TCONS_00020986 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020986
Unique NameTCONS_00020986
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1654

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020986 ID=TCONS_00020986|Name=TCONS_00020986|organism=Clytia hemisphaerica|type=transcript|length=1654bp
AAACCAATTCTTCTCAGGAATGTCAAGAGCTTTACCGATGGATTCCTACG
CTACTTCTCATCCAATTGTTCCCGAGATTAACACGCCGACAGACATACGA
AACGTCTATGATAATATCGTGTACTATAAAGGTGAACCGGTCGTTCATAT
TTTGGCCACGCTTGTTGGGATGACGAACTTTCGCAAAGGCATGAAACGCT
TtttacaacaatacaaatacaaaaatgcaaaacaagacgacttattCANA
CGAAAACtgaattcaaaaagtctcttcCGATGTCGACATACAATTTAGGA
CTTCTTCTCGCTGACGATACATACCAAGTCAAAGAAAAGCGTATTGTTGG
TTCTTTGACCATTCAAATTTGGGACTTCAAAACGAACTCTGGTTGGAAAA
GCGAGACTGATGATATAGTAAAACTTTTGGATTATTATGAGCGACATTTC
TTTCAAGTACCATTCCCTCTTGAGAAATTAGACGTTGCCGTGATACCTGA
TTACATCCCAGGAGCAATGGAGACCTGGGGCCTAATGATGTTTCGTGTGG
GGTTAGATAAATATCATTTGGTGGCTCATGAGATTGCCCATCAATGGTTT
GGTAATCTGGTCACTATGGAGTTTTGGGATGTTGCTTGGATCAAAGAAGG
GTTCGCACAATATCTTGCGACGGTCGTTGGCGACACCGTCAGACAAACGC
AACGCTACAAAAACCAATTCTTCTCAGGAATGTCAAGAGCTTTACCGATG
GATTCCTACGCTACTTCTCATCCAATTGTTCCCGAGATTAACACGCCGAC
AGACATACGAAACGTCTATGATAATATCGTGTACTATAAAGGTGAACCGG
TCGTTCATATTTTGGCCACACTTGTTGGGATGACGAACTTTCGCAAAGGC
ATGAAACGCTTtttacaacaatacaaatacaaaaatGCAGAACAAGACGA
CTTATTCAGAGTTTTTGGcGATATTAGTGGCATCGATGTCAAATCTTTCA
TGGATCCATGGCTCTTACAAATGGGCTACCCACTTTTGAGCGTCAACCGA
TTGAATAACACCCACATTGAAGTTGAACAAGAGAGATTTTCAATGGATGC
ACCCAATACTGCACTTAAAGCCTCGCCCTTCAACTATCAGTGGCCTATCA
TCGTTACCTATCGAGACCTAAATGACGTCAAATCAAAACAAGTCATCATG
ACAGGCAAAAAAGCCATCCTGCCAATCCCCGATGGTTCCGTATTAAATCC
GGACCATATGCAATATTACCGGATACGATTTTCAAAGAACAGCACAGCTC
AGTTGAAAAAGCAACTCATCCACAACCAAAGTAGATTCACTGTCAACGAT
CGAATTGGAATCATCTCTGACATGTTTTTCAATTTGCAAGCAAGGAAAAT
GAAACTAGAACAAGTTATTGACTTCCTGGAATATTTCAAgCATGAAAGAG
AGCACTCTACATGGACAGAGGGAATTAAAATCTTGACCAAAGTACACGAC
TTGATAAAACACGATGATAGCTTACGTAACTTATGGGATAAGAAAATCAT
CCAACCTTACGTCGAAAGAGCTTACTCGCTTTTCCAAAGCAAAGGTGCAG
TCATACGCGATGCTTGTTATTTGAATCATACACAAGCCATCCAGGATGCC
GAGC
Run BLAST on NCBI

transcript from alignment at sc0000376:168841..171290+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020986 ID=TCONS_00020986|Name=TCONS_00020986|organism=Clytia hemisphaerica|type=transcript|length=2450bp|location=Sequence derived from alignment at sc0000376:168841..171290+ (Clytia hemisphaerica)
