TCONS_00020983 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020983
Unique NameTCONS_00020983
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2675

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020983 ID=TCONS_00020983|Name=TCONS_00020983|organism=Clytia hemisphaerica|type=transcript|length=2675bp
TAGCTaaggtaaaaaaaagattgttaTCGTTGATGGTAAGAAGGTCGTCT
ATAAAGCAATAAGTATTGCTAAAATGTCTAGCGTtctgaagattttcttt
tttcaagctcTTGATCCACTTTGActcaaaataataaaagaaaagatTAG
TCATAAACGGTGTCGGATCCGACCCCATTGGAATTCCAATGATCTGACGG
AAAATATTATCCccaaaagtgaaataaaaattcCCCATAAGATATGAGAG
GGCCTCTTTGAATATTATGAGGTTTTGTTTCGGTCAGTGGTCTAAAGCTT
GAAACCAGTTCCCGGTTATTTCCCGGCTGGTTGTGGACCACGTAAAAACA
ATCGAAAGTCTGACTGTCTAAAAGACTTAGATTACTGGCTATCTACGTAT
AATACTGAGTCTAAAACTTATGAAAGATTCAAAGCATTGATCATGTTAAG
TCAGTGACTATTTTTAAGTAATTATACTTTTTCTTCTATCAGGGTGAATC
AAACCGAATCATATCTCGCCATCAATTAAACCATTTATCATCCCGATCTC
ATTGCATCTTTACTCTACACATTGAATCACACAGTAAAACACAATCACAA
ACAAATTACATCAGGGCTAAATTCAATTTTGTCGATCTGGCTGGTTCAGA
ACGGCTTGGTAAAACAATGAGTAAGGGACACACTCAAAAAGAGGCTACAT
ACATAAATAAATCTTTAACATTCTTGGAACAAACGATTATTTCGTTACAA
GACAAGAGCCGAAAACATGTGCCTTACAGACAAAGCAAAttgacacattt
tttgaaagacTCTTTGGGTGGAAAATGCTATACAACAATGATCGGTAATA
TTTGGGGTGAAGCAGAACAACTGGAAGAAACTCTATCAACCCTTCGGTTT
GCCACAAGAGTCATGAACATTCCATCTCAACCAGCTGTCAATAGTTACCA
AGATCCTgtgaaattatgtcaaaagtACGAAAAAGAAATTACACATTTAC
GTAAAGAACTTGCTATGTACGACACCCTTACTAATCGTAACCAAGTGAAT
TACGAACCGCTCTCTGATGTTCAAGTGCAAGACATCAGACATCAAGTTCG
TAAATATCTCGATAATGATATTAGCGAGATTGAAGTATTGAATTTACGAC
AGATACAAGAGACTTTCGTACAATTCAAGTATTTCTTGGACAACATGGAG
AAGGAAGGGGAAAAAcggttgaaagaaaagtatgTGGTGATGGGAGAAAA
AAGCGTTGAATCGAATGACGCTGTTGTGGACAATGTATTGATACCAGCTG
TCGAACGTCATGGATTGGTTGGTGAAAATGATGGAACCACATTCAGTGTT
GGACGCGTCATGAATGGTGCAAAACAAGCTCATGCCTCCCCTGCTGTTGC
CGCTAGAAAGCGAAACAAGAAAGGAAAAGAGAGCACCTTAGATCAAGAAC
GGAAATGTTCCGCCAACACTGGCGTTTCCATCACAGCCAGTTACAATGCT
AATGAGACAACGAAAACGTCTGCGGAGGAGCCCAGCTCGACCTCGGTCAA
CGTTGATAAACAATCAGATGGCACTCCACCGTCGAGAGAAGAAGGATTCA
TTATGTTCAAATCGGATCAAGGCAGTTCTTTGAATAAGatatttcttgaa
aataaagaaattttacaCGAGAAGAAGTGTAGTGCCAAACATCTTACCGA
ACAAATTAATCAAACCAAACGAGATATCGATGACACCAAAGCACAACTCG
AAACTGCTCACCAAAGCAAAGagtatttaaaagaaaaaacatccgAGGGT
GAGATCATCATGGATGAGAATGAGTTTGATCTCCTCCGTACTTTGAAAAC
GTCTAAAAACATTTACCGTGAAAATTACGAGCAGCTTCAAAAAGTACGCG
CTGATATTGTGTATTGCGAAGACCTTGTCAAGCAATGCCGTCGTAAATTA
TTGACAGAGTTTGAACAATGGTATTCGGAGAGTTTCCCCACTAAAGATCA
