCACAATCGGATTACGGTGATATATGTGTATCGCTACAT
TACATGCCTGCCGTGGCGACATTGAAAGTGTATATTATAGAATGTAAGAA
CTTGAAAAGTGTTGATGAGGGTGGAGTGTCGGATCCTTTCGTTAAAGTCA
CCATAATGAAAAATAAAGTAAAACTAAAATCGCAAAAAACTGAAGTTATC
AAACAGACGTTAGATCCATATTACAATAAAGAGATGAAATTTAAGTTGGA
CCCGGCTGACGCACCTGTTACTGATCTACGATTTTTGGTTATGGATTATG
ATTTCCCTATCGGCGCTGACGTCATCGGCGAGGTCGTCATTGGAGCCAAT
TCGTACGGACCGCAGAAGAGACAATGGAGAGATATGTTAAGGTCTCAGAA
AAGACCAATCGCGTGTTGGCATATGTTGAGACCAAAAACGAAGAAAGGCG
AGGAGGATTAACTGATGGTATCGATTTATGTAAAGTTCAGCTGACAAAAC
GTACATTTTACGAGCGCGTCCACCCGTCAGTCAACGAGCTAGAATTCAGT
CGTCTTGATGAAAATGACACAAAATTTGGCATTACTTTGGGTCAAGTTCA
TTTTGGATTAAATTATGACAGCGTCAAAAATATTTTGAAAATCAAAATTT
ATGAAGCAAAAGATTTACCGGCAGCCGATGAAGATGAAGCCTCCGACAGC
ATTGGAGAAGCTTCCTTTACCACCTCTGGTGTCAATTGGTCTCATCCTGA
TTATTTTATCCTTTGCAATCATCGTCCCATTGTATTTCATCATCAAGTAT
AAACAAGAATGCTTCAAGTTTTGGAAAAAGCTTTTTAAACCTTTCATTAA
GTATTGCTTAGCTGGTGATGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011867XLOC_011867Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021189-proteinTCONS_00021189-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021189-exon-sc0000379-1575043694:210430..210451TCONS_00021189-exon-sc0000379-1575043694:210430..210451Clytia hemisphaericaexon
TCONS_00021189-exon-sc0000379-1575043694:209192..209426TCONS_00021189-exon-sc0000379-1575043694:209192..209426Clytia hemisphaericaexon
TCONS_00021189-exon-sc0000379-1575043694:207630..207851TCONS_00021189-exon-sc0000379-1575043694:207630..207851Clytia hemisphaericaexon
TCONS_00021189-exon-sc0000379-1575043694:205564..206846TCONS_00021189-exon-sc0000379-1575043694:205564..206846Clytia hemisphaericaexon
TCONS_00021189-exon-sc0000379-1510915933:210430..210451TCONS_00021189-exon-sc0000379-1510915933:210430..210451Clytia hemisphaericaexon
TCONS_00021189-exon-sc0000379-1510915933:209192..209426TCONS_00021189-exon-sc0000379-1510915933:209192..209426Clytia hemisphaericaexon
TCONS_00021189-exon-sc0000379-1510915933:207630..207851TCONS_00021189-exon-sc0000379-1510915933:207630..207851Clytia hemisphaericaexon
TCONS_00021189-exon-sc0000379-1510915933:205564..206846TCONS_00021189-exon-sc0000379-1510915933:205564..206846Clytia hemisphaericaexon
TCONS_00021189-exon-sc0000379-1491911889:210430..210451TCONS_00021189-exon-sc0000379-1491911889:210430..210451Clytia hemisphaericaexon
TCONS_00021189-exon-sc0000379-1491911889:209192..209426TCONS_00021189-exon-sc0000379-1491911889:209192..209426Clytia hemisphaericaexon
TCONS_00021189-exon-sc0000379-1491911889:207630..207851TCONS_00021189-exon-sc0000379-1491911889:207630..207851Clytia hemisphaericaexon
TCONS_00021189-exon-sc0000379-1491911889:205564..206846TCONS_00021189-exon-sc0000379-1491911889:205564..206846Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000379supercontigsc0000379:205564..210451 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.205611	0.267332	0.0517318	0.0253067	0.308073	0.17041	1.26293	1.92474	0.808767	0.524593	0.972934	0.730338	1.86888	1.53056	1.32318	2.9652	1.57819	1.75776	0.413318	0.22888	1.12754	1.00202	0.734124	0.762105	0.613182	1.48857	0.15687	0.201399	0.532521	0.336303
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000008C2_dom
IPR001565Synaptotagmin
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
Blast
[Close]
BLAST of TCONS_00021189 vs. Swiss-Prot (Human)
Match: SYT1 (Synaptotagmin-1 OS=Homo sapiens GN=SYT1 PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.423e-60
Identity = 121/284 (42.61%), Postives = 168/284 (59.15%), Query Frame = 2 
Query:  383 LGQVHFGLNYDSVKNILKIKIYEAKDLPAADEGGASDPYIRIMLLPDTKKRFETIVLDDTLDPVYNQEFVFKNMPLSELQKRKLCIQALDFDTQPIHDILGETLIPL--IDLNIVTKHNSKDLIDFWRILVPGYDPDNPGEFKQSQSDYGDICVSLHYMPAVATLKVYIIECKNLKSVDEGGVSDPFVKVTIMKNKVKLKSQKTEVIKQTLDPYYNKEMKFKLDPADAPVTDLRFLVMDYDFPIGADVIGEVVIGANSYGPQKRQWRDMLRSQKRPIACWHMLR 1228
            LG++ + L+YD   N L + I +A +LPA D GG SDPY+++ LLPD KK+FET V   TL+PV+N++F FK +P SEL  + L +   DFD    HDI+GE  +P+  +D   VT+         WR        D     K+ Q   GDIC SL Y+P    L V I+E KNLK +D GG+SDP+VK+ +M+N  +LK +KT + K TL+PYYN+   F++         +   V+DYD     D IG+V +G NS G + R W DML + +RPIA WH L+
Sbjct:  143 LGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE--------WR--------DLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQ 409
The following BLAST results are available for this feature:
BLAST of TCONS_00021189 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYT11.423e-6042.61Synaptotagmin-1 OS=Homo sapiens GN=SYT1 PE=1 SV=1[more]
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