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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021186 ID=TCONS_00021186|Name=TCONS_00021186|organism=Clytia hemisphaerica|type=transcript|length=3539bpRun BLAST on NCBI protein sequence of TCONS_00021186-protein >TCONS_00021186-protein ID=TCONS_00021186-protein|Name=TCONS_00021186-protein|organism=Clytia hemisphaerica|type=polypeptide|length=780bp MDKKGLPDTRKIILTRSEPLVNLKKLRELSGFKAYNTTLYNQNRYHSHFGRun BLAST on NCBI transcript from alignment at sc0000379:412819..438735+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021186 ID=TCONS_00021186|Name=TCONS_00021186|organism=Clytia hemisphaerica|type=transcript|length=25917bp|location=Sequence derived from alignment at sc0000379:412819..438735+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000379:412819..438735+ >TCONS_00021186 ID=TCONS_00021186|Name=TCONS_00021186|organism=Clytia hemisphaerica|type=CDS|length=44517bp|location=Sequence derived from alignment at sc0000379:412819..438735+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00021186 vs. Swiss-Prot (Human)
Match: TTLL4 (Tubulin polyglutamylase TTLL4 OS=Homo sapiens GN=TTLL4 PE=1 SV=2) HSP 1 Score: 466.463 bits (1199), Expect = 6.302e-143 Identity = 248/519 (47.78%), Postives = 339/519 (65.32%), Query Frame = 1
Query: 724 LLKSLFSNKPPTLYFTIAEE-------------------------------------QENSDWLGVWGKHMKPPAFKGIDVFQKINHFPGTFHIGRKDKLWRNFCKMKIAYGKQDFNFVPQTYVLPHDLGQLKKVWEEGSTKNKWIIKPPASARGSGIKVINKWSQVPKKRPVVVQRYLAKPYLINGHKFDLRIYVYVTSFDPLRIYIFEDGLVRFATXXXXXXXXXXXNRYMHLTNYSVNKNNTSVYQSNNDNLEDSKTSYKWSLKELWKYFQNIGISSDRIWESIKDVAIKSILCGEANINTLIKQNISNRLSCHELFGLDIILDTKLKPWLLEVNISPSLHSNSDLDKKIKGQLVKDILNMTGFFLPRSLLINNSGRTSNIDEIAAERFWFEQRTLSSD----EKTKHTFYV-QRHEDLRTRCTILDILTPDDVMIIMETEDEFSRSGSFERLMPTSEQKNYLQFMQTPRYYNLLLDEWTKQYMRDAVRSGIGISLIQSLAEAGVHL---SDSVSV 2145
L+ SLF N PPT+YF +E + N DWLG WG HMK P+F+ I QK+NHFPG+F IGRKD+LWRN +M+ +GK++F+F PQ+++LP D L+K WE S++ KWI+KPPASARG GI+VI+KWSQ+PK+RP++VQRYL KPYLI+G KFDLRIYVYVTS+DPLRIY+F DGLVRFA+ KYS S KSL N++MHLTNYSVNK N YQ+N D + + +KW+LK LW Y G++SD IWE IKDV +K+I+ E + +L+K + SCHELFG DI+LD LKPW+LEVNISPSLHS+S LD IKGQ+++D+LN+ GF LP + I +S + + + ++ ++ + +K K +Y+ Q+ D ++LD+LTPDDV I++E EDEFSR G FER+ P+ YL+F + PRY+N+L +W ++Y + ++ G+ L++S G H+ SDS V
Sbjct: 575 LIYSLFPNVPPTIYFGTRDERVEKLPWEQRKLLRWKMSTVTPNIVKQTIGRSHFKISKRNDDWLGCWGHHMKSPSFRSIREHQKLNHFPGSFQIGRKDRLWRNLSRMQSRFGKKEFSFFPQSFILPQDAKLLRKAWE-SSSRQKWIVKPPASARGIGIQVIHKWSQLPKRRPLLVQRYLHKPYLISGSKFDLRIYVYVTSYDPLRIYLFSDGLVRFASCKYSPSMKSLGNKFMHLTNYSVNKKNAE-YQANADEM--ACQGHKWALKALWNYLSQKGVNSDAIWEKIKDVVVKTIISSEPYVTSLLKMYVRRPYSCHELFGFDIMLDENLKPWVLEVNISPSLHSSSPLDISIKGQMIRDLLNLAGFVLPNAEDIISSPSSCSSSTTSLPTSPGDKCRMAPEHVTAQKMKKAYYLTQKIPDQDFYASVLDVLTPDDVRILVEMEDEFSRRGQFERIFPSHISSRYLRFFEQPRYFNILTTQWEQKYHGNKLK---GVDLLRSWCYKGFHMGVVSDSAPV 1086 The following BLAST results are available for this feature:
BLAST of TCONS_00021186 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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