AAAAGAGGGCGCCGCTAATAATAACACTACTGCTGAGTCGGCCAAAAATT
CACCAACCAAAAACACTTTCCAACGTTTTGAGGACGATGGtgagaaattt
gataaaatTCAAAAACAAGCTTTAATGAAGGACCCTGAATCCATTGCGTT
TTATAACGCCCGTCTACAAACAGAACGACGTAAATTGTATGGTGGAAGCG
CCCAACCAACCCAACGCCCTGGATCAGTGACATCCAGTTTACGAAACGCC
CCACCTAAAACAATGATGATCCACTCATAATCACTTTGAAAAACATTTTT
TATTTTTTGAGAATATTAAACGAATGCACATTTTATATAAAATATTTTTT
ACATTCTTTCGTTTTGAAATTTTTTACAATTTTGTGTATCAAAGCTGAAA
TAAGATTTCCAGATTCTTTAGTCATTTGACTGCTAATTGCTTATACCGCC
TCAACAATACTTTTTTTGATTGAGCAAAAATATTTTTTCAACTCCTAAAA
AGGTTTTATCTTGAAAAGTAACTCGAGAAAAATATTCACGGTATTTTTTT
TAACCtgtaatctttttcttttttcatattttgacaaaattgacATTTAA
TAACATTTAAtacctaaaatcaaaatttgtagTTTCATAATTATATCTTT
TAATCATGCATTATATAATTTCGAG
Run BLAST on NCBI

protein sequence of TCONS_00020983-protein

>TCONS_00020983-protein ID=TCONS_00020983-protein|Name=TCONS_00020983-protein|organism=Clytia hemisphaerica|type=polypeptide|length=537bp
MSKGHTQKEATYINKSLTFLEQTIISLQDKSRKHVPYRQSKLTHFLKDSL
GGKCYTTMIGNIWGEAEQLEETLSTLRFATRVMNIPSQPAVNSYQDPVKL
CQKYEKEITHLRKELAMYDTLTNRNQVNYEPLSDVQVQDIRHQVRKYLDN
DISEIEVLNLRQIQETFVQFKYFLDNMEKEGEKRLKEKYVVMGEKSVESN
DAVVDNVLIPAVERHGLVGENDGTTFSVGRVMNGAKQAHASPAVAARKRN
KKGKESTLDQERKCSANTGVSITASYNANETTKTSAEEPSSTSVNVDKQS
DGTPPSREEGFIMFKSDQGSSLNKIFLENKEILHEKKCSAKHLTEQINQT
KRDIDDTKAQLETAHQSKEYLKEKTSEGEIIMDENEFDLLRTLKTSKNIY
RENYEQLQKVRADIVYCEDLVKQCRRKLLTEFEQWYSESFPTKDQKEGAA
NNNTTAESAKNSPTKNTFQRFEDDGEKFDKIQKQALMKDPESIAFYNARL
QTERRKLYGGSAQPTQRPGSVTSSLRNAPPKTMMIHS
Run BLAST on NCBI

transcript from alignment at sc0000376:111610..116107+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020983 ID=TCONS_00020983|Name=TCONS_00020983|organism=Clytia hemisphaerica|type=transcript|length=4498bp|location=Sequence derived from alignment at sc0000376:111610..116107+ (Clytia hemisphaerica)
TAGCTaaggtaaaaaaaagattgttaTCGTTGATGGTAAGAAGGTCGTCT
ATAAAGCAATAAGTATTGCTAAAATGTCTAGCGTtctgaagattttcttt
tttcaagctcTTGATCCACTTTGActcaaaataataaaagaaaagatTAG
TCATAAACGGTGTCGGATCCGACCCCATTGGAATTCCAATGATCTGACGG
AAAATATTATCCccaaaagtgaaataaaaattcCCCATAAGATATGAGAG
GGCCTCTTTGAATATTATGAGGTTTTGTTTCGGTCAGTGGTCTAAAGCTT
GAAACCAGTTCCCGGTTATTTCCCGGCTGGTTGTGGACCACGTAAAAACA
ATCGAAAGTCTGACTGTCTAAAAGACTTAGATTACTGGCTATCTACGTAT
AATACTGAGTCTAAAACTTATGAAAGATTCAAAGCATTGATCATGTTAAG
TCAGTGACTATTTTTAAGTAATTATACTTTTTCTTCTATCAGGGTGAATC
AAACCGAATCATATCTCGCCATCAATTAAACCATTTATCATCCCGATCTC
ATTGCATCTTTACTCTACACATTGAATCACACAGTAAAACACAATCACAA
