TCONS_00021000 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021000
Unique NameTCONS_00021000
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1505

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021000 ID=TCONS_00021000|Name=TCONS_00021000|organism=Clytia hemisphaerica|type=transcript|length=1505bp
TTATCCTGCAGTTTATTTTCTAGATGTtgcaaaagaaaacaattaagGGA
TTATTATGgtgttttttgataaaaaatgcaATGGATTTCGAATTCATTTC
CAACATTCTTCATTGTGTTGGTCATTGTAGTTGATGTGTCGATTGCAAAG
TCTCCCATTATACTGAtccCAGGAACAGGTGGAAACCGTCTGGAAGCAAA
ATTAACAGGCAAGAAATGGAAACCAGCCTGGTATTGTCTATCATCCACAA
TCACTTTCTATACTCTATGGTTTGATTTGACGGCACCCTTCCCTGGCTTC
ACCAAGTGCTGGGCTGATAATATCAGGTTGGAATGGGATTTGGAGAAGAT
GACGACAAGCGATGTTCAAGGAGTCGAAACTAAAGTTCCTGAGTTTGGGC
GGACAGAGAGCGTTGAGTACCTCGATAGTGTTGGTGTGATTCCTTACATG
AAATCACTGGTCGAATATTTTGTTACCATGGGCTACGAGCGAAACAAAGA
AATAAGAGCAGCCCCATATGACTTTAGGTACTCTCCAGATACGACACCAC
ACAATTATTTCAATGAGCTGAAAGATTTGACCGAAGAAACATACGTTCTT
AACAACAACGAAGCGGTAACCCTAATCACTCACAGCTATGGTGGATTGAT
GACGTTATATTTCCTCAATAAAGTATCGAAATCatggaaaaagaaattca
tCAAACAGTGGATTGCTTTAGCAGCCCCGTTCGGTGGTAGTATTTTGGAG
ACGCTCGTCTATGCATCCGGCTTCGTGGATAAGAAATTAGAACGAGTGAT
CGAACCTTTAGACGTACGCGCTGGTCAAAGATCTTTTACAAGTAATTTAG
TTTTATTGCCAAGTCGGTTTGCCTGGAGTGACGATTACGTGTTTGCACAA
ATCAGTAATAAAACATTCACCATATCAAATATTAGTGGATTTCTAGACCA
AGTTGGCTTTCACGAAGGAACGCTAATGATGGAGCAAATAGTCAATAATA
CTGAACTTATGAAAATGTCACCTGGTGTTCCAATATCATGTTTCTATGGT
AACAAACTTAACTCTACTGTTAACCGGTTAATTTTTGACAAATCCGGATT
TCCCGATCATCCGATCGGGTTTGAATATGGGCATGGAGATGGTTCGGTCA
ATTTGGAATCTTTAGTTTTATGTGAAATGTTTGCAGACTTGCAGAAAGAG
AATGTGACCATTCATGAGTTACCGGATGTAGGTCATCTAGATATTCTTGA
AAATGAAGAACTCTTTTCAACAATCGAATCCATGGTCATCTGAATAATTT
TGCATTCAAAAGACAATGTCCCGGCAAACAACATAAACATTTTACCATTA
AAAAGGGTTTGAATCAATCCCATTCTGATGATTTGCATCCAAGTGTATTA
AATATAAATAGGCCAAACAAACAATTGTTATTTTTGAAGGGTTTATGTAA
ATTTTTAGCGTCTGTTcgataaaaaaatcataacaatgtGAATAGTTTTA
AGAGA
Run BLAST on NCBI

protein sequence of TCONS_00021000-protein

>TCONS_00021000-protein ID=TCONS_00021000-protein|Name=TCONS_00021000-protein|organism=Clytia hemisphaerica|type=polypeptide|length=405bp
MQWISNSFPTFFIVLVIVVDVSIAKSPIILIPGTGGNRLEAKLTGKKWKP
AWYCLSSTITFYTLWFDLTAPFPGFTKCWADNIRLEWDLEKMTTSDVQGV
ETKVPEFGRTESVEYLDSVGVIPYMKSLVEYFVTMGYERNKEIRAAPYDF
RYSPDTTPHNYFNELKDLTEETYVLNNNEAVTLITHSYGGLMTLYFLNKV
SKSWKKKFIKQWIALAAPFGGSILETLVYASGFVDKKLERVIEPLDVRAG
QRSFTSNLVLLPSRFAWSDDYVFAQISNKTFTISNISGFLDQVGFHEGTL
MMEQIVNNTELMKMSPGVPISCFYGNKLNSTVNRLIFDKSGFPDHPIGFE
YGHGDGSVNLESLVLCEMFADLQKENVTIHELPDVGHLDILENEELFSTI
ESMVI
Run BLAST on NCBI

transcript from alignment at sc0000376:80756..88642-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021000 ID=TCONS_00021000|Name=TCONS_00021000|organism=Clytia hemisphaerica|type=transcript|length=7887bp|location=Sequence derived from alignment at sc0000376:80756..88642- (Clytia hemisphaerica)
