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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021098 ID=TCONS_00021098|Name=TCONS_00021098|organism=Clytia hemisphaerica|type=transcript|length=1039bp
TAAAAGGCCAACGAAAACTTTGTAAAACGCACTGAAGGAGTTCAAAGAAC
ACCGAAATGGCGTTAAAAAGATTTCAAGCGGTTTTTATGCTGATAATTCT
ACAATTAATCAATTGAGCAGAAGCAGCGCGTAATACCACAACAATCGATG
ACTTGGTTGAGCAGTCCATCTCAAATCTCCAACAAATCAAACTCAAGTAC
AAATCATTGGCACTCATAAGTAAACTTTACGGGCACTGTGGTCCCTGCAA
GCCGACCCCTAAAAGTGAATATTGTGACTGCACCAATGCCAACCCTATGG
AAGATTGTCTCAAATTTCTACAAGCTGGCTATAAAGTGAATGGTATCTAC
CGCCTGAAAGCTGCCGGATTTAACAGACCGCATGTCTTCTGTGATCAAAC
AACTCTTGGTGGTGGTTGGACAACTTTTTTGAGACGAAAGGATGGATCTG
TCAACTTCAAACAAAATTGGAAAATGTACAGGAATGGCTTCGGTGAATTG
ACCAGTGAGTTTTGGCTTGGAAATGAAATCGTCCATGGTCTGACCGAATC
ATCAGTTGCACCAAAAAAGTCCGAATTGCTTATCAATATGCAAATCAAAG
GAGCAAAGAGTCCCACTTATGCAAAATATGACAACTTTGAAATTGGAGAT
GAGGCAAGCAAATATATTTTGAAGTTCAGCGGTGTATCAGGCAATGCATC
TCATCTGACAGGAGACAACTCCCTAAATCACAGTAACAACAGGAGATTCT
CCACTATTGATGCTGACAACGACGACAATTCTAGCAGTTGTAGCAAAAGT
TATGGAAGTGTTGGATGGTGGTTCGGGAATTGTGTCTATACAGTGTTGAC
CGCCGACTACAAAAACATTTATTGGCACGGCTCTTCTGCGCTCGCAAACT
TCGCCGAAATGAAACTTCGCAGAAAGCTGTAATACTAAAAgGAGCAACCA
CCGAACGAAGACAATCATAAAGAGGAGAAAAAtctcattttattttataa
aagtcTTTGTTATTTGAATAAAGTTTCCTTGcataaaaa Run BLAST on NCBI protein sequence of TCONS_00021098-protein >TCONS_00021098-protein ID=TCONS_00021098-protein|Name=TCONS_00021098-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
MEDCLKFLQAGYKVNGIYRLKAAGFNRPHVFCDQTTLGGGWTTFLRRKDG
SVNFKQNWKMYRNGFGELTSEFWLGNEIVHGLTESSVAPKKSELLINMQI
KGAKSPTYAKYDNFEIGDEASKYILKFSGVSGNASHLTGDNSLNHSNNRR
FSTIDADNDDNSSSCSKSYGSVGWWFGNCVYTVLTADYKNIYWHGSSALA
NFAEMKLRRKL Run BLAST on NCBI transcript from alignment at sc0000378:208606..217857+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021098 ID=TCONS_00021098|Name=TCONS_00021098|organism=Clytia hemisphaerica|type=transcript|length=9252bp|location=Sequence derived from alignment at sc0000378:208606..217857+ (Clytia hemisphaerica)
TAAAAGGCCAACGAAAACTTTGTAAAACGCACTGAAGGAGTTCAAAGAAC
ACCGAAATGGCGTTAAAAAGATTTCAAGCGGTTTTTATGCTGATAATTCT
ACAATTAATCAATTGAGCAGAAGCAGCGCGTAATACCACAACAATCGATG
ACTTGGTTGAGCAGTCCATCTCAAATCTCCAACAAATCAAACTCAAGTAC
AAATCATTGGCACTCATAAGTAAACTTTACGGGCACTGTGGTCCCTGCAA
GCCGACCCCTAAAAGTGAATATTGTGACTGCACCAATGCCAACCCTATGG
AAGATTGTCTCAAATTTCTACAAGCTGGCTATAAAGTGAATGGTATCTAC
CGCCTGAAAGCTGCCGGATTTAACAGACCGCATGTCTTCTGTGATCAAAC
AACTCTTGGTGGTGGTTGGACAACTTTTTTGAGACGAAAGGATGGATCTG
TCAACTTCAAACAAAATTGGAAAATGTACAGGAATGGCTTCGGTGAATTG
ACCAGTGAGTTTTGGCTTGGAAATGAAATCGTCCATGGTCTGACCGAATC