ACAAATTACATCAGGGCTAAATTCAATTTTGTCGATCTGGCTGGTTCAGA
ACGGCTTGGTAAAACAATGAGTAAGGGACACACTCAAAAAGAGGCTACAT
ACATAAATAAATCTTTAACATTCTTGGAACAAACGATTATTTCGTTACAA
GACAAGAGCCGAAAACATGTGCCTTACAGACAAAGCAAAttgacacattt
tttgaaagacTCTTTGGGTGGAAAATGCTATACAACAATGATCGGTAATA
TTTGGGGTGAAGCAGAACAACTGGAAGAAACTGTAAGTATTTGAATCGTT
TTAACCTTTGTGTATTTAACTTTTACCCATATAGATGctcaattttttac
tttttgaagttAAACAGGATCAAATGAAGTCATAGTTTGATAATAGCCTC
AGACAGTTTGGCTCCAttcgattttggaaaatcaaGATAACCAACTTCCT
TTAAATAGCTTTAATTGTTCGAAAACTGAACTGATTTACCCGCATGATTT
AAACTATTAGTAACATTGTGCTTAAAGGACTGCTGTTTTGTTAGTGTAGA
GAATTCTTATTGGATAAAGGACGAGTCTAAACACCTTCGCGGTTTTGAAG
TTTCTTATTGGTTTCTTAATCCAGTTTTGTACAGTTGCCTAGCAACTTTG
TAATAAATAAATGCTTGAATTCAAAATCAGTGGCAAGCTCGGTGTACCAT
TCTTTGTATCTTCTGAAAGGTTTTTGTATTGACTTTTTCATTTCTTACGT
TAATAATACTTTCTCGTGTGTTATCAATTTTTAATACGACTTTTCTTTCC
TCTCTCATGGTACTGAGAATGTTTTTGTTCGCCTTACCCGAGATCTGAGA
TTATATATTACAAAATTATTgttgttgaaaaatgttgttttgattctttg
atttgggaagatttcagattttttctgtGTTGCAATGTTTGGATGAGAAC
CTCTGAAATTTTATGCATTGACGTCTTATTAAGATGACTTATCCTGGTAG
AATTACTTACAATAACAAATTTGAGATTTTCACTTCAGTTTAGTCGCCTG
TTCCAGCCCCTCGAGTAGATACCAACAGtaacaaaatttgagaaaaagtc
TGCAAATTTTAGAAGAACATAGAAAGATCAAGTATTCTAAAATTAGaggt
ttttgtttttccttCTAATTACATTGTAATATAATGGTTTGGAAATTCTT
ATCTTTCAGCTATCAACCCTTCGGTTTGCCACAAGAGTCATGAACATTCC
ATCTCAACCAGCTGTCAATAGTTACCAAGATCCTgtgaaattatgtcaaa
agtACGAAAAAGAAATTACACATTTACGTAAAGAACTTGCTATGTACGAC
ACCCTTACTAATCGTAACCAAGTGAATTACGAACCGCTCTCTGATGTTCA
AGTGCAAGACATCAGACATCAAGTTCGTAAATATCTCGATAATGATATTA
GCGAGATTGAAGTATTGAATTTACGACAGATACAAGAGACTTTCGTACAA
TTCAAGTATTTCTTGGACAACATGGAGAAGGAAGGGGAAAAAcggttgaa
agaaaagtatgTGGTGATGGGAGAAAAAAGCGTTGAATCGAATGACGCTG
GTGAGTATCTCCGTCCAAATTGCTTCTTATCTTAGCAGAATTTTGAGACA
TAAACATATACTTCACGGAGacagttttgattttacttGTAGGAGTAGGT
TAAAGACTGCCAAAACTTAGACAAAACTAGTTCATTGTTCAGTGatactt
ttttagaaaagtccATATCCAGGAACACTTGGGCACCCTAGATTCAGGAT
ATATCTATCTTCCTGGCGATGGTTtacttaagtggattaattttcgagag
agattttttttcaaaataatttaatttttacgGGAGTTGTTTTCACGATC
GGCCCCTTTTCaactaattttcattttcccagtgCTTCCGGAAAAAATCT
TTGCGAGCATTAAATTTCGCTATTTATCGGAGATATTATTCTGTATTTCT
TGTTTATTGTTCCAGTTGTGGACAATGTATTGATACCAGCTGTCGAACGT
CATGGATTGGTTGGTGAAAATGATGGAACCACATTCAGTGTTGGACGCGT
CATGAATGGTGCAAAACAAGCTCATGCCTCCCCTGCTGTTGCCGCTAGAA
AGGTATCTTGCTCGCTTGTTTTGTCATATTATTTCTACATACGAATCATT
TTCATATTAAGGGGGCAAATTGAGAATCAATGTCAGAAATGTTGTTTAGC
CCAGTAATCTTTGACCAATTTTTAGTTTCCACGGGCCGAAAACAGATTTA