TTATCCTGCAGTTTATTTTCTAGATGTTGCAAAAGAAAACAATTAAGGGA
TTATTATGGTGTTTTTTGATAAAAAATGCAATGGATTTCGAATTCATTTC
CAACATTCTTCATTGTGTTGGTCATTGTAGTTGATGTGTCGATTGCAAAG
TCTCCCATTATACTGAGTAAGTCTTCTTTGAGTAAAATGTCTTCTCTTTT
ATCTTGTAGATAATTTTTTTCAATTCATGATATTCATGACGTAATGTATT
TTTACGGAAACAACCAGTTTTCGCCAACAAAAAATGGGGTCTTTCCGTAG
AAAACACAACGTCATGAATAACCATCCAAAAAAATAGTTGGAAATCAGTA
TGCTAGACTACCAGCATTGGAATTCAAACTTTATACCAGAGTGGTTAAAT
TGCGTGATAATGATTTACTAATTTTTTTAATTTTAGTCCCAGGAACAGGT
GGAAACCGTCTGGAAGCAAAATTAACAGGCAAGAAATGGAAACCAGCCTG
GTATTGTCTATCATCCACAATCACTTTCTATACTCTATGGTTTGATTTGA
CGGCACCCTTCCCTGGCTTCACCAAGTGCTGGGCTGATAATATCAGGTAT
TATCAGATATTCAACAAAACAATACCCAACCAGAGAAAGATTTCACTTGT
TCAATTTTATCTGTACACACTCGTAAAATTTTGAATCGTTAAATGAGCTT
CTTTTTGCTACACCATCACAAACCCCCAGTGGGCTTTTATAAATCAGTTT
AACAAAAAAAATATTTTTTAACGCTATGAATTCAAGAAACATACAAAAAA
ACTGATAAACTAGCAATGGTGACGAGTAAATAGTAGACAACCCTTAAATA
TTCAAACAACCCTTGTCCCAGTGACCCGACGAGAAATTATTGTCCAGCAA
GGATAACACGGAATAACTAAATACCAATGGGGATTAGAAATCGCATGGAT
GTGATTTTTTGTTTACAGCTCAGATATCAAGTAGGATTCTCAAATTTTAC
AGTAACTTCCAATTGGGAATGACAGTGAGCTTAGTGAGTTGCGATGTGGA
AAACATTTCATAGGATAATTTCTCGAGCTATTTTGACAGTGGGAAAGGGG
TTCTACCATGGTCTGTGGTACAAGGGTATATTGAATTATCACCAAAAGAA
ATTTTACATTCTTATTTGAAGGTTGGAATGGGATTTGGAGAAGATGACGA
CAAGCGATGTTCAAGGAGTCGAAACTAAAGTTCCTGAGTTTGGGCGGACA
GAGAGCGTTGAGTACCTCGATAGTGTTGGTGTGATTCCTTACATGAAATC
ACTGGTCGAATATTTTGTTACCATGGGCTACGAGCGAAACAAAGAAATAA
GAGCAGCCCCATATGACTTTAGGTACTCTCCAGGTGATTTGAAATTCATT
TGTTGTTCTCGATTTCTTATTTCTTATTTTAGAAAATTTATACTTCTTTG
GAGCGTGAATTTCTTATCATCAAATTTCTACTTGTTTAAAGTAACATTTT
GAGGTAGAATCTGGTCATTTCGTGTCTTGTTTTAAGAAAACTTTCACTTA
TTCTAAGTAACATTTTGAGGTAGAATCTGGTCATTTCGTGTCTTGTTTTA
AGAAAACTTTCACTTATTCTAAGTAACGATTTGAGGAAGAATCTGGTCAT
TTCGTGTCTTGGTTTAAGAAAACTTTCACTTATTTTCACTTATTCTAAGT
AACGATTTGAGGTAGAATCTGGTCATTTCGTGTCTTGTTTTAAGAAAACT
TTCATTAATTCTAAGTAACGATTTGAGGTAGAATCTGGTCAATTCGTGTC
TTGTTTTAAGAAAACTTTCACTTATTCTAAGTAACGATTTGAGGTAGAAT
CTGGTCATTTTGTGTCTTGTTTTAAGAAAACTTTCACTTATTCTAAGTAA
CGATTTGAGGTAGAATCTGGTCATTTTGTGTCTTGTTGTAAGAAAACTTT
CACTTATTCTAAGTAACGATTTGAGGTAGAATCTGGTCATTTCGTGTCTT
GTTTTAAGAAAACTTTCACTTATTCTAAGTAACGGTTTGAGGTAGAATCT
GGTCATTTTGTGTCTTGTTTTAAGAAAACTTTCACTTATTCTAAGTAACG
ATTTGAGGTAGAATCTGGTCAATTCGTGTCTTGTTTTAAGAAAACTTTCA
CTTATTCTAAGTAACGATTTGAGGTAGAATCTGGTCAATTCGTGTCTTGT
TTTAAGAAAACTTTCACTTATTCTAAGTAACGGTTTGAGGTAGAATCTGG
TTATTTTGTGTCTTGTTTTAAGAAAACTTTCACTTATTCTAAGTAACGTT
TTGAGGTAGAATCTGGTCAATTTGTGGCTTGTTTTAAGAAAGTTTTTAAT
TATTCTAAGTAACGATTTGAGGGAGAATCTGGTCATTTCGTGTCTTGTTT
TAAAAAAACTTTCACTTATTCTAAGTAACGGTTTGAGGTAGAATCTGGTT
AGGTGTTTTCATGGTTTCAGCACTCGTTCACTTATTCTAAGTAACGATTT
CAGGTAGAATCTGGTTATTTTGTGTCTTGTTTTAAAAAAACTTTCACTTA
TTCTAAGTAACGGTTTGAGGTAGAATCTGGTTAGGTGTTTTCATGGTTTC
AGCACTCGTTCACTTATTCTAAGTAACGATTTCAGGTAGAATCTGGTTAT