ATCAGTTGCACCAAAAAAGTCCGAATTGCTTATCAATATGCAAATCAAAG
GAGCAAAGAGTCCCACTTATGCAAAATATGACAACTTTGAAATTGGAGAT
GAGGCAAGCAAATATATTTTGAAGTTCAGCGGTGTATCAGGCAATGCATC
TCATCTGACAGGAGACAACTCCCTAAATCACAGTAACAACAGGAGATTCT
CCACTATTGATGCTGACAACGACGACAATTCTAGCAGTTGTAGCAAAAGT
TATGGAAGTGTTGGATGGTGGTTCGGGAATTGTGTCTATACAGTGTTGAC
CGCCGACTACAAAAACATTTATTGGCACGGCTCTTCTGCGCTCGCAAACT
TCGCCGAAATGAAACTTCGCAGAAAGCTGTAATACTAAAAggtataaaaa
attatgttgacCGTCCGGTTACTCTGccttacttcccaattctatgaTTC
ACGCCCTACTTTAGTTAGAGAAATAATTAACTCGAAAATCAGCCCTATTC
CTAAAATTGAGTCTCCCGCTGATCCGAGCGACTACCGTCCAATCTCCATA
TTACCGATCCTTTCAAAAGTATACGAGAGACTGATTATGACACAAATGAC
AAACTATCTAGAAAGTGAAGAACTACTATCAAAACATCAATCTGGTTTTC
GAAAGGGTCACTGCACAATAACCACctgcatcaaaatcaaaaacgaCATC
CTGAAAGCGATGAATCGAGGCGAAATCACTCTTGCAGTTCTCGCTGACTT
TTCAAAAGCATTTGATACAGTTGATTTTGAACTCTTAtcaaactagccgt
attgtataagggttgcgaagcgatccagactccacctgaattcgcaagtt
gctagcaaaataagagacactctaaaaatcactctaataaagccgctata
gagacagggtcgtaaaagagccttaatgccaaacacaccacataacccac
ggcggcacaacacccacCGCCGCCCGCAAGTCACTcattttttccttcta
gttattctagtgtaaatagTGCCTTATTAAAATCGAGCGATATTCGTCGA
ATGATCGAgcatttttattcaaatcacgaatcgtctgtcgaatgaaatca
tcaaaacataaaaataaaacaaaaacaaaaatgtacaaaaatggtttgtt
ggttcttgggtAGTTTTGAtcgagggatgatgaagatcctttctgtcacc
gttcaaactaatttttttttccatttaacagcaaaataaacatttaaaac
cgaagaaccactgcttagattgcttagatgcgtgccgcccgcgcggcgaT
CTGaccaacttcagattctaagtacGTGTTTTCGGCATccggtaattttt
tttgctgttcactgctagggtacaccattttaaaacggcatttttcgcag
tcctagctaccaaaccgagaaagttttcNaagccaaaccattcaaggtca
ttttgataaaatcatcggtttgaagatgtgatttatatagcaaattttat
agaaaattttcgcttgggatagaagttaaaggtacgtgcacaatatagca
aaactgcttcgctcataaattcgcttcgcaaaaactTCACACACTACGAT
TCTTAAAAAAGTCACTCTATGTTATCTCCAACTATCTGAGCAATCGACTT
CAGTACGTACAGATCAACGACAAGAAGTCATCCATTCTCACAGTTACCAA
TGGCGTCCCCCAAGGAAGCATACTTGGACCCATTCTCTTCAACATTTACG
TGTACGACATGGCAACAAAAACCACCGCAAAATGTGTTCAATATGCTGAT
GACACGACTATATATCGAAACCAAACGAGCTTGAAAATTGTGTCGCTGAA
ATTAACTCTGATATTAGCGTAATTGAGAAATGGTCGCTGGATTCGAACTT
GATATTTAACGCCAGAAAAACTAAATCGATGCTCTTTGCCACATCTCAAA
TGGCAAGGAGGCAtaattttgaattcgaaatcAAGTCAAATAACGAAAAT
GTGATTGAGCGTGTTCCCTTATTCAAGCTGCTAGGAATCATCTTCACCAA
AAACCTAACATGAAATGAACATGTCAAAAAAATCGTCACTAAAGCATATG
GCACGCTGAAGAGTCTATCCCTCATCAAACGATATTTACCATACCGTGTA
CGACGCCAATTGGCAGAATCTCTTGTATTGAGTAAAATAGACTATGGTAA
TACCGTAATTCACAACGCACCACAATATCTATTCAACCAATTAAAACGAG
TCCAAAATGCCACAGCTAGCTTCGTCTGGAAGAGCTACTCTCGCAAGTCT
GACGTAATAGATATGAAATGGCTACCTGTCAAAGAACGGACCGAAAACAA
TTTGGCTGAACTTGCGTGGAAATCAGTGAATATGATTGACTGGCCCAAAT
TCCTTCCTATGGAGAAATATGTGCAAGCCAAGACTCGAACGGATGTAATT
GGTGGAACTAAATTGCGTGAAACCTGTAATGTTAGTGGTTCCTTTGAATC
TGAAGCttctaaaatttttaatgaaCTACCTGTTAACTGTAGTGACTCAG
