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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021075 ID=TCONS_00021075|Name=TCONS_00021075|organism=Clytia hemisphaerica|type=transcript|length=755bp
CTCTGCCGGGAGAATGGCCATGGCAGGCGAACACGAGCGTGGAAAAGTTG
ACACTGGAGAACAAACGCCAAAAGTAAAACGAATAATCAACCATGAAATG
TATCGACTCGCACCAGGAACCAATAGTTTTGACTTTGCacttttggaact
ggaaacaGAAGCTCAAATAACAGATAACGTTCGCACTATTTGTATTCCAA
AGAAGCATAGCGGGACTGATTTTGATAATCAAATATGTGACATCACAGGA
TGGGGAACAACGTCAGAAGGTGGCAGTGGCGCCAACATCTTACAAGAAGC
GAGTGTTAGAGTGTACCCTCAACCAGAATGTGTTGGAAATTACGGTAGTC
GAATTGGTGACAGTATGTTTTGTGCCGGATATCGTGATGGTGGAGTAGAC
GCGTGTCAAGGAGACAGTGGTGGTCCCTTACAATGCAAAGATGGAAACAA
ATGGGTTCTCTGGGGAATAACATCTTGGGGTATTGGATGTGCCAGACCTG
ATAGAGCTGGAGTCTATAGCAAGGTTACACAAGTTGTGGATTGGATTGAA
GAGAAAACTGGAGTtactttttaaaacattttgtttatttcataAGGTTT
tattaaacgcttttttataagaatatcagggtgagaatTGACTAAATGTT
AAGAATGTCAAAAGACTGTGTTGAGAATATCTCACCCTCAGATTCTGAAT
ATTCCTAAAGATACTTCACTCTcacccaaaaaaaaacataagtaTTATAA
AAGTG Run BLAST on NCBI transcript from alignment at sc0000377:216529..224193- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021075 ID=TCONS_00021075|Name=TCONS_00021075|organism=Clytia hemisphaerica|type=transcript|length=7665bp|location=Sequence derived from alignment at sc0000377:216529..224193- (Clytia hemisphaerica)
CTCTGCCGGGAGAATGGCCATGGCAGGTTCGAAACATTGTTTTCCAAATA
AATTTATAAAAGTGGACTCTCTATAACTCGAACCTCTAATACTCGAATGT
CTCCTTAACCCGAACAAGTTTTTTTGTTCATTCAGTTAATAATGCCTAAT
AAACCTATACTCTTTATTTCAAAATCCCCTTAACTCGAATGAATTTGTGT
TCCCCGTGCGTGTTCGAGTTATAGAGATTCTGCATTAAAGCTCTAGCATG
AAACCCGTCACAGTGACAACCTAAAAACCTTTTTCTCTAGACTCTACCCC
ATACATACACCTATAAACTCCTAAAACGTGAAAAGACTGGGTTAGAATTT
CCCTAGTAAATTTTTGCACAAAAAGTGCTGTCGTCAACAGAAACATCATT
TCAAGAGTTTCTCTCTCAATTTTTATTTTCTTTACTTCATGAGGAACCTC
TGTGCAAAATTTCAGAGCTCTATCACAGTTTGAAGTATTGTCCCTTTTAT
ATGTGATAATCCGCCCTACTATAGAAGGATTGACGTCAAAATGTCAGGAG
TCATTGCATTGACTTTTCATAAAAAAGGAATTTTGACATTAATCTCTCCT
GGCGGCTCTAACCCAGCTTTCTCATGCTTTAGGCGTATTAAGGAATACAG
TTGTGTAAAACATTTTCCATGCCTTATATACTGAGGCAGTAATCAACTTT
TTTACATTTAGCCATAGTGTATTCACCAATAGTAGCTTGGCGGCACCCAT
TCCCATTTTTATATCGCAACAAACATTACCCTATATATTTTGCAATCGCT
TTGCTCGCCAAACGTTTCAACAAACTTTTTTCTTAGTGCAGTCAAAATCT
TTAATTACTTCAATTTGCAACCCCATTTTTGGTCGCACCAAGATAAACTT
GAGACTCTTTCGTCTTGGAAAATTTTATCAAAGAGATGGGAAATTTTAAT
