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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021049 ID=TCONS_00021049|Name=TCONS_00021049|organism=Clytia hemisphaerica|type=transcript|length=1072bp
attcaaaataaaacattatcATCGATAACAcgccaaagaaagaaaaagcc
aATATGCTCGTTCATAAATTTAAAAGTAAGAAACCAACAGCGTACAGCCA
AAGCAAATTAAATCCATTCTTCAATCAAGATGAACTCGGTGAGCTTACAC
ATACGCACGACACTTTGGAAGACGATCGTTACGTCGACGAGAAATATCGG
GATTTTCATCGGCGCCGACAATCAGAGAAAGTCTTAAATGTTATTCGGTC
GGTACTCGGTGATAACAATGAATCTTTACATAAGCTGACGGCAGCACAAA
ATGTAAACGAGACCTCAAGGTCTGTCTTGAATTCAAGTAAAAAGGAATCA
CCAAATGTGCCAGATGAGGATTCCTTGACTGGATTTATAACACCTAAAAA
GGAATCACCTCAGACAAATTCGGATACAGATTCTATTGCAACTCTTGCAG
CTGGTTTTTCCAAGAAGGTTTCAACTAAGGAAGATGCACAACCATATGGA
AAACAGTTTGAAGCAACTGGAACTACAAAAGattcTACCATTGAATCTTC
ACCACAACTAAACGGCGACGAAAAAGACAATCTACAAAAAATACAGCAAG
AAAACTTTAACTTAAAAAGTCACTTATGTCTCGTCTACGATTATCTCAAA
ACGATAGAAGAATCACGACCAAATATCGGAGAAAACCAACAAACCCAAGG
ATTGGGAACTAGAGCCGACTCCTTCTTACCAAAAACCTCATGTGGCAGCT
GTGATAAATTACGTCAGCtagtgacgtcattaaaaattGATTGTCTTCAA
GAACGAACGGAGAAAGAAATGTTGAGATTCAAGATTCTTGAATTGAACAA
TTACTACAGAGGCACTTTAGAGAATTATGAGGCTTTGGCAAAGAAGGTTG
AGGATATGGAGATGTCGTGTAACAAGAGACTTAACAAAGCGGAGGATAAT
ATGCACCGTATACAATGTACTAAGAAGAAGTCCTTTTTCCGACGTAAAAA
GTAAAGTTTACGGATAAAGAATACCGTTAATTTGTTGtattattcttaaa
atttttgataatgaaaaaaaaa Run BLAST on NCBI protein sequence of TCONS_00021049-protein >TCONS_00021049-protein ID=TCONS_00021049-protein|Name=TCONS_00021049-protein|organism=Clytia hemisphaerica|type=polypeptide|length=316bp
MLVHKFKSKKPTAYSQSKLNPFFNQDELGELTHTHDTLEDDRYVDEKYRD
FHRRRQSEKVLNVIRSVLGDNNESLHKLTAAQNVNETSRSVLNSSKKESP
NVPDEDSLTGFITPKKESPQTNSDTDSIATLAAGFSKKVSTKEDAQPYGK
QFEATGTTKDSTIESSPQLNGDEKDNLQKIQQENFNLKSHLCLVYDYLKT
IEESRPNIGENQQTQGLGTRADSFLPKTSCGSCDKLRQLVTSLKIDCLQE
RTEKEMLRFKILELNNYYRGTLENYEALAKKVEDMEMSCNKRLNKAEDNM
HRIQCTKKKSFFRRKK Run BLAST on NCBI transcript from alignment at sc0000377:198606..200298+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021049 ID=TCONS_00021049|Name=TCONS_00021049|organism=Clytia hemisphaerica|type=transcript|length=1693bp|location=Sequence derived from alignment at sc0000377:198606..200298+ (Clytia hemisphaerica)
attcaaaataaaacattatcATCGATAACAcgccaaagaaagaaaaagcc
aATATGCTCGTTCATAAATTTAAAAGTAAGAAACCAACAGCGTACAGCCA
AAGCAAATTAAATCCATTCTTCAATCAAGATGAACTCGGTGAGCTTACAC
ATACGCACGACACTTTGGAAGACGATCGTTACGTCGACGAGAAATATCGG
GATTTTCATCGGCGCCGACAATCAGAGAAAGTCTTAAATGTTATTCGGTC
