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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021174 ID=TCONS_00021174|Name=TCONS_00021174|organism=Clytia hemisphaerica|type=transcript|length=1254bp
CaatggttgattttttattatggaagtatttgacaaaaatatgtAGCAAT
GGTTTTTCACATTGTGAAATTCCACTCTGAGTAACTAAAATGTCTTCAAA
GTTAACGATAGAAGAAGAGGAAAGACGCCGGGTGCGCCGTGAACGTAATA
AAGTCGCCGCATCACGTTGTCGCGtcaaaagaaaatgtcacgtcAGAAGA
CTATTGAAGGAATCAGACGACCTGACGAAATCGAACAACAGTCTACAAAA
CGAAATCAATAAACTGGAATATGAGAAACAAAAACTAGAAGGAGCAATCA
AAAACCATGCGTGTAAAATGTCCAACAATGCTTTTTTGGAGGTCCATGGT
ACCACAAAGGATCGGTTATGCCGTTATGGTAACTAGATAGCATTTTCTAG
CATTTAGGATTTATTCTCAAATCAAATCTCACGAGTTTTTAAATTATAAC
AATTTaactctttcattttttttatgaaatccaAACTGAGTTGACCACTC
ACTGTCGTACTTTGTTCAAAATTAATTGAAGTATTTTCGATAATAGCTAC
TGAAAAGGAATCTACATCAATTCAAAGGACTAAATTAAAAAGTATACCTT
GTATTTTGACATTCGAATAAACAGCTGTAATAATTTTAATCAAGATATAG
TTTtacttataatttttttattacttgaattttttaattttttaatttct
ttttatattttactgACATTTTGTAAACCTAGATAACGAAACTGTCTGTC
AGTCAGCTTACAATGTTTTTTCATCGGCTACAATGTAACATTGAAGGAAA
CTTGAATGACGACAAAATTTCGGtcattgacaaactttttttcatattta
ctgAAACTTGACATGACTGACGACAAAACTGTTTTACATTGACTGAAACT
TGACTTGACTGACGACAAAACTCTTTTACTTTTGACTGAAACTTGACTTG
ATTGACGACAAAACTGTTTTACATTGACTGAAACTTGACTTGACTGACGA
CAAAACTCTTTTACTTTTGACTGAAACTTGACTTTATTGACGAAAAAACT
ATTTGACATTGACTGAAACTTGACTTGACTGACGACAAAACTGCTTTACT
TTGACTGAAACCTGACTTGACTGAcgacaaaattattttactttgACTGA
AGTTTGACTTGACTGACGACAAAACTCTTTTACTTAAACTGAAAGCTTGA
CTTGACTGACGACAAAACTCTTTTACTTAAACTGAAAGCTTGACTTGACT
GACG Run BLAST on NCBI transcript from alignment at sc0000379:255654..257831+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021174 ID=TCONS_00021174|Name=TCONS_00021174|organism=Clytia hemisphaerica|type=transcript|length=2178bp|location=Sequence derived from alignment at sc0000379:255654..257831+ (Clytia hemisphaerica)
CaatggttgattttttattatggaagtatttgacaaaaatatgtAGCAAT
GGTTTTTCACATTGTGAAATTCCACTCTGAGTAACTAAAATGTCTTCAAA
GGTATGAAATAACAATAGAAGGGCTTCTAAATAGATTGGGGTAAAGAATT
TGAATATAATAAGCCTGTGCAGCTGGGTATCTGAGTAGCAAATTATTTCT
CAGAGAGGGGCTTCTTTTCTCTATTTCTTGGATGTACATTAATTCATGTG
TGTATTACTATATTTCCCTTACAACCTCAGTTAACGATAGAAGAAGAGGA
AAGACGCCGGGTGCGCCGTGAACGTAATAAAGTCGCCGCATCACGTTGTC
GCGtcaaaagaaaatgtcacgtcAGAAGACTATTGAAGGTATTGTTTCTT
TATCAAACTGTCAAAATTTGTGACTAGACCAAATTGACTATTTTATAAAA
GATTAttcgagaaaaaccattttgtaggttttaaagGGGTACAGTAACTG
AAAACtggtttctacaaaacatcactgctagcgaaaaaaagcatagacag
cgtactttcaacacaaaatgtTTCAGCCttaaacccggggggggggggga
cNTCAGTTAACGATAGAAGAAGAGGAAAGACGCCGGGTGCGCCGTGAACG
TAATAAAGTCGCCGCATCACGTTGTCGCGtcaaaagaaaatgtcacgtcA
GAAGACTGTTGAAGGTATTGTTTCTTTATCAAACTGTCAAAAGACCAAAT
TGACTATTTTATAAAAGATTAttcgagaaaaaccattttgtaggtttaaA
AGGGGTAACTGAAAACTGGTTTCTACAAAAATGTTTCGGCCTTAAATTCC
CCCTGATTTTCAGAGAGAGGATACCTCTactttttgtaggttttaagggg
tatccactggtaatgCCCTtatatttacatatttttagactttcagGAGT