AAACCAATTCTTCTCAGGAATGTCAAGAGCTTTACCGATGGATTCCTACG
CTACTTCTCATCCAATTGTTCCCGAGATTAACACGCCGACAGACATACGA
AACGTCTATGATAATATCGTGTACTATAAAGGTGAACCGGTCGTTCATAT
TTTGGCCACGCTTGTTGGGATGACGAACTTTCGCAAAGGCATGAAACGCT
TtttacaacaatacaaatacaaaaatgcaaaacaagacgacttattCANA
CGAAAACtgaattcaaaaagtctcttcCGATGTCGACATACAATTTAGGA
CTTCTTCTCGCTGACGATACATACCAAGTCAAAGAAAAGCGTATTGTTGG
TTCTTTGACCATTCAAATTTGGGACTTCAAAACGAACTCTGGTTGGAAAA
GCGAGACTGATGATATAGTAAAACTTTTGGATTATTATGAGCGACATTTC
TTTCAAGTACCATTCCCTCTTGAGAAATTAGACGTTGCCGTGATACCTGA
TTACATCCCAGGAGCAATGGAGACCTGGGGCCTAATGATGTTTCGTGTGG
GGTTAGATAAATATCATTTGGTGGCTCATGAGATTGCCCATCAATGGTTT
GGTAATCTGGTCACTATGGAGTTTTGGGATGTTGCTTGGATCAAAGAAGG
TGAGTGTATTtcttcatcttgattttttcttcattttcctaaTTTCATAT
TAAAAAAAGCTTAGAGCTAAACCCATAGGGAAGCTTTTAGCGACTACTGA
AGCCTAAAAACAACACTTCTCATACAAAAGGTTGAAATCAATCTTCTCAA
ATTGTTTTCAGGGTTCGCACAATATCTTGCGACGGTCGTTGGCGACACCG
TCAGACAAACGCAACGCTACAAAAACCAATTCTTCTCAGGAATGTCAAGA
GCTTTACCGATGGATTCCTACGCTACTTCTCATCCAATTGTTCCCGAGAT
TAACACGCCGACAGACATACGAAACGTCTATGATAATATCGTGTACTATA
AAGGTGAACCGGTCGTTCATATTTTGGCCACACTTGTTGGGATGACGAAC
TTTCGCAAAGGCATGAAACGCTTtttacaacaatacaaatacaaaaatGC
AGAACAAGACGACTTATTCAGAGTTTTTGGGTAAGGATATATCTCGATTC
CCTAAATTAAATGTCAGACATTTAGTCACACTTTTATTCTCTCGTTATAT
GTTTTTTAACTGTAAGTATGTGAGAGAAAAATACCCCATGTAATTCGATA
TTATCAAGAGAACGAAAAAAGAGGGCTCTTTAGCTCTCACATGTCAAAAA
AGACTGCTTGAATTTAATACCATTTTTTAAGAGGCTGTCAAAATAATCGg
tgtttatttttcaataattttgtattctttcaatttattcagcGATATTA
GTGGCATCGATGTCAAATCTTTCATGGATCCATGGCTCTTACAAATGGGC
TACCCACTTTTGAGCGTCAACCGATTGAATAACACCCACATTGAAGTTGA
ACAAGAGAGATTTTCAATGGATGCACCCAATACTGGTacgtaaacaaaaa
aaaattaaaaagatagttTCACGTACGAAGAACTCTTAGATTTTCCcttc
aaaatgttgaaatacaAGAGAAGTGCCACTTCAAATGAGACGCAGGCAAA
ATTCCAAAATAATTTCACAATAATCAGTCAATTTTCCATTCTATCATTTG
TAGCACTTAAAGCCTCGCCCTTCAACTATCAGTGGCCTATCATCGTTACC
TATCGAGACCTAAATGACGTCAAATCAAAACAAGTCATCATGACAGGCAA
AAAAGCCATCCTGCCAATCCCCGATGGTTCCGTATTAAATCCGGACCATA
TGCAATATTACCGGATACGATTTTCAAAGAACAGCACAGCTCAGTTGAAA
AAGCAACTCATCCACAACCAAAGTAGATTCACTGTCAACGATCGAATTGG
AATCATCTCTGACATGTTTTTCAATTTGCAAGCAAGGAAAATGAAACTAG
AACAAGTTATTGACTTCCTGGAATATTTCAAggtatgaatatttttttaa
attcaaaagtttCCACTTTTTCGGCCCCTTTTACGCTAGCCTTGTGACAG
AATTAGGGTCAACGTAAACAAATGACCACCGTCCTTTATAGGGCGTAAGA
GGGCTGATATATGCtgattttcaaacaatttcaacaaaaaataaacagta
aaaataatggaaagaTTTTCACAATTAATTTTTTAGCATGAAAGAGAGCA
CTCTACATGGACAGAGGGAATTAAAATCTTGACCAAAGTACACGACTTGA