GGTACTCGGTGATAACAATGAATCTTTACATAAGCTGACGGCAGCACAAA
ATGTAAACGAGACCTCAAGGTCTGTCTTGAATTCAAGTAAAAAGGAATCA
CCAAATGTGCCAGATGAGGATTCCTTGACTGGATTTATAACACCTAAAAA
GGAATCACCTCAGACAAATTCGGATACAGATTCTATTGCAACTCTTGCAG
CTGGTTTTTCCAAGAAGGTTTCAACTAAGGAAGATGCACAACCATATGGA
AAACAGTTTGAAGCAACTGGAACTACAAAAGGTGTGTAAACTTTTTATCC
AACTGTACTAAAGATTGGATTTTATTTAATATCCACTATCCAATTTTGTG
TAAAGAGCAGAGAGAGGGTTTCTTTTGGAGAACGAATTATAGATGCGCGT
GAATCTTCGAAGTAACCTGATAGTAGGAAAAATTTCAATGCCAAGAAATC
TAATGGCGCCATATCATGGGAAATAATATGCTCGCCTACACGATTTGCAG
ATTTCCGGATTTTGAGTAATTATCTGATTGATAAGTGCAGGAAAATTACT
CTGAACAAAAATTCTAGTTTGAATGGTATTCACGTCGAAATTTCACTCGC
TTAAAATTGTTTGTGCTGCAGTCAACGCTCTTCTAACTTTCCCCCAGTTT
GATCTTAAAGTGaagataatgttttttaaaaataataacatttaaAATCT
TTTCATAGCCGAGGTTTTGACGTAAAATTACGATACCGACCATATTTAGG
ATTCCAAAATACTGAGAATGCCTTTTGTAAGGTTTTtgagatttcaaaat
aaaaaagatcgATTTCCGCAATATCAAAAAATCATAGACCGACCATAGGT
TATGCTTTAGAGAAAGCAAAACTGTGATGCTCGAActactttttgttttt
agattcTACCATTGAATCTTCACCACAACTAAACGGCGACGAAAAAGACA
ATCTACAAAAAATACAGCAAGAAAACTTTAACTTAAAAAGTCACTTATGT
CTCGTCTACGATTATCTCAAAACGATAGAAGAATCACGACCAAATATCGG
AGAAAACCAACAAACCCAAGGATTGGGAACTAGAGCCGACTCCTTCTTAC
CAAAAACCTCATGTGGCAGCTGTGATAAATTACGTCAGCtagtgacgtca
ttaaaaattGATTGTCTTCAAGAACGAACGGAGAAAGAAATGTTGAGATT
CAAGATTCTTGAATTGAACAATTACTACAGAGGCACTTTAGAGAATTATG
AGGCTTTGGCAAAGAAGGTTGAGGATATGGAGATGTCGTGTAACAAGAGA
CTTAACAAAGCGGAGGATAATATGCACCGTATACAATGTACTAAGAAGAA
GTCCTTTTTCCGACGTAAAAAGTAAAGTTTACGGATAAAGAATACCGTTA
ATTTGTTGtattattcttaaaatttttgataatgaaaaaaaaa Coding sequence (CDS) from alignment at sc0000377:198606..200298+ >TCONS_00021049 ID=TCONS_00021049|Name=TCONS_00021049|organism=Clytia hemisphaerica|type=CDS|length=1902bp|location=Sequence derived from alignment at sc0000377:198606..200298+ (Clytia hemisphaerica)
ATGCTCGTTCATAAATTTAAAAGTAAGAAACCAACAGCGTACAGCCAAAG
CAAATTAAATCCATTCTTCAATCAAGATGAACTCGGTGAGCTTACACATA
CGCACGACACTTTGGAAGACGATCGTTACGTCGACGAGAAATATCGGGAT
TTTCATCGGCGCCGACAATCAGAGAAAGTCTTAAATGTTATTCGGTCGGT
ACTCGGTGATAACAATGAATCTTTACATAAGCTGACGGCAGCACAAAATG
TAAACGAGACCTCAAGGTCTGTCTTGAATTCAAGTAAAAAGGAATCACCA
AATGTGCCAGATGAGGATTCCTTGACTGGATTTATAACACCTAAAAAGGA
ATCACCTCAGACAAATTCGGATACAGATTCTATTGCAACTCTTGCAGCTG
GTTTTTCCAAGAAGGTTTCAACTAAGGAAGATGCACAACCATATGGAAAA
CAGTTTGAAGCAACTGGAACTACAAAAGattcTACCATTGAATCTTCACC
ACAACTAAACGGCGACGAAAAAGACAATCTACAAAAAATACAGCAAGAAA
ACTTTAACTTAAAAAGTCACTTATGTCTCGTCTACGATTATCTCAAAACG
ATAGAAGAATCACGACCAAATATCGGAGAAAACCAACAAACCCAAGGATT