TTTGTGTCTTGTTTTAAAAAAACTTTCACTTATTCTAAGTAACGGTTTGA
GGTAGAATCTGGTTAGGTGTTTTCATGGTTTCAGCACTCGTTCACTTATT
CTAAGTAACGATTTCAGGTAGAATCTGGTTATTTTGTGTCTTGTTTTAAA
AAAACTTTCACTTATTCTAAGTAACGGTTTGAGGTAGAATCTGGTTAGGT
GTTTTCATGGTTTCAGCACTCGTTCACTTATTCTAAGTAACGATTTGAGG
TAGAATCTGGTCATTTCGTGTCTTGTTTTAAGAAAACTTTCACTTATTCT
AAGTAACGATTTCAGGTAGAATCTGGTTATTTTGTGTCTTGTTTTAAGAA
AACTTCACTTATTCTAAGTAACGATTTGAGGTAGAATCTGGTCAATTCGT
GTCTTGTTTTAAAAAAACTTTCACTTATTCTAAGTAACGGTTTGAGGTAG
AATCTGGTTATTTTGTGTCTTGTTTTAAGAAAACTTTCACTTATTCTAAG
TAACGATTTGAGGTAGAATCTGGTCATTTGGTGTCTTGTTGAAAGAAAAC
TTTCACTTATTCTAAGTAACGATTTGAGGTAGAATCTGGTCATTTCGTGT
CTTCTTTTAAGAAAACTTTCACTTATTCTAAGTAGCGATTTGAGTAGAAT
CTGGTCATTTCGTGTCTTGTTTTAAGAAAACTTTCACTTATTCTAAGTAA
CGATTTGAGGTAGAATCTGGTCATTTCGTGTCTTCTTTTAAGAAAACTTT
CACTTATTCTAAGTAGCGATTTGAGTAGAATCTGGTCATTTCGTGTCTTG
TTTTAAGAAAACTTTCACTTATTCTAAGTAACGATTTGAGGTAGAATCTG
GTCATTTCGTGTCTTCTTTTAAGAAAACTTTCACTTATTCTAAGTAGCGA
TTTGAGTAGAATCTGGTCATTTCGTGTCTTGTTTTAAGAAAACTTTCACT
TATTCTAAGTAACGATTTGAGGTAGAATCTGGTCATTTCGTGTCTTCTTT
TAAGAAAACTTTCACTTATTCTAAGTAGCGATTTGAGTAGAATCTGGTCA
TTTCGTGTCTTGTTTTAAGAAAACTTTCACTTATTCTAAGTAACGATTTG
AGGTAGAATCTGGTCATTTCGTGTCTTCTTTTAAGAAAACTTTCACTTAT
TCTAAGTAGCGATTTGAGTAGAATCTGGTCATTTCGTGTCTTGTTTTAAG
AAAACTTTCACTTATTCTAAGTAACGATTTGAGGTAGAATCTGGTCATTT
CGTGTCTTCTTTTAAGAAAACTTTCACTTATTCTAAGTAGCGATTTGAGT
AGAATCTGGTCATTTCGTGTCTTGTTTTAAGAAAACTTTCACTTATTCTA
AGTAACGATTTGAGGTAGAATCTGGTCATTTCGTGTCTTCTTTTAAGAAA
ACTTTCACTTATTCTAAGTAGCGATTTGAGTAGAATCTGGTCATTTCGTG
TCTTGTTTTAAGAAAACTTTCACTTATTCTAAGTAACGATTTGAGGTAGA
ATCTGGTCATTTCGTGTCTTCTTTTAAGAAAACTTTCACTTATTCTAAGT
AGCGATTTGAGTAGAATCTGGTCATTTCGTGTCTTGTTTTAAGAAAACTT
TCACTTATTCTAAGTAACGATTTGAGGTAGAATCTGGTCATTTCGTGTCT
TCTTTTAAGAAAACTTTCACTTATTCTAAGTAGCGATTTGAGTAGAATCT
GGTCATTTCGTGTCTTGTTTTAAGAAAACTTTCACTTATTCTAAGTAACG
ATTTGAGGTAGAATCTGGTCATTTCGTGTCTTCTTTTAAGAAAACTTTCA
CTTATTCTAAGTAGCGATTTGAGTAGAATCTGGTCATTTCGTGTCTTGTT
TTAAGAAAACTTTCACTTATTCTAAGTAACGATTTGAGGTAGAATCTGGT
CATTTCGTGTCTTCTTTTAAGAAAACTTTCACTTATTCTAAGTAGCGATT
TGAGTAGAATCTGGTCATTTCGTGTCTTGTTTTAAGAAAACTTTCACTTA
TTCTAAGTAACGATTTGAGGTAGAATCTGGTCATTTCGTGTCTTCTTTTA
AGAAAACTTTCACTTATTCTAAGTAGCGATTTGAGTAGAATCTGGTCATT
TCGTGTCTTGTTTTAAGAAAACTTTCACTTATTCTAAGTAACGATTTGAG
GTAGAATCTGGTCATTTCGTGTCTTCTTTTAAGAAAACTTTCACTTATTC
TAAGTAGCGATTTGAGTAGAATCTGGTCATTTCGTGTCTTGTTTTAAGAA
AACTTTCACTTATTCTAAGTAACGATTTGAGGTAGAATCTGGTCATTTCG
TGTCTTCTTTTAAGAAAACTTTCACTTATTCTAAGTAGCGATTTGAGTAG
AATCTGGTCATTTCGTGTCTTGTTTTAAGAAAACTTTCACTTATTCTAAG
TAACGATTTGAGGTAGAATCTGGTCATTTCGTGTCTTCTTTTAAGAAAAC
TTTCACTTATTCTAAGTAGCGATTTGAGTAGAATCTGGTCATTTCGTGTC
TTGTTTTAAGAAAACTTTCACTTATTCTAAGTAACGATTTGAGGTAGAAT
CTGGTCATTTCGTGTCTTCTTTTAAGAAAACTTTCACTTATTCTAAGTAG
CGATTTGAGTAGAATCTGGTCATTTCGTGTCTTGTTTTAAGAAAACTTTC
ACTTATTCTAAGTAACGATTTGAGGTAGAATCTGGTCATTTCGTGTCTTC