AAAAGTATTGTAAAGTCTTAACCTAAAACGAGCATGAAAATTCATTCCAA
GTTACCAGAAATGCCCAAAACAAATACTCTTTGTGtattcagaaaaaaag
aaacttcaGTACTCAATAGTAAGACACAAACTAATCAAAGTGatgtcaaa
aacaatttttgataactttcttCAAAAAACCAGGAATCAGACGACCTGAC
GAAATCGAACAACAGTCTACAAAACGAAATCAATAAACTGGAATATGAGA
AACAAAAACTAGAAGGAGCAATCAAAAACCATGCGTGTAAAATGTCCAAC
AATGCTTTTTTGGAGGTCCATGGTACCACAAAGGATCGGTTATGCCGTTA
TGGTAACTAGATAGCATTTTCTAGCATTTAGGATTTATTCTCAAATCAAA
TCTCACGAGTTTTTAAATTATAACAATTTaactctttcattttttttatg
aaatccaAACTGAGTTGACCACTCACTGTCGTACTTTGTTCAAAATTAAT
TGAAGTATTTTCGATAATAGCTACTGAAAAGGAATCTACATCAATTCAAA
GGACTAAATTAAAAAGTATACCTTGTATTTTGACATTCGAATAAACAGCT
GTAATAATTTTAATCAAGATATAGTTTtacttataatttttttattactt
gaattttttaattttttaatttctttttatattttactgACATTTTGTAA
ACCTAGATAACGAAACTGTCTGTCAGTCAGCTTACAATGTTTTTTCATCG
GCTACAATGTAACATTGAAGGAAACTTGAATGACGACAAAATTTCGGtca
ttgacaaactttttttcatatttactgAAACTTGACATGACTGACGACAA
AACTGTTTTACATTGACTGAAACTTGACTTGACTGACGACAAAACTCTTT
TACTTTTGACTGAAACTTGACTTGATTGACGACAAAACTGTTTTACATTG
ACTGAAACTTGACTTGACTGACGACAAAACTCTTTTACTTTTGACTGAAA
CTTGACTTTATTGACGAAAAAACTATTTGACATTGACTGAAACTTGACTT
GACTGACGACAAAACTGCTTTACTTTGACTGAAACCTGACTTGACTGAcg
acaaaattattttactttgACTGAAGTTTGACTTGACTGACGACAAAACT
CTTTTACTTAAACTGAAAGCTTGACTTGACTGACGACAAAACTCTTTTAC
TTAAACTGAAAGCTTGACTTGACTGACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021174-exon-sc0000379-1491911889:255654..255754 | TCONS_00021174-exon-sc0000379-1491911889:255654..255754 | Clytia hemisphaerica | exon |
| TCONS_00021174-exon-sc0000379-1510915933:255654..255754 | TCONS_00021174-exon-sc0000379-1510915933:255654..255754 | Clytia hemisphaerica | exon |
| TCONS_00021174-exon-sc0000379-1575043694:255654..255754 | TCONS_00021174-exon-sc0000379-1575043694:255654..255754 | Clytia hemisphaerica | exon |
| TCONS_00021174-exon-sc0000379-1491911889:255934..256041 | TCONS_00021174-exon-sc0000379-1491911889:255934..256041 | Clytia hemisphaerica | exon |
| TCONS_00021174-exon-sc0000379-1510915933:255934..256041 | TCONS_00021174-exon-sc0000379-1510915933:255934..256041 | Clytia hemisphaerica | exon |
| TCONS_00021174-exon-sc0000379-1575043694:255934..256041 | TCONS_00021174-exon-sc0000379-1575043694:255934..256041 | Clytia hemisphaerica | exon |
| TCONS_00021174-exon-sc0000379-1491911889:256787..257831 | TCONS_00021174-exon-sc0000379-1491911889:256787..257831 | Clytia hemisphaerica | exon |
| TCONS_00021174-exon-sc0000379-1510915933:256787..257831 | TCONS_00021174-exon-sc0000379-1510915933:256787..257831 | Clytia hemisphaerica | exon |
| TCONS_00021174-exon-sc0000379-1575043694:256787..257831 | TCONS_00021174-exon-sc0000379-1575043694:256787..257831 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000379 | supercontig | sc0000379:255654..257831 + |
Blast
The following BLAST results are available for this feature:
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