GGGAACTAGAGCCGACTCCTTCTTACCAAAAACCTCATGTGGCAGCTGTG
ATAAATTACGTCAGCtagtgacgtcattaaaaattGATTGTCTTCAAGAA
CGAACGGAGAAAGAAATGTTGAGATTCAAGATTCTTGAATTGAACAATTA
CTACAGAGGCACTTTAGAGAATTATGAGGCTTTGGCAAAGAAGGTTGAGG
ATATGGAGATGTCGTGTAACAAGAGACTTAACAAAGCGGAGGATAATATG
CACCGTATACAATGTACTAAGAAGAAGTCCTTTTTCCGACGTAAAAAGTA
AATGCTCGTTCATAAATTTAAAAGTAAGAAACCAACAGCGTACAGCCAAA
GCAAATTAAATCCATTCTTCAATCAAGATGAACTCGGTGAGCTTACACAT
ACGCACGACACTTTGGAAGACGATCGTTACGTCGACGAGAAATATCGGGA
TTTTCATCGGCGCCGACAATCAGAGAAAGTCTTAAATGTTATTCGGTCGG
TACTCGGTGATAACAATGAATCTTTACATAAGCTGACGGCAGCACAAAAT
GTAAACGAGACCTCAAGGTCTGTCTTGAATTCAAGTAAAAAGGAATCACC
AAATGTGCCAGATGAGGATTCCTTGACTGGATTTATAACACCTAAAAAGG
AATCACCTCAGACAAATTCGGATACAGATTCTATTGCAACTCTTGCAGCT
GGTTTTTCCAAGAAGGTTTCAACTAAGGAAGATGCACAACCATATGGAAA
ACAGTTTGAAGCAACTGGAACTACAAAAGattcTACCATTGAATCTTCAC
CACAACTAAACGGCGACGAAAAAGACAATCTACAAAAAATACAGCAAGAA
AACTTTAACTTAAAAAGTCACTTATGTCTCGTCTACGATTATCTCAAAAC
GATAGAAGAATCACGACCAAATATCGGAGAAAACCAACAAACCCAAGGAT
TGGGAACTAGAGCCGACTCCTTCTTACCAAAAACCTCATGTGGCAGCTGT
GATAAATTACGTCAGCtagtgacgtcattaaaaattGATTGTCTTCAAGA
ACGAACGGAGAAAGAAATGTTGAGATTCAAGATTCTTGAATTGAACAATT
ACTACAGAGGCACTTTAGAGAATTATGAGGCTTTGGCAAAGAAGGTTGAG
GATATGGAGATGTCGTGTAACAAGAGACTTAACAAAGCGGAGGATAATAT
GCACCGTATACAATGTACTAAGAAGAAGTCCTTTTTCCGACGTAAAAAGT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021049-exon-sc0000377-1491911889:198606..199136 | TCONS_00021049-exon-sc0000377-1491911889:198606..199136 | Clytia hemisphaerica | exon |
| TCONS_00021049-exon-sc0000377-1510915933:198606..199136 | TCONS_00021049-exon-sc0000377-1510915933:198606..199136 | Clytia hemisphaerica | exon |
| TCONS_00021049-exon-sc0000377-1575043694:198606..199136 | TCONS_00021049-exon-sc0000377-1575043694:198606..199136 | Clytia hemisphaerica | exon |
| TCONS_00021049-exon-sc0000377-1491911889:199758..200298 | TCONS_00021049-exon-sc0000377-1491911889:199758..200298 | Clytia hemisphaerica | exon |
| TCONS_00021049-exon-sc0000377-1510915933:199758..200298 | TCONS_00021049-exon-sc0000377-1510915933:199758..200298 | Clytia hemisphaerica | exon |
| TCONS_00021049-exon-sc0000377-1575043694:199758..200298 | TCONS_00021049-exon-sc0000377-1575043694:199758..200298 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000377 | supercontig | sc0000377:198606..200298 + |
Blast
The following BLAST results are available for this feature:
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