CTCTTCATGATACATTTCAGTGTTAACTTTTCTAGCGAAACAAGAAAGGA
AAAGAGAGCACCTTAGATCAAGAACGGAAATGTTCCGCCAACACTGGCGT
TTCCATCACAGCCAGTTACAATGCTAATGAGACAACGAAAACGTCTGCGG
AGGAGCCCAGCTCGACCTCGGTCAACGTTGATAAACAATCAGATGGCACT
CCACCGTCGAGAGAAGAAGGATTCATTATGTTCAAATCGGATCAAGGCAG
TTCTTTGAATAAGatatttcttgaaaataaagGTAATGATTGTCAGATTC
TAACTGGATATCAGTGATTTAAGTCAACAtcaaaagtttctttctttgaa
aaattcatAACTGTTGTTCGTCACCAAGTGCGTTGCTCTCGCCTCTCACc
gtattttttttcatatctactctcgggtacctaatagccgccccccccgc
taattaatttttcgaaaattttccacccaggacattcttattccaacgca
atccccccgcttattcaaatccccccggctattaggtacccgagagtatt
aaTTCACCCAATCTTGTTTTcccattttagaaattttacaCGAGAAGAAG
TGTAGTGCCAAACATCTTACCGAACAAATTAATCAAACCAAACGAGATAT
CGATGACACCAAAGCACAACTCGAAACTGCTCACCAAAGCAAAGagtatt
taaaagaaaaaacatccgAGGGTGAGATCATCATGGATGAGAATGAGTTT
GATCTCCTCCGTACTTTGAAAACGTCTAAAAACATTTACCGTGAAAATTA
CGAGCAGCTTCAAAAAGTACGCGCTGATATTGTGTATTGCGAAGACCTTG
TCAAGCAATGCCGTCGTAAATTATTGACAGAGTTTGAACAATGGTATTCG
GAGAGTTTCCCCACTAAAGATCAAAAAGAGGGCGCCGCTAATAATAACAC
TACTGCTGAGTCGGCCAAAAATTCACCAACCAAAAACACTTTCCAACGTT
TTGAGGACGATGGtgagaaatttgataaaatTCAAAAACAAGCTTTAATG
AAGGACCCTGAATCCATTGCGTTTTATAACGCCCGTCTACAAACAGAACG
ACGTAAATTGTATGGTGGAAGCGCCCAACCAACCCAACGCCCTGGATCAG
TGACATCCAGTTTACGAAACGCCCCACCTAAAACAATGATGATCCACTCA
TAATCACTTTGAAAAACATTTTTTATTTTTTGAGAATATTAAACGAATGC
ACATTTTATATAAAATATTTTTTACATTCTTTCGTTTTGAAATTTTTTAC
AATTTTGTGTATCAAAGCTGAAATAAGATTTCCAGATTCTTTAGTCATTT
GACTGCTAATTGCTTATACCGCCTCAACAATACTTTTTTTGATTGAGCAA
AAATATTTTTTCAACTCCTAAAAAGGTTTTATCTTGAAAAGTAACTCGAG
AAAAATATTCACGGTATTTTTTTTAACCtgtaatctttttcttttttcat
attttgacaaaattgacATTTAATAACATTTAAtacctaaaatcaaaatt
tgtagTTTCATAATTATATCTTTTAATCATGCATTATATAATTTCGAG

Coding sequence (CDS) from alignment at sc0000376:111610..116107+

>TCONS_00020983 ID=TCONS_00020983|Name=TCONS_00020983|organism=Clytia hemisphaerica|type=CDS|length=8070bp|location=Sequence derived from alignment at sc0000376:111610..116107+ (Clytia hemisphaerica)
ATGAGTAAGGGACACACTCAAAAAGAGGCTACATACATAAATAAATCTTT
AACATTCTTGGAACAAACGATTATTTCGTTACAAGACAAGAGCCGAAAAC
ATGTGCCTTACAGACAAAGCAAAttgacacattttttgaaagacTCTTTG
GGTGGAAAATGCTATACAACAATGATCGGTAATATTTGGGGTGAAGCAGA
ACAACTGGAAGAAACTCTATCAACCCTTCGGTTTGCCACAAGAGTCATGA
ACATTCCATCTCAACCAGCTGTCAATAGTTACCAAGATCCTgtgaaatta
tgtcaaaagtACGAAAAAGAAATTACACATTTACGTAAAGAACTTGCTAT
GTACGACACCCTTACTAATCGTAACCAAGTGAATTACGAACCGCTCTCTG
ATGTTCAAGTGCAAGACATCAGACATCAAGTTCGTAAATATCTCGATAAT