TTTTAAGAAAACTTTCACTTATTCTAAGTAGCGATTTGAGTAGAATCTGG
TCATTTCGTGTCTTGTTTTAAGAAAACTTTCACTTATTCTAAGTAACGAT
TTGAGGTAGAATCTGGTCATTTCGTGTCTTCTTTTAAGAAAACTTTCACT
TATTCTAAGTAGCGATTTGAGTAGAATCTGGTCATTTCGTGTCTTGTTTT
AAGAAAACTTTCACTTATTCTAAGTAACGATTTGAGGTAGAATCTGGTCA
TTTCGTGTCTTCTTTTAAGAAAACTTTCACTTATTCTAAGTAACGATTTG
AGGTAGAATCTGGTCATTTCGTGTCTTGTTTTAAGAAAACTTTCACTTAT
TCTAAGTAACGGTTTGAGGTAGAATCTGGTCATTTCGTGTCTTCTTTTAA
GAAAACTTTCACTTATTCTAAGTAGCGATTTGAGTAGAATCTGGTCATTT
CGTGTCTTGTTTTAAGAAAACTTTCACTTATTCTAAGTAACGATTTGAGG
TAGAATCTGGTCATTTTGTGTCTTCTTTTAAGAAAACTTTCACTTATTCT
AAGTAACGGTTTGAGGTAGAATCTGGTCATTTCGTGTCTCGTTTTAAGAA
AACTTTCACTTATTCTAAGTAACGATTTGAGGTAGAATCTGGTCATTTCG
TGTCTTGTTTTAAGAAAACTTTCACTTATTCTAAGTAACGATTTGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCTTTCACTTATTCTAAGTAACGGTTTGAGGTAGAATCTGGTCATTTC
GTGTCTTGTTTTAAGAAAACTTTCACTTATTCTAAGTAACGATTTGAGGT
AGAATCTGGCTGTTTTGTGTTTCGTTGTAAGAAAACTTTTTTTATTTCTA
GTAGTAACGGTGGAGATAATCTAATCATTTTGTCCCTAGAACTTTGAATT
TATCGTGAGGAGAAAAATTATTCACAAAGCTCTTTAACTCGTTTTGGGAA
GTAATTTTTCGAAAACTTTTCTTCACTTATTTTTATGAGATTTATCAAAA
GATTTGTCAAGGGAAACCACTATTTTGTTTTCAAATAAATAAATTCTTTA
CACCAGATACGACACCACACAATTATTTCAATGAGCTGAAAGATTTGACC
GAAGAAACATACGTTCTTAACAACAACGAAGCGGTAACCCTAATCACTCA
CAGCTATGGTGGATTGATGACGTTATATTTCCTCAATAAAGTATCGAAAT
CATGGAAAAAGAAATTCATCAAACAGTGGATTGCTTTAGCAGGTAATTAG
CCATTTCTTTAAATGTACCTAAAACAAACATAGGTATCTTCGAAAATTTA
TATTTGTTCTTTTTCTCAGCCACAGGAAATATGCAAGAATGAGTGTTTTG
GAACTGGATTCCCATTAGAAATAAACACACTGAATTCTTTTCACAAATGG
AAAGATCATTGAATCTATGAGAATTTGAAATAAACTTTTAAGCTATCAAC
AGTCGCTTAAGATAAGATACTGAGACCGTAAACAGCGGTAGCTCCTTTGT
TCTATCAGTAATAACTAAAAAATTGCTCAATAGTTGAATGTTGCTGGGAA
AGAGGTGTCTTTGCTACCGTAGCTGTGAAGCTATGATAATTAAATATATG
ATAAAAGAGCTTTATTATAAAAAAGCTGGCACTTAACTTCGGCTCTTGAG
GGTAGAAAGTCTGTGCCTACTAACATAAATTCTTAATAATTTCCTTTTGT
TTCCAGCCCCGTTCGGTGGTAGTATTTTGGAGACGCTCGTCTATGCATCC
GGCTTCGTGGATAAGAAATTAGAACGAGTGATCGAACCTTTAGACGTACG
CGCTGGTCAAAGATCTTTTACAAGTAATTTAGTTTTATTGCCAAGTCGGT
TTGCCTGGAGTGACGATTACGTGTTTGCACAAATCAGTAATAAAACATTC
ACCATATCAAATATTAGTGGATTTCTAGACCAAGTTGGCTTTCACGAAGG
AACGCTAATGATGGAGCAAATAGTCAATAATACTGAACTTATGAAAATGT
CACCTGGTGTTCCAATATCATGTTTCTATGGTAACAAACTTAACTCTACT
GTTAACCGGTTAATTTTTGACAAATCCGGATTTCCCGATCATCCGATCGG
GTTTGAATATGGGCATGGAGATGGTTCGGTCAATTTGGAATCTTTAGTTT
TATGTGAAATGTTTGCAGACTTGCAGAAAGAGAATGTGACCATTCATGAG
TTACCGGATGTAGGTCATCTAGATATTCTTGAAAATGAAGAACTCTTTTC
AACAATCGAATCCATGGTCATCTGAATAATTTTGCATTCAAAAGACAATG
TCCCGGCAAACAACATAAACATTTTACCATTAAAAAGGGTTTGAATCAAT
CCCATTCTGATGATTTGCATCCAAGTGTATTAAATATAAATAGGCCAAAC
AAACAATTGTTATTTTTGAAGGGTTTATGTAAATTTTTAGCGTCTGTTCG
ATAAAAAAATCATAACAATGTGAATAGTTTTAAGAGA

Coding sequence (CDS) from alignment at sc0000376:80756..88642-