CGTTCTTCTTCTTTGTACTTCTTCAGGCATTTTATATAATTAGAAAAGGA
ANTTAAAACGTGAAAAGACTGGGTTAGAATTTCCCTAGTAAATTTTTGCA
CAAAAAGTGCTGTCGTCAACAGAAACATCATTTTCAAGAGTTTCTCTCTC
AATTTTTATTTTCTTTACTTCATGAGGAACCTCTGTGCAAAATTTCAGAG
CTCTATCACAATTTGAAGTATCGTCCCTTTTATATGTGATAATCCGCCCT
ACTATAGAAGGATTGACGTCAAATTTCAGGAGTCATTGCATTGACTTCTC
ATCAAGAAAGGAATTTTGACATTAATCTCTCCTGGTGGCTCTAACCCAGC
TTTCTCACGCTTTAGGCGTATTAAGGAATACAGTTGTGTAAAACATTTTC
CATGCCTTATATACTGAGGCAGTAATCAACTTTTTTAAATGGAAATATTG
GCCTTAGTGTATTCACCAATAGTAGCTTGGCGGCACCCATTCCCATTTTT
ATATCGCAACAAACATTACCCTATATATTTCGCAATCGCTTTGCTCGCCA
AACGTTTCAACAAACTTTTTTCTTAGTGCAGTCAAAATCTTTAATTACTT
CAATTTGCAACCCCATTTTTGGTCGCACCAAGATAAACTTGAGACTCTTT
CGTCTTGGAAAATTTTATCAAAGAGATGGGAAATTTTAATCGTTCTTCTT
CTTTGTACTTCTTCAGGCATTTTATATAATTAGAAAAGGAACCAGAGCCT
TTTCCTGTGGAGGCGTTTTGATCCACAAGAAATGGGTGTTAACGGCCGCC
CACTGTACAGTAGGAGACGGTGCTTTTGTTAGTAAACTTTATCTGGGTAA
GTTATACCAGTTATTACATTCTCTTTATATGTTTTTACCGGATGTATCGT
TCGTTCTACCAATTTGAGAGGCTGAAATATAAGTTAAGAAGGAGAGTCGA
TCGCCATACTACCCTTATACTCTTTCTGGGAGTCATCATAGTGAATTTTG
TTGCCCATTGGTTGCGTCATAGTACATGGTAGCGTGAAGGATTAGATGAC
GGACTGCAATGGACTTGGCTCGAATCACCTCCGATGGCTAACTGCAACTT
ACTTACTTAATTTCCTGGATCTATTTGAAACTTTTTGTCTTGTCTTTCTA
GGCGAACACGAGCGTGGAAAAGTTGACACTGGAGAACAAACGCCAAAAGT
AAAACGAATAATCAACCATGAAATGTATCGACTCGCACCAGGAACCAATA
GTTTTGACTTTGCACTTTTGGAACTGGAAACAGAAGCTCAAATAACAGAT
AACGTTCGCACTATTTGTATTCCAAAGAAGCATAGCGGGACTGATTTTGA
TAATCAAATATGTGACATCACAGGATGGGGAACAACGTCAGAAGGTGGCA
GTGGCGCCAACGTAAGTTGTTTTGGGTTGAATATTTTTCATACGTGGTAT
ATGCATATTGACACTTCCTGATGCATATTTCCATAACGGGACGCCATCAC
TTTAAAAAAAATTTTATCAAACTCGAACCCAGTTACTTAGTTCGCTCTTT
TATGATTCTGATACTGCTCACGAAAAGATTGCATTGCGATTTTATCACCT
CCATTAAATTGCCTTTAAAACATAAGTTTTCAGCAAAAAGAATACATGAT
ATTTTACGCCCATAATCGCACGAAGAGTTATTTTTTTTTCTTTGGCGCGC
CTTCAAAGAGAGCAATTAATTGTTAATTGCTTCCTGTAGAGAGCAATTAG
GCAATGAGGCTAATCACTCGTAATTTTTTTNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGGCATTTTA
TATAATTAGAAAAGGAACCAGAGCCTTTTCTTGTGGAGGTGTTTTGATCC
ACAAGAAATGGGTGTTAACGGCCGCCCACTGTACAGTAGGAGACGGTGCT
TTTGTTAGTAAACTTTATCTGGGTAAGTTATACCAGTTATTACATTCTCT
TTATATGTTTTTACCGGATGTATCGTTCGTTCTACCAATTTGAGAGGCTG
AAATATAAGTTAAGAAGGAGAGTCGATCGCCATACTACCCTTATACTCTT
TCTGGGAGTCATCATAGTGAATTTTGTTGCCCATTGGTTGCGTCATAGTA
CATGGTAGCGTGAAGGATTAGATGACGGACTGCAATGGACTTGGCTCGAA