GATATTAGCGAGATTGAAGTATTGAATTTACGACAGATACAAGAGACTTT
CGTACAATTCAAGTATTTCTTGGACAACATGGAGAAGGAAGGGGAAAAAc
ggttgaaagaaaagtatgTGGTGATGGGAGAAAAAAGCGTTGAATCGAAT
GACGCTGTTGTGGACAATGTATTGATACCAGCTGTCGAACGTCATGGATT
GGTTGGTGAAAATGATGGAACCACATTCAGTGTTGGACGCGTCATGAATG
GTGCAAAACAAGCTCATGCCTCCCCTGCTGTTGCCGCTAGAAAGCGAAAC
AAGAAAGGAAAAGAGAGCACCTTAGATCAAGAACGGAAATGTTCCGCCAA
CACTGGCGTTTCCATCACAGCCAGTTACAATGCTAATGAGACAACGAAAA
CGTCTGCGGAGGAGCCCAGCTCGACCTCGGTCAACGTTGATAAACAATCA
GATGGCACTCCACCGTCGAGAGAAGAAGGATTCATTATGTTCAAATCGGA
TCAAGGCAGTTCTTTGAATAAGatatttcttgaaaataaagaaattttac
aCGAGAAGAAGTGTAGTGCCAAACATCTTACCGAACAAATTAATCAAACC
AAACGAGATATCGATGACACCAAAGCACAACTCGAAACTGCTCACCAAAG
CAAAGagtatttaaaagaaaaaacatccgAGGGTGAGATCATCATGGATG
AGAATGAGTTTGATCTCCTCCGTACTTTGAAAACGTCTAAAAACATTTAC
CGTGAAAATTACGAGCAGCTTCAAAAAGTACGCGCTGATATTGTGTATTG
CGAAGACCTTGTCAAGCAATGCCGTCGTAAATTATTGACAGAGTTTGAAC
AATGGTATTCGGAGAGTTTCCCCACTAAAGATCAAAAAGAGGGCGCCGCT
AATAATAACACTACTGCTGAGTCGGCCAAAAATTCACCAACCAAAAACAC
TTTCCAACGTTTTGAGGACGATGGtgagaaatttgataaaatTCAAAAAC
AAGCTTTAATGAAGGACCCTGAATCCATTGCGTTTTATAACGCCCGTCTA
CAAACAGAACGACGTAAATTGTATGGTGGAAGCGCCCAACCAACCCAACG
CCCTGGATCAGTGACATCCAGTTTACGAAACGCCCCACCTAAAACAATGA
TGATCCACTCATAAATGAGTAAGGGACACACTCAAAAAGAGGCTACATAC
ATAAATAAATCTTTAACATTCTTGGAACAAACGATTATTTCGTTACAAGA
CAAGAGCCGAAAACATGTGCCTTACAGACAAAGCAAAttgacacattttt
tgaaagacTCTTTGGGTGGAAAATGCTATACAACAATGATCGGTAATATT
TGGGGTGAAGCAGAACAACTGGAAGAAACTCTATCAACCCTTCGGTTTGC
CACAAGAGTCATGAACATTCCATCTCAACCAGCTGTCAATAGTTACCAAG
ATCCTgtgaaattatgtcaaaagtACGAAAAAGAAATTACACATTTACGT
AAAGAACTTGCTATGTACGACACCCTTACTAATCGTAACCAAGTGAATTA
CGAACCGCTCTCTGATGTTCAAGTGCAAGACATCAGACATCAAGTTCGTA
AATATCTCGATAATGATATTAGCGAGATTGAAGTATTGAATTTACGACAG
ATACAAGAGACTTTCGTACAATTCAAGTATTTCTTGGACAACATGGAGAA
GGAAGGGGAAAAAcggttgaaagaaaagtatgTGGTGATGGGAGAAAAAA
GCGTTGAATCGAATGACGCTGTTGTGGACAATGTATTGATACCAGCTGTC
GAACGTCATGGATTGGTTGGTGAAAATGATGGAACCACATTCAGTGTTGG
ACGCGTCATGAATGGTGCAAAACAAGCTCATGCCTCCCCTGCTGTTGCCG
CTAGAAAGCGAAACAAGAAAGGAAAAGAGAGCACCTTAGATCAAGAACGG
AAATGTTCCGCCAACACTGGCGTTTCCATCACAGCCAGTTACAATGCTAA
TGAGACAACGAAAACGTCTGCGGAGGAGCCCAGCTCGACCTCGGTCAACG
TTGATAAACAATCAGATGGCACTCCACCGTCGAGAGAAGAAGGATTCATT
ATGTTCAAATCGGATCAAGGCAGTTCTTTGAATAAGatatttcttgaaaa
taaagaaattttacaCGAGAAGAAGTGTAGTGCCAAACATCTTACCGAAC
AAATTAATCAAACCAAACGAGATATCGATGACACCAAAGCACAACTCGAA
ACTGCTCACCAAAGCAAAGagtatttaaaagaaaaaacatccgAGGGTGA