AAACTTACAAAGCATTTTgtcaagaaacaaaaaaatattttttcgacaAA
GCCCTAGCTAGGAGCTTGCAGTAGTACCTCTTCAACCAATTGTAGTCCCT
GCGTCTCTACTCGCTATTTCCTAGCTGGTGCTTTCTATGTTATATTATTT
CTTAGACATAGTTTTAGTCTAATTCTCGATTTGATTCACgcgccatttta
gttttaattaattttgaCTTCAATTCTTCCAATATCGCTACTCGTAGCCT
TGGTTCCCTAGTCTCCATTCTGATCTTTAGATTTAGCTCATCTGTTCTTA
GGTTTACttagtttgtattttcttcagtgcaTATGACTTTATCATATTTC
TAGTTctatgaagtttttttttctatttgatgtttaattattttgtgttg
gacggtgaaaaagaatgcggctattatattttgatttttcccgacatgtt
tcggactcggtctgttctcaagggaatgataTTTCTATAGAAANNNNNNN
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NNNNTTGGTTTGGTGGAAATGTTTACACGCTGGGATTGTCTCTTGTCGTG
GTCTGTATGCATTACTTCTATGGTTATTGAGTCTTTGATTGAATTGGGTC
TCGCTTTGTTTCTCGCAATgtttaattattttaaattaatttaatgcttt
acagtatgtggcccccaaaacggcgatcaaatttgaaatttctctcaaat
ctagaggaaaagagattttacaaaaatttttgctgaatgaaaacctttaa
catctctactttatttcctggaagttctttttcaaaattttcaatttcaa
caataattttcaatcgcttaaagataggtagcttttttctaatggccccc
aaaacggaggtttgaaattttagcgatttctcgagatatctttaacatat
gaaaacaaaattttgaccatagttttgaaatatgatttagagggtttggg
cataaatttatttgataaaatttttacagtatacccctggttgtcaaaat
gcaggtttgggccccccaaaacggaggtgtagttataatcaaattattaa
gcccagtggtaatagggggaaaaactatgaacatatttgtgttttccctt
aaatttacgacccgatggatgtaaaatttatgattNNNNNNNNNNNNNNN
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gcaatttttatctaattttggtgttaaaatatttcctttagacgcaaata
tgttattttgaatccgtctcaaaccagcaaaaacaggctcatttttaagt
ataatcatcattctttcaaaataaacaaaaatcgtttaattctgataaat
ctacaagtcagaatcttcatttcaatgaaaaccgccgttttgggggccgt
ctccgttttgggggccatatactgtacctCTAGCCACCAATAGTACTTGA
ACCTTAGTCTAGTCTAGCTTATAACATtatgttagtatttttttttaaat
atactcgttaattttttataacaGCACACATTGCGATGGCCTCAGCTAGC
ATACTCAGATACTTGGATTTGTTTAGGTTTTAGTCTAGCTCTATCACTAT
TCACATTTTACCCCTCATACTTCTTAATCCTAATCATTTTATTCATCATA
CTAGCCCACCGCTTCATCCCTATCTGCTTGTCCGCATACGGCCCCAATTT
TTCTTCAGTATACTACCaggttatttttcaatttttttttctagacattg
cgcacatatattatatacagaattttcaggtgaagagccaaatgtaaatt
ttggaaatgccagaaatatattTTCCCTTATAATCTCTTATTAAGACCGT
GTGACTATGTGACTCATTTGTTCTTGACTGAACAAAGATGTCAGTTCAAT
ACATTTTGCATACAGTATCCCGTTAAAGTTTGGTGTTTGCAGGATATAGA
TTATTTGTTATGAGACTTCTTAATATCCATCAACTATTTCTATCTATTTT
TTAGGAGCAACCACCGAACGAAGACAATCATAAAGAGGAGAAAAAtctca
ttttattttataaaagtcTTTGTTATTTGAATAAAGTTTCCTTGcataaa
aa Coding sequence (CDS) from alignment at sc0000378:208606..217857+ >TCONS_00021098 ID=TCONS_00021098|Name=TCONS_00021098|organism=Clytia hemisphaerica|type=CDS|length=636bp|location=Sequence derived from alignment at sc0000378:208606..217857+ (Clytia hemisphaerica)
ATGGAAGATTGTCTCAAATTTCTACAAGCTGGCTATAAAGTGAATGGTAT
CTACCGCCTGAAAGCTGCCGGATTTAACAGACCGCATGTCTTCTGTGATC