>TCONS_00021000 ID=TCONS_00021000|Name=TCONS_00021000|organism=Clytia hemisphaerica|type=CDS|length=6090bp|location=Sequence derived from alignment at sc0000376:80756..88642- (Clytia hemisphaerica)
CCCCGTTCGGTGGTAGTATTTTGGAGACGCTCGTCTATGCATCCGGCTTC
GTGGATAAGAAATTAGAACGAGTGATCGAACCTTTAGACGTACGCGCTGG
TCAAAGATCTTTTACAAGTAATTTAGTTTTATTGCCAAGTCGGTTTGCCT
GGAGTGACGATTACGTGTTTGCACAAATCAGTAATAAAACATTCACCATA
TCAAATATTAGTGGATTTCTAGACCAAGTTGGCTTTCACGAAGGAACGCT
AATGATGGAGCAAATAGTCAATAATACTGAACTTATGAAAATGTCACCTG
GTGTTCCAATATCATGTTTCTATGGTAACAAACTTAACTCTACTGTTAAC
CGGTTAATTTTTGACAAATCCGGATTTCCCGATCATCCGATCGGGTTTGA
ATATGGGCATGGAGATGGTTCGGTCAATTTGGAATCTTTAGTTTTATGTG
AAATGTTTGCAGACTTGCAGAAAGAGAATGTGACCATTCATGAGTTACCG
GATGTAGGTCATCTAGATATTCTTGAAAATGAAGAACTCTTTTCAACAAT
CGAATCCATGGTCATCTGAATACGACACCACACAATTATTTCAATGAGCT
GAAAGATTTGACCGAAGAAACATACGTTCTTAACAACAACGAAGCGGTAA
CCCTAATCACTCACAGCTATGGTGGATTGATGACGTTATATTTCCTCAAT
AAAGTATCGAAATCATGGAAAAAGAAATTCATCAAACAGTGGATTGCTTT
AGCAGGTTGGAATGGGATTTGGAGAAGATGACGACAAGCGATGTTCAAGG
AGTCGAAACTAAAGTTCCTGAGTTTGGGCGGACAGAGAGCGTTGAGTACC
TCGATAGTGTTGGTGTGATTCCTTACATGAAATCACTGGTCGAATATTTT
GTTACCATGGGCTACGAGCGAAACAAAGAAATAAGAGCAGCCCCATATGA
CTTTAGGTACTCTCCAGTCCCAGGAACAGGTGGAAACCGTCTGGAAGCAA
AATTAACAGGCAAGAAATGGAAACCAGCCTGGTATTGTCTATCATCCACA
ATCACTTTCTATACTCTATGGTTTGATTTGACGGCACCCTTCCCTGGCTT
CACCAAGTGCTGGGCTGATAATATCAGATGCAATGGATTTCGAATTCATT
TCCAACATTCTTCATTGTGTTGGTCATTGTAGTTGATGTGTCGATTGCAA
AGTCTCCCATTATACTGACCCCGTTCGGTGGTAGTATTTTGGAGACGCTC
GTCTATGCATCCGGCTTCGTGGATAAGAAATTAGAACGAGTGATCGAACC
TTTAGACGTACGCGCTGGTCAAAGATCTTTTACAAGTAATTTAGTTTTAT
TGCCAAGTCGGTTTGCCTGGAGTGACGATTACGTGTTTGCACAAATCAGT
AATAAAACATTCACCATATCAAATATTAGTGGATTTCTAGACCAAGTTGG
CTTTCACGAAGGAACGCTAATGATGGAGCAAATAGTCAATAATACTGAAC
TTATGAAAATGTCACCTGGTGTTCCAATATCATGTTTCTATGGTAACAAA
CTTAACTCTACTGTTAACCGGTTAATTTTTGACAAATCCGGATTTCCCGA
TCATCCGATCGGGTTTGAATATGGGCATGGAGATGGTTCGGTCAATTTGG
AATCTTTAGTTTTATGTGAAATGTTTGCAGACTTGCAGAAAGAGAATGTG
ACCATTCATGAGTTACCGGATGTAGGTCATCTAGATATTCTTGAAAATGA
AGAACTCTTTTCAACAATCGAATCCATGGTCATCTGAATACGACACCACA
CAATTATTTCAATGAGCTGAAAGATTTGACCGAAGAAACATACGTTCTTA
ACAACAACGAAGCGGTAACCCTAATCACTCACAGCTATGGTGGATTGATG
ACGTTATATTTCCTCAATAAAGTATCGAAATCATGGAAAAAGAAATTCAT
CAAACAGTGGATTGCTTTAGCAGGTTGGAATGGGATTTGGAGAAGATGAC
GACAAGCGATGTTCAAGGAGTCGAAACTAAAGTTCCTGAGTTTGGGCGGA
CAGAGAGCGTTGAGTACCTCGATAGTGTTGGTGTGATTCCTTACATGAAA
TCACTGGTCGAATATTTTGTTACCATGGGCTACGAGCGAAACAAAGAAAT
AAGAGCAGCCCCATATGACTTTAGGTACTCTCCAGTCCCAGGAACAGGTG
GAAACCGTCTGGAAGCAAAATTAACAGGCAAGAAATGGAAACCAGCCTGG
TATTGTCTATCATCCACAATCACTTTCTATACTCTATGGTTTGATTTGAC
GGCACCCTTCCCTGGCTTCACCAAGTGCTGGGCTGATAATATCAGATGCA
ATGGATTTCGAATTCATTTCCAACATTCTTCATTGTGTTGGTCATTGTAG
TTGATGTGTCGATTGCAAAGTCTCCCATTATACTGACCCCGTTCGGTGGT
AGTATTTTGGAGACGCTCGTCTATGCATCCGGCTTCGTGGATAAGAAATT
AGAACGAGTGATCGAACCTTTAGACGTACGCGCTGGTCAAAGATCTTTTA
CAAGTAATTTAGTTTTATTGCCAAGTCGGTTTGCCTGGAGTGACGATTAC