TAAAACACGATGATAGCTTACGTAACTTATGGGATAAGAAAATCATCCAA
CCTTACGTCGAAAGAGCTTACTCGCTTTTCCAAAGCAAAGGTGCAGTCAT
ACGCGATGCTTGTTATTTGAATCATACACAAGCCATCCAGGATGCCGAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011770XLOC_011770Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020986-exon-sc0000376-1491911889:168841..169489TCONS_00020986-exon-sc0000376-1491911889:168841..169489Clytia hemisphaericaexon
TCONS_00020986-exon-sc0000376-1510915933:168841..169489TCONS_00020986-exon-sc0000376-1510915933:168841..169489Clytia hemisphaericaexon
TCONS_00020986-exon-sc0000376-1575043694:168841..169489TCONS_00020986-exon-sc0000376-1575043694:168841..169489Clytia hemisphaericaexon
TCONS_00020986-exon-sc0000376-1491911889:169652..169970TCONS_00020986-exon-sc0000376-1491911889:169652..169970Clytia hemisphaericaexon
TCONS_00020986-exon-sc0000376-1510915933:169652..169970TCONS_00020986-exon-sc0000376-1510915933:169652..169970Clytia hemisphaericaexon
TCONS_00020986-exon-sc0000376-1575043694:169652..169970TCONS_00020986-exon-sc0000376-1575043694:169652..169970Clytia hemisphaericaexon
TCONS_00020986-exon-sc0000376-1491911889:170233..170375TCONS_00020986-exon-sc0000376-1491911889:170233..170375Clytia hemisphaericaexon
TCONS_00020986-exon-sc0000376-1510915933:170233..170375TCONS_00020986-exon-sc0000376-1510915933:170233..170375Clytia hemisphaericaexon
TCONS_00020986-exon-sc0000376-1575043694:170233..170375TCONS_00020986-exon-sc0000376-1575043694:170233..170375Clytia hemisphaericaexon
TCONS_00020986-exon-sc0000376-1491911889:170544..170872TCONS_00020986-exon-sc0000376-1491911889:170544..170872Clytia hemisphaericaexon
TCONS_00020986-exon-sc0000376-1510915933:170544..170872TCONS_00020986-exon-sc0000376-1510915933:170544..170872Clytia hemisphaericaexon
TCONS_00020986-exon-sc0000376-1575043694:170544..170872TCONS_00020986-exon-sc0000376-1575043694:170544..170872Clytia hemisphaericaexon
TCONS_00020986-exon-sc0000376-1491911889:171077..171290TCONS_00020986-exon-sc0000376-1491911889:171077..171290Clytia hemisphaericaexon
TCONS_00020986-exon-sc0000376-1510915933:171077..171290TCONS_00020986-exon-sc0000376-1510915933:171077..171290Clytia hemisphaericaexon