GATCATCATGGATGAGAATGAGTTTGATCTCCTCCGTACTTTGAAAACGT
CTAAAAACATTTACCGTGAAAATTACGAGCAGCTTCAAAAAGTACGCGCT
GATATTGTGTATTGCGAAGACCTTGTCAAGCAATGCCGTCGTAAATTATT
GACAGAGTTTGAACAATGGTATTCGGAGAGTTTCCCCACTAAAGATCAAA
AAGAGGGCGCCGCTAATAATAACACTACTGCTGAGTCGGCCAAAAATTCA
CCAACCAAAAACACTTTCCAACGTTTTGAGGACGATGGtgagaaatttga
taaaatTCAAAAACAAGCTTTAATGAAGGACCCTGAATCCATTGCGTTTT
ATAACGCCCGTCTACAAACAGAACGACGTAAATTGTATGGTGGAAGCGCC
CAACCAACCCAACGCCCTGGATCAGTGACATCCAGTTTACGAAACGCCCC
ACCTAAAACAATGATGATCCACTCATAAATGAGTAAGGGACACACTCAAA
AAGAGGCTACATACATAAATAAATCTTTAACATTCTTGGAACAAACGATT
ATTTCGTTACAAGACAAGAGCCGAAAACATGTGCCTTACAGACAAAGCAA
AttgacacattttttgaaagacTCTTTGGGTGGAAAATGCTATACAACAA
TGATCGGTAATATTTGGGGTGAAGCAGAACAACTGGAAGAAACTCTATCA
ACCCTTCGGTTTGCCACAAGAGTCATGAACATTCCATCTCAACCAGCTGT
CAATAGTTACCAAGATCCTgtgaaattatgtcaaaagtACGAAAAAGAAA
TTACACATTTACGTAAAGAACTTGCTATGTACGACACCCTTACTAATCGT
AACCAAGTGAATTACGAACCGCTCTCTGATGTTCAAGTGCAAGACATCAG
ACATCAAGTTCGTAAATATCTCGATAATGATATTAGCGAGATTGAAGTAT
TGAATTTACGACAGATACAAGAGACTTTCGTACAATTCAAGTATTTCTTG
GACAACATGGAGAAGGAAGGGGAAAAAcggttgaaagaaaagtatgTGGT
GATGGGAGAAAAAAGCGTTGAATCGAATGACGCTGTTGTGGACAATGTAT
TGATACCAGCTGTCGAACGTCATGGATTGGTTGGTGAAAATGATGGAACC
ACATTCAGTGTTGGACGCGTCATGAATGGTGCAAAACAAGCTCATGCCTC
CCCTGCTGTTGCCGCTAGAAAGCGAAACAAGAAAGGAAAAGAGAGCACCT
TAGATCAAGAACGGAAATGTTCCGCCAACACTGGCGTTTCCATCACAGCC
AGTTACAATGCTAATGAGACAACGAAAACGTCTGCGGAGGAGCCCAGCTC
GACCTCGGTCAACGTTGATAAACAATCAGATGGCACTCCACCGTCGAGAG
AAGAAGGATTCATTATGTTCAAATCGGATCAAGGCAGTTCTTTGAATAAG
atatttcttgaaaataaagaaattttacaCGAGAAGAAGTGTAGTGCCAA
ACATCTTACCGAACAAATTAATCAAACCAAACGAGATATCGATGACACCA
AAGCACAACTCGAAACTGCTCACCAAAGCAAAGagtatttaaaagaaaaa
acatccgAGGGTGAGATCATCATGGATGAGAATGAGTTTGATCTCCTCCG
TACTTTGAAAACGTCTAAAAACATTTACCGTGAAAATTACGAGCAGCTTC
AAAAAGTACGCGCTGATATTGTGTATTGCGAAGACCTTGTCAAGCAATGC
CGTCGTAAATTATTGACAGAGTTTGAACAATGGTATTCGGAGAGTTTCCC
CACTAAAGATCAAAAAGAGGGCGCCGCTAATAATAACACTACTGCTGAGT
CGGCCAAAAATTCACCAACCAAAAACACTTTCCAACGTTTTGAGGACGAT
GGtgagaaatttgataaaatTCAAAAACAAGCTTTAATGAAGGACCCTGA
ATCCATTGCGTTTTATAACGCCCGTCTACAAACAGAACGACGTAAATTGT
ATGGTGGAAGCGCCCAACCAACCCAACGCCCTGGATCAGTGACATCCAGT
TTACGAAACGCCCCACCTAAAACAATGATGATCCACTCATAAATGAGTAA
GGGACACACTCAAAAAGAGGCTACATACATAAATAAATCTTTAACATTCT
TGGAACAAACGATTATTTCGTTACAAGACAAGAGCCGAAAACATGTGCCT
TACAGACAAAGCAAAttgacacattttttgaaagacTCTTTGGGTGGAAA
ATGCTATACAACAATGATCGGTAATATTTGGGGTGAAGCAGAACAACTGG