GTGTTTGCACAAATCAGTAATAAAACATTCACCATATCAAATATTAGTGG
ATTTCTAGACCAAGTTGGCTTTCACGAAGGAACGCTAATGATGGAGCAAA
TAGTCAATAATACTGAACTTATGAAAATGTCACCTGGTGTTCCAATATCA
TGTTTCTATGGTAACAAACTTAACTCTACTGTTAACCGGTTAATTTTTGA
CAAATCCGGATTTCCCGATCATCCGATCGGGTTTGAATATGGGCATGGAG
ATGGTTCGGTCAATTTGGAATCTTTAGTTTTATGTGAAATGTTTGCAGAC
TTGCAGAAAGAGAATGTGACCATTCATGAGTTACCGGATGTAGGTCATCT
AGATATTCTTGAAAATGAAGAACTCTTTTCAACAATCGAATCCATGGTCA
TCTGAATACGACACCACACAATTATTTCAATGAGCTGAAAGATTTGACCG
AAGAAACATACGTTCTTAACAACAACGAAGCGGTAACCCTAATCACTCAC
AGCTATGGTGGATTGATGACGTTATATTTCCTCAATAAAGTATCGAAATC
ATGGAAAAAGAAATTCATCAAACAGTGGATTGCTTTAGCAGGTTGGAATG
GGATTTGGAGAAGATGACGACAAGCGATGTTCAAGGAGTCGAAACTAAAG
TTCCTGAGTTTGGGCGGACAGAGAGCGTTGAGTACCTCGATAGTGTTGGT
GTGATTCCTTACATGAAATCACTGGTCGAATATTTTGTTACCATGGGCTA
CGAGCGAAACAAAGAAATAAGAGCAGCCCCATATGACTTTAGGTACTCTC
CAGTCCCAGGAACAGGTGGAAACCGTCTGGAAGCAAAATTAACAGGCAAG
AAATGGAAACCAGCCTGGTATTGTCTATCATCCACAATCACTTTCTATAC
TCTATGGTTTGATTTGACGGCACCCTTCCCTGGCTTCACCAAGTGCTGGG
CTGATAATATCAGATGCAATGGATTTCGAATTCATTTCCAACATTCTTCA
TTGTGTTGGTCATTGTAGTTGATGTGTCGATTGCAAAGTCTCCCATTATA
CTGACCCCGTTCGGTGGTAGTATTTTGGAGACGCTCGTCTATGCATCCGG
CTTCGTGGATAAGAAATTAGAACGAGTGATCGAACCTTTAGACGTACGCG
CTGGTCAAAGATCTTTTACAAGTAATTTAGTTTTATTGCCAAGTCGGTTT
GCCTGGAGTGACGATTACGTGTTTGCACAAATCAGTAATAAAACATTCAC
CATATCAAATATTAGTGGATTTCTAGACCAAGTTGGCTTTCACGAAGGAA
CGCTAATGATGGAGCAAATAGTCAATAATACTGAACTTATGAAAATGTCA
CCTGGTGTTCCAATATCATGTTTCTATGGTAACAAACTTAACTCTACTGT
TAACCGGTTAATTTTTGACAAATCCGGATTTCCCGATCATCCGATCGGGT
TTGAATATGGGCATGGAGATGGTTCGGTCAATTTGGAATCTTTAGTTTTA
TGTGAAATGTTTGCAGACTTGCAGAAAGAGAATGTGACCATTCATGAGTT
ACCGGATGTAGGTCATCTAGATATTCTTGAAAATGAAGAACTCTTTTCAA
CAATCGAATCCATGGTCATCTGAATACGACACCACACAATTATTTCAATG
AGCTGAAAGATTTGACCGAAGAAACATACGTTCTTAACAACAACGAAGCG
GTAACCCTAATCACTCACAGCTATGGTGGATTGATGACGTTATATTTCCT
CAATAAAGTATCGAAATCATGGAAAAAGAAATTCATCAAACAGTGGATTG
CTTTAGCAGGTTGGAATGGGATTTGGAGAAGATGACGACAAGCGATGTTC
AAGGAGTCGAAACTAAAGTTCCTGAGTTTGGGCGGACAGAGAGCGTTGAG
TACCTCGATAGTGTTGGTGTGATTCCTTACATGAAATCACTGGTCGAATA
TTTTGTTACCATGGGCTACGAGCGAAACAAAGAAATAAGAGCAGCCCCAT
ATGACTTTAGGTACTCTCCAGTCCCAGGAACAGGTGGAAACCGTCTGGAA
GCAAAATTAACAGGCAAGAAATGGAAACCAGCCTGGTATTGTCTATCATC
CACAATCACTTTCTATACTCTATGGTTTGATTTGACGGCACCCTTCCCTG
GCTTCACCAAGTGCTGGGCTGATAATATCAGATGCAATGGATTTCGAATT
CATTTCCAACATTCTTCATTGTGTTGGTCATTGTAGTTGATGTGTCGATT
GCAAAGTCTCCCATTATACTGACCCCGTTCGGTGGTAGTATTTTGGAGAC
GCTCGTCTATGCATCCGGCTTCGTGGATAAGAAATTAGAACGAGTGATCG
AACCTTTAGACGTACGCGCTGGTCAAAGATCTTTTACAAGTAATTTAGTT
TTATTGCCAAGTCGGTTTGCCTGGAGTGACGATTACGTGTTTGCACAAAT
CAGTAATAAAACATTCACCATATCAAATATTAGTGGATTTCTAGACCAAG
TTGGCTTTCACGAAGGAACGCTAATGATGGAGCAAATAGTCAATAATACT
GAACTTATGAAAATGTCACCTGGTGTTCCAATATCATGTTTCTATGGTAA
CAAACTTAACTCTACTGTTAACCGGTTAATTTTTGACAAATCCGGATTTC
CCGATCATCCGATCGGGTTTGAATATGGGCATGGAGATGGTTCGGTCAAT