TCONS_00020986-exon-sc0000376-1575043694:171077..171290TCONS_00020986-exon-sc0000376-1575043694:171077..171290Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000376supercontigsc0000376:168841..171290 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.219512	0.086317	0	0	0.232843	0	0.226897	0.154644	0	0.281066	2.34875	1.75448	0.641834	0.865759	1.41754	2.56624	0.860022	1.09853	0.89779	0.772885	0.582349	0.957569	0	0	0.626825	0.465855	1.13762	0.454755
Blast
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BLAST of TCONS_00020986 vs. Swiss-Prot (Human)
Match: ERAP2 (Endoplasmic reticulum aminopeptidase 2 OS=Homo sapiens GN=ERAP2 PE=1 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 1.874e-60
Identity = 142/469 (30.28%), Postives = 233/469 (49.68%), Query Frame = 1 
Query:  418 VKLLDYYERHFFQVPFPLEKLDVAVIPDYIPGAMETWGLMMFR-----------VGLDKY---HLVAHEIAHQWFGNLVTMEFWDVAWIKEGFAQYLATVVGDTVRQTQRYKNQFFSGMSRALPMDSYATSHPIVPEINTPTDIRNVYDNIVYYKGEPVVHILATLVGMTNFRKGMKRFLQQYKYKNAEQDDLFRVFGD-------ISG--------------------IDVKSFMDPWLLQMGYPLLSVNRLNNTHIEVEQERF--SMDAPNTALKASPFNYQWPIIVTYRDLNDVKSKQVIMTGKKAILPIPDGSV---LNPDHMQYYRIRFSKNSTAQLKKQLIHNQSRFTVNDRIGIISDMFFNLQARKMKLEQVIDFLEYFKHEREHSTWTEGIKILTKVHDLIKH---DDSLRNL--WDKKIIQPYVER-AYSLFQS------KGAVIRDACYLNHTQAIQDA 1650
            +KLLD+YE+ +F + +PL KLD+  IPD+ PGAME WGL+ +R              DK     ++AHE+AHQWFGNLVTME+W+  W+KEGFA+Y+  +  +      ++ + F +     +  DS  +S PI     TPT I+ ++D + Y KG  ++++L   +G   F+KG+ ++L+++ Y+NA+ DDL+    +        SG                     +VK  M  W LQ G PLL V + +   + ++QERF   +   +   +A    Y W I +TY   +     + I+  K   L +P+ +     N D   YY + +  +   QL  QL  N +     DR+G+I D+F  + A ++ L++ +D   Y +HE       EG+  L   + ++      D   NL  +  +  +P ++R ++S   S      + A+++ AC LNH   IQ A
Sbjct:  304 LKLLDFYEK-YFDIYYPLSKLDLIAIPDFAPGAMENWGLITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLKEGFAKYMELIAVNATYPELQFDDYFLNVCFEVITKDSLNSSRPISKPAETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKFSYRNAKNDDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMTTWTLQKGIPLLVVKQ-DGCSLRLQQERFLQGVFQEDPEWRALQERYLWHIPLTYSTSSSNVIHRHILKSKTDTLDLPEKTSWVKFNVDSNGYYIVHYEGHGWDQLITQLNQNHTLLRPKDRVGLIHDVFQLVGAGRLTLDKALDMTYYLQHETSSPALLEGLSYLESFYHMMDRRNISDISENLKRYLLQYFKPVIDRQSWSDKGSVWDRMLRSALLKLACDLNHAPCIQKA 770
The following BLAST results are available for this feature:
BLAST of TCONS_00020986 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ERAP21.874e-6030.28Endoplasmic reticulum aminopeptidase 2 OS=Homo sap... [more]
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