AAGAAACTCTATCAACCCTTCGGTTTGCCACAAGAGTCATGAACATTCCA
TCTCAACCAGCTGTCAATAGTTACCAAGATCCTgtgaaattatgtcaaaa
gtACGAAAAAGAAATTACACATTTACGTAAAGAACTTGCTATGTACGACA
CCCTTACTAATCGTAACCAAGTGAATTACGAACCGCTCTCTGATGTTCAA
GTGCAAGACATCAGACATCAAGTTCGTAAATATCTCGATAATGATATTAG
CGAGATTGAAGTATTGAATTTACGACAGATACAAGAGACTTTCGTACAAT
TCAAGTATTTCTTGGACAACATGGAGAAGGAAGGGGAAAAAcggttgaaa
gaaaagtatgTGGTGATGGGAGAAAAAAGCGTTGAATCGAATGACGCTGT
TGTGGACAATGTATTGATACCAGCTGTCGAACGTCATGGATTGGTTGGTG
AAAATGATGGAACCACATTCAGTGTTGGACGCGTCATGAATGGTGCAAAA
CAAGCTCATGCCTCCCCTGCTGTTGCCGCTAGAAAGCGAAACAAGAAAGG
AAAAGAGAGCACCTTAGATCAAGAACGGAAATGTTCCGCCAACACTGGCG
TTTCCATCACAGCCAGTTACAATGCTAATGAGACAACGAAAACGTCTGCG
GAGGAGCCCAGCTCGACCTCGGTCAACGTTGATAAACAATCAGATGGCAC
TCCACCGTCGAGAGAAGAAGGATTCATTATGTTCAAATCGGATCAAGGCA
GTTCTTTGAATAAGatatttcttgaaaataaagaaattttacaCGAGAAG
AAGTGTAGTGCCAAACATCTTACCGAACAAATTAATCAAACCAAACGAGA
TATCGATGACACCAAAGCACAACTCGAAACTGCTCACCAAAGCAAAGagt
atttaaaagaaaaaacatccgAGGGTGAGATCATCATGGATGAGAATGAG
TTTGATCTCCTCCGTACTTTGAAAACGTCTAAAAACATTTACCGTGAAAA
TTACGAGCAGCTTCAAAAAGTACGCGCTGATATTGTGTATTGCGAAGACC
TTGTCAAGCAATGCCGTCGTAAATTATTGACAGAGTTTGAACAATGGTAT
TCGGAGAGTTTCCCCACTAAAGATCAAAAAGAGGGCGCCGCTAATAATAA
CACTACTGCTGAGTCGGCCAAAAATTCACCAACCAAAAACACTTTCCAAC
GTTTTGAGGACGATGGtgagaaatttgataaaatTCAAAAACAAGCTTTA
ATGAAGGACCCTGAATCCATTGCGTTTTATAACGCCCGTCTACAAACAGA
ACGACGTAAATTGTATGGTGGAAGCGCCCAACCAACCCAACGCCCTGGAT
CAGTGACATCCAGTTTACGAAACGCCCCACCTAAAACAATGATGATCCAC
TCATAAATGAGTAAGGGACACACTCAAAAAGAGGCTACATACATAAATAA
ATCTTTAACATTCTTGGAACAAACGATTATTTCGTTACAAGACAAGAGCC
GAAAACATGTGCCTTACAGACAAAGCAAAttgacacattttttgaaagac
TCTTTGGGTGGAAAATGCTATACAACAATGATCGGTAATATTTGGGGTGA
AGCAGAACAACTGGAAGAAACTCTATCAACCCTTCGGTTTGCCACAAGAG
TCATGAACATTCCATCTCAACCAGCTGTCAATAGTTACCAAGATCCTgtg
aaattatgtcaaaagtACGAAAAAGAAATTACACATTTACGTAAAGAACT
TGCTATGTACGACACCCTTACTAATCGTAACCAAGTGAATTACGAACCGC
TCTCTGATGTTCAAGTGCAAGACATCAGACATCAAGTTCGTAAATATCTC
GATAATGATATTAGCGAGATTGAAGTATTGAATTTACGACAGATACAAGA
GACTTTCGTACAATTCAAGTATTTCTTGGACAACATGGAGAAGGAAGGGG
AAAAAcggttgaaagaaaagtatgTGGTGATGGGAGAAAAAAGCGTTGAA
TCGAATGACGCTGTTGTGGACAATGTATTGATACCAGCTGTCGAACGTCA
TGGATTGGTTGGTGAAAATGATGGAACCACATTCAGTGTTGGACGCGTCA
TGAATGGTGCAAAACAAGCTCATGCCTCCCCTGCTGTTGCCGCTAGAAAG
CGAAACAAGAAAGGAAAAGAGAGCACCTTAGATCAAGAACGGAAATGTTC
CGCCAACACTGGCGTTTCCATCACAGCCAGTTACAATGCTAATGAGACAA
CGAAAACGTCTGCGGAGGAGCCCAGCTCGACCTCGGTCAACGTTGATAAA