TTGGAATCTTTAGTTTTATGTGAAATGTTTGCAGACTTGCAGAAAGAGAA
TGTGACCATTCATGAGTTACCGGATGTAGGTCATCTAGATATTCTTGAAA
ATGAAGAACTCTTTTCAACAATCGAATCCATGGTCATCTGAATACGACAC
CACACAATTATTTCAATGAGCTGAAAGATTTGACCGAAGAAACATACGTT
CTTAACAACAACGAAGCGGTAACCCTAATCACTCACAGCTATGGTGGATT
GATGACGTTATATTTCCTCAATAAAGTATCGAAATCATGGAAAAAGAAAT
TCATCAAACAGTGGATTGCTTTAGCAGGTTGGAATGGGATTTGGAGAAGA
TGACGACAAGCGATGTTCAAGGAGTCGAAACTAAAGTTCCTGAGTTTGGG
CGGACAGAGAGCGTTGAGTACCTCGATAGTGTTGGTGTGATTCCTTACAT
GAAATCACTGGTCGAATATTTTGTTACCATGGGCTACGAGCGAAACAAAG
AAATAAGAGCAGCCCCATATGACTTTAGGTACTCTCCAGTCCCAGGAACA
GGTGGAAACCGTCTGGAAGCAAAATTAACAGGCAAGAAATGGAAACCAGC
CTGGTATTGTCTATCATCCACAATCACTTTCTATACTCTATGGTTTGATT
TGACGGCACCCTTCCCTGGCTTCACCAAGTGCTGGGCTGATAATATCAGA
TGCAATGGATTTCGAATTCATTTCCAACATTCTTCATTGTGTTGGTCATT
GTAGTTGATGTGTCGATTGCAAAGTCTCCCATTATACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011778XLOC_011778Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021000-exon-sc0000376-1575043694:88477..88642TCONS_00021000-exon-sc0000376-1575043694:88477..88642Clytia hemisphaericaexon
TCONS_00021000-exon-sc0000376-1575043694:88047..88206TCONS_00021000-exon-sc0000376-1575043694:88047..88206Clytia hemisphaericaexon
TCONS_00021000-exon-sc0000376-1575043694:87260..87471TCONS_00021000-exon-sc0000376-1575043694:87260..87471Clytia hemisphaericaexon
TCONS_00021000-exon-sc0000376-1575043694:82001..82186TCONS_00021000-exon-sc0000376-1575043694:82001..82186Clytia hemisphaericaexon
TCONS_00021000-exon-sc0000376-1575043694:80756..81536TCONS_00021000-exon-sc0000376-1575043694:80756..81536Clytia hemisphaericaexon
TCONS_00021000-exon-sc0000376-1510915933:88477..88642TCONS_00021000-exon-sc0000376-1510915933:88477..88642Clytia hemisphaericaexon
TCONS_00021000-exon-sc0000376-1510915933:88047..88206TCONS_00021000-exon-sc0000376-1510915933:88047..88206Clytia hemisphaericaexon
TCONS_00021000-exon-sc0000376-1510915933:87260..87471TCONS_00021000-exon-sc0000376-1510915933:87260..87471Clytia hemisphaericaexon
TCONS_00021000-exon-sc0000376-1510915933:82001..82186TCONS_00021000-exon-sc0000376-1510915933:82001..82186Clytia hemisphaericaexon
TCONS_00021000-exon-sc0000376-1510915933:80756..81536TCONS_00021000-exon-sc0000376-1510915933:80756..81536Clytia hemisphaericaexon
TCONS_00021000-exon-sc0000376-1491911889:88477..88642TCONS_00021000-exon-sc0000376-1491911889:88477..88642Clytia hemisphaericaexon
TCONS_00021000-exon-sc0000376-1491911889:88047..88206TCONS_00021000-exon-sc0000376-1491911889:88047..88206Clytia hemisphaericaexon
TCONS_00021000-exon-sc0000376-1491911889:87260..87471TCONS_00021000-exon-sc0000376-1491911889:87260..87471Clytia hemisphaericaexon
TCONS_00021000-exon-sc0000376-1491911889:82001..82186TCONS_00021000-exon-sc0000376-1491911889:82001..82186Clytia hemisphaericaexon