AAACAACTCTTGGTGGTGGTTGGACAACTTTTTTGAGACGAAAGGATGGA
TCTGTCAACTTCAAACAAAATTGGAAAATGTACAGGAATGGCTTCGGTGA
ATTGACCAGTGAGTTTTGGCTTGGAAATGAAATCGTCCATGGTCTGACCG
AATCATCAGTTGCACCAAAAAAGTCCGAATTGCTTATCAATATGCAAATC
AAAGGAGCAAAGAGTCCCACTTATGCAAAATATGACAACTTTGAAATTGG
AGATGAGGCAAGCAAATATATTTTGAAGTTCAGCGGTGTATCAGGCAATG
CATCTCATCTGACAGGAGACAACTCCCTAAATCACAGTAACAACAGGAGA
TTCTCCACTATTGATGCTGACAACGACGACAATTCTAGCAGTTGTAGCAA
AAGTTATGGAAGTGTTGGATGGTGGTTCGGGAATTGTGTCTATACAGTGT
TGACCGCCGACTACAAAAACATTTATTGGCACGGCTCTTCTGCGCTCGCA
AACTTCGCCGAAATGAAACTTCGCAGAAAGCTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021098-exon-sc0000378-1491911889:208606..209546 | TCONS_00021098-exon-sc0000378-1491911889:208606..209546 | Clytia hemisphaerica | exon |
| TCONS_00021098-exon-sc0000378-1510915933:208606..209546 | TCONS_00021098-exon-sc0000378-1510915933:208606..209546 | Clytia hemisphaerica | exon |
| TCONS_00021098-exon-sc0000378-1575043694:208606..209546 | TCONS_00021098-exon-sc0000378-1575043694:208606..209546 | Clytia hemisphaerica | exon |
| TCONS_00021098-exon-sc0000378-1491911889:217760..217857 | TCONS_00021098-exon-sc0000378-1491911889:217760..217857 | Clytia hemisphaerica | exon |
| TCONS_00021098-exon-sc0000378-1510915933:217760..217857 | TCONS_00021098-exon-sc0000378-1510915933:217760..217857 | Clytia hemisphaerica | exon |
| TCONS_00021098-exon-sc0000378-1575043694:217760..217857 | TCONS_00021098-exon-sc0000378-1575043694:217760..217857 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000378 | supercontig | sc0000378:208606..217857 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00021098 vs. Swiss-Prot (Human)
Match: TENA (Tenascin OS=Homo sapiens GN=TNC PE=1 SV=3) HSP 1 Score: 114.39 bits (285), Expect = 3.665e-27 Identity = 82/218 (37.61%), Postives = 114/218 (52.29%), Query Frame = 3
Query: 300 EDCLKFLQAGYKVNGIYRLKAAGFNRP--HVFCDQTTLGGGWTTFLRRKDGSVNFKQNWKMYRNGFGELTSEFWLGNEIVHGLTESSVAPKKSELLINMQIKGAKSPTYAKYDNFEIGDEASKYILKFSGVSGNASHLTGDNSLNHSNNRRFXXXXXXXXXXXXXXXXXXXXVGWWFGNCVYTVLTADYKN---------IYWHGSSALANFAEMKLR 920
+DC + + G +G+Y + G VFCD T+ GGGW FLRRK+G NF QNWK Y GFG+ EFWLG + ++ +T A + EL ++++ G + +A YD F +GD ++Y LK G SG A GD S+ + N R FST D D D ++C+ SY +W+ NC L Y + +W G FAEMKLR
Sbjct: 1982 KDCSQAMLNGDTTSGLYTIYLNGDKAEALEVFCDMTSDGGGWIVFLRRKNGRENFYQNWKAYAAGFGDRREEFWLGLDNLNKIT----AQGQYELRVDLRDHGETA--FAVYDKFSVGDAKTRYKLKVEGYSGTA----GD-SMAYHNGRSFSTFDKDTDSAITNCALSYKG-AFWYRNCHRVNLMGRYGDNNHSQGVNWFHWKGHEHSIQFAEMKLR 2187
The following BLAST results are available for this feature:
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