TCACCTCCGATGGCTAACCGCAACTTACTTACTTAATTTCCTGGATCTAT
TTGAAACTTTTTGTCTTGTCTTTCTAGGCGAACACGAGCGTGGAAAAGTT
GACACTGGAGAACAAACGCCAAAAGTAAAACGAATAATCAACCATGAAAT
GTATCGACTCGCACCAGGAACCAATAGTTTTGACTTTGCACTTTTGGAAC
TGGAAACAGAAGCTCAAATAACAGATAATGTTCGCACTATTTGTATTCCA
AAGAAGCATAGCGGGACTGATTTTGATAATCAAATATGTGACATCACAGG
ATGGGGAACAACGTCAGAAGGTGGCAGTGGCGCCAACGTAAGTTGTTTTG
GGTTGAATATTTTTCATACGTGGTATATGCATATTGACACCTCCTGATGC
ATATTTCCATAACGGGACGCCATCACTTTAAAAAAAAATTTATCAAACTC
GAACCCAGTTACTTAGTTCGCTCTTTTATGATTCTGATACTGCTCACGAA
AAGATTGCATTGCGATTTTATCACCTCCATTAAATTGCCCTTAAAACGTA
AGTTTTCAGCAAAAAGAATACATGATATTTTACGCCCATAATCGCACGAA
CAGTTATTTTTTTTTCTTTGGCGCGCCTTCAAAGAGAGCAATTAATCGTT
AATTGCTTCCTGTAGAGAGCAATTAGGCAATGAGGCTAATCACTCGTAAT
TTTTTTACTTCAAATTTTCCTCGACCTTTCGGACTCAAACAAAATTAATA
ACAAAAAAAATCACTCGTGCAATTTTCGAATTGTACGAGTTATTATGTGA
TTACGAGCTAATCGTACAATTTTTTCACTACTTTTCCCCGTCAGGAAAGT
AAATTACAATGAAAGTTTTACATTTTTCTCTCGTATTGCACTCTTTATCA
ATTGATTACATATACTAATCTGATTCTAACATTTCCCGAGTGGATTTAAT
TTTGTGACTCAGCAATCTCACGCACGCTATATTTTCGCGAAAAATTCGAG
AAAAAATTATCAGATTAAACAATCGTTTCTACGTCTTTTCAAACCTTTCC
CTAATATAAGAAGCTAATTCCTTGAATAAAGTTATTTTTGCCACTAGTGA
AGTATAATTTTGGAATAGTAGGATGGGGGTAAAATTGTGAAAATCACATG
CACAGGAAAAATGTTTTGATTCCCTAGGCTATGAAAATGCATACTTCCAG
ATCTGGAAATCTGGATTTTTCCCTAACCAATCCCTAGCTAGGGAAGATGC
AACAGTTCCCTAGTTATGGAAATAGAATTTCCCTATTATTGAAAAGTGCT
TTTCTCGAGCGAACCCCAATAAAACCCCATAGAGTTACCCATATTCACGA
ATTAAATCCTGATTTATAGAAAGCTGGTAAAATAATTAAATGTATTCGAT
CATTCTGTGAGCATTGGTTCGATAGCTCTCATTCGTTCTGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAATTCTGA
ATGGGCAACTAGAATGTTAAAAATATTAGTTTTCCACATGTGGAAATCCG
TTTTCACTAACACATTGGTAATACACTTCCAGCATGGGAAAATAGGATTC
CCTAGTTTCCTTACTTTCCCGAACTTAAAATTCTAGACTAATGTGATCGA
ACAAAAAACCACATCTGAAAATGAACAATCCCTAGGCTAGGGAATCAATA
ATTTTTTTCCTGTGATGATCAACGTTAACTACACTTTCAATTGTAGATCT
TACAAGAAGCGAGTGTTAGAGTGTACCCTCAACCAGAATGTGTTGGAAAT
TACGGTAGTCGAATTGGTGACAGTATGTTTTGTGCCGGATATCGTGATGG
TGGAGTAGACGCGTGTCAAGGAGACAGTGGTGGTCCCTTACAATGCAAAG
ATGGAAACAAATGGGTTCTCTGGGGAATAACATCTTGGGGTATTGGATGT
GCCAGACCTGATAGAGCTGGAGTCTATAGCAAGGTTACACAAGTTGTGGA
TTGGATTGAAGAGAAAACTGGAGTTACTTTTTAAAACATTTTGTTTATTT
CATAAGGTTTTATTAAACGCTTTTTTATAAGAATATCAGGGTGAGAATTG
ACTAAATGTTAAGAATGTCAAAAGACTGTGTTGAGAATATCTCACCCTCA
GATTCTGAATATTCCTAAAGATACTTCACTCTCACCCAAAAAAAAACATA
AGTATTATAAAAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021075-exon-sc0000377-1575043694:224168..224193 | TCONS_00021075-exon-sc0000377-1575043694:224168..224193 | Clytia hemisphaerica | exon |
| TCONS_00021075-exon-sc0000377-1575043694:221833..222092 | TCONS_00021075-exon-sc0000377-1575043694:221833..222092 | Clytia hemisphaerica | exon |
| TCONS_00021075-exon-sc0000377-1575043694:216529..216997 | TCONS_00021075-exon-sc0000377-1575043694:216529..216997 | Clytia hemisphaerica | exon |
| TCONS_00021075-exon-sc0000377-1510915933:224168..224193 | TCONS_00021075-exon-sc0000377-1510915933:224168..224193 | Clytia hemisphaerica | exon |
| TCONS_00021075-exon-sc0000377-1510915933:221833..222092 | TCONS_00021075-exon-sc0000377-1510915933:221833..222092 | Clytia hemisphaerica | exon |
| TCONS_00021075-exon-sc0000377-1510915933:216529..216997 | TCONS_00021075-exon-sc0000377-1510915933:216529..216997 | Clytia hemisphaerica | exon |
| TCONS_00021075-exon-sc0000377-1491911889:224168..224193 | TCONS_00021075-exon-sc0000377-1491911889:224168..224193 | Clytia hemisphaerica | exon |
| TCONS_00021075-exon-sc0000377-1491911889:221833..222092 | TCONS_00021075-exon-sc0000377-1491911889:221833..222092 | Clytia hemisphaerica | exon |
| TCONS_00021075-exon-sc0000377-1491911889:216529..216997 | TCONS_00021075-exon-sc0000377-1491911889:216529..216997 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000377 | supercontig | sc0000377:216529..224193 - |
Blast
BLAST of TCONS_00021075 vs. Swiss-Prot (Human)
Match: FA11 (Coagulation factor XI OS=Homo sapiens GN=F11 PE=1 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 1.183e-34 Identity = 77/163 (47.24%), Postives = 98/163 (60.12%), Query Frame = 2
Query: 74 VKRIINHEMYRLAPGTNSFDFALLELETEAQITDNVRTICIPKKHSGTDFDNQICDIXXXXXXXXXXXXANILQEASVRVYPQPECVGNY-GSRIGDSMFCAGYRDGGVDACQGDSGGPLQCKDGNKWVLWGITSWGIGCARPDRAGVYSKVTQVVDWIEEKT 559
V+ II H+ Y++A + +D ALL+LET TD+ R IC+P K + C +TGWG N LQ+A + + EC Y G +I M CAGYR+GG DAC+GDSGGPL CK W L GITSWG GCA+ +R GVY+ V + VDWI EKT
Sbjct: 463 VQEIIIHDQYKMAE--SGYDIALLKLETTVNYTDSQRPICLPSK-GDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKT 622
The following BLAST results are available for this feature:
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