TCONS_00021000-exon-sc0000376-1491911889:80756..81536TCONS_00021000-exon-sc0000376-1491911889:80756..81536Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021000-proteinTCONS_00021000-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000376supercontigsc0000376:80756..88642 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.92746	3.20491	1.17551	0	1.24055	0.601273	6.02932	5.37076	1.16672	0.328207	4.71484	3.93831	5.35429	5.11532	4.8381	7.60678	4.62372	6.97835	0	0.426315	3.65252	3.95044	5.58696	4.22329	2.67459	1.07052	1.53896	1.42667	0	2.04312
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029058AB_hydrolase
IPR003386LACT/PDAT_acylTrfase
Vocabulary: Molecular Function
TermDefinition
GO:0008374O-acyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006629lipid metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006629 lipid metabolic process
molecular_function GO:0008374 O-acyltransferase activity
Blast
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BLAST of TCONS_00021000 vs. Swiss-Prot (Human)
Match: PAG15 (Group XV phospholipase A2 OS=Homo sapiens GN=PLA2G15 PE=1 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 9.568e-66
Identity = 139/386 (36.01%), Postives = 208/386 (53.89%), Query Frame = 1 
Query:  154 PIILIPGTGGNRLEAKLTGKKWKPA---WYCLSSTITFYTLWFDLTAPFPGFTKCWADNIRLEWDLEKMTTSDVQGVETKVPEFGRTESVEYLD----SVGVIPYMKSLVEYFVTMGYERNKEIRAAPYDFRYSPDTTPHNYFNELKDLTEETYVLNNNEAVTLITHSYGGLMTLYFLNXXXXXXXXXXXXXXXALAAPFGGSILETLVYASGFVDKKLERVIEPLDVRAGQRSFTSNLVLLPSRFAWSDDYVFAQISNKTFTISNISGFLDQVGFHEGTLMMEQIVNNTELMKMSPGVPISCFYGNKLNSTVNRLIFDKSGFPDHPIGFEYGHGDGSVNLESLVLCEMFADLQKENVTIHELPDVGHLDILENEELFSTIESMVI 1290
            P++L+PG  GN+LEAKL     KP    + C   T +++T+W +L    P    CW DNIRL ++     T    GV+ +VP FG+T S+E+LD    SVG   Y  ++VE  V  GY R +++R APYD+R +P+     YF  L+++ EE Y L     V L+ HS G + TLYFL +  ++WK K+I+ +++L AP+GG      V ASG  D     VI PL +R  QRS  S   LLP  + WS + VF Q     +T+ +   F   +GF +G LM +      E   M PGV + C YG  + +  +   F    FPD      +G GDG+VNL+S + C+ +   Q+  V + ELP   H+++L N    + ++ +++
Sbjct:   39 PVVLVPGDLGNQLEAKLD----KPTVVHYLCSKKTESYFTIWLNLELLLPVIIDCWIDNIRLVYNKTSRATQFPDGVDVRVPGFGKTFSLEFLDPSKSSVGS--YFHTMVESLVGWGYTRGEDVRGAPYDWRRAPNEN-GPYFLALREMIEEMYQLYGG-PVVLVAHSMGNMYTLYFLQRQPQAWKDKYIRAFVSLGAPWGGVAKTLRVLASG--DNNRIPVIGPLKIREQQRSAVSTSWLLPYNYTWSPEKVFVQTPTINYTLRDYRKFFQDIGFEDGWLMRQDTEGLVE-ATMPPGVQLHCLYGTGVPTPDS---FYYESFPDRDPKICFGDGDGTVNLKSALQCQAWQSRQEHQVLLQELPGSEHIEMLANATTLAYLKRVLL 410
The following BLAST results are available for this feature:
BLAST of TCONS_00021000 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PAG159.568e-6636.01Group XV phospholipase A2 OS=Homo sapiens GN=PLA2G... [more]
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