CAATCAGATGGCACTCCACCGTCGAGAGAAGAAGGATTCATTATGTTCAA
ATCGGATCAAGGCAGTTCTTTGAATAAGatatttcttgaaaataaagaaa
ttttacaCGAGAAGAAGTGTAGTGCCAAACATCTTACCGAACAAATTAAT
CAAACCAAACGAGATATCGATGACACCAAAGCACAACTCGAAACTGCTCA
CCAAAGCAAAGagtatttaaaagaaaaaacatccgAGGGTGAGATCATCA
TGGATGAGAATGAGTTTGATCTCCTCCGTACTTTGAAAACGTCTAAAAAC
ATTTACCGTGAAAATTACGAGCAGCTTCAAAAAGTACGCGCTGATATTGT
GTATTGCGAAGACCTTGTCAAGCAATGCCGTCGTAAATTATTGACAGAGT
TTGAACAATGGTATTCGGAGAGTTTCCCCACTAAAGATCAAAAAGAGGGC
GCCGCTAATAATAACACTACTGCTGAGTCGGCCAAAAATTCACCAACCAA
AAACACTTTCCAACGTTTTGAGGACGATGGtgagaaatttgataaaatTC
AAAAACAAGCTTTAATGAAGGACCCTGAATCCATTGCGTTTTATAACGCC
CGTCTACAAACAGAACGACGTAAATTGTATGGTGGAAGCGCCCAACCAAC
CCAACGCCCTGGATCAGTGACATCCAGTTTACGAAACGCCCCACCTAAAA
CAATGATGATCCACTCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011768XLOC_011768Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020983-exon-sc0000376-1491911889:111610..112491TCONS_00020983-exon-sc0000376-1491911889:111610..112491Clytia hemisphaericaexon
TCONS_00020983-exon-sc0000376-1510915933:111610..112491TCONS_00020983-exon-sc0000376-1510915933:111610..112491Clytia hemisphaericaexon
TCONS_00020983-exon-sc0000376-1575043694:111610..112491TCONS_00020983-exon-sc0000376-1575043694:111610..112491Clytia hemisphaericaexon
TCONS_00020983-exon-sc0000376-1491911889:113419..113809TCONS_00020983-exon-sc0000376-1491911889:113419..113809Clytia hemisphaericaexon
TCONS_00020983-exon-sc0000376-1510915933:113419..113809TCONS_00020983-exon-sc0000376-1510915933:113419..113809Clytia hemisphaericaexon
TCONS_00020983-exon-sc0000376-1575043694:113419..113809TCONS_00020983-exon-sc0000376-1575043694:113419..113809Clytia hemisphaericaexon
TCONS_00020983-exon-sc0000376-1491911889:114225..114361TCONS_00020983-exon-sc0000376-1491911889:114225..114361Clytia hemisphaericaexon
TCONS_00020983-exon-sc0000376-1510915933:114225..114361TCONS_00020983-exon-sc0000376-1510915933:114225..114361Clytia hemisphaericaexon
TCONS_00020983-exon-sc0000376-1575043694:114225..114361TCONS_00020983-exon-sc0000376-1575043694:114225..114361Clytia hemisphaericaexon
TCONS_00020983-exon-sc0000376-1491911889:114545..114791TCONS_00020983-exon-sc0000376-1491911889:114545..114791Clytia hemisphaericaexon
TCONS_00020983-exon-sc0000376-1510915933:114545..114791TCONS_00020983-exon-sc0000376-1510915933:114545..114791Clytia hemisphaericaexon
TCONS_00020983-exon-sc0000376-1575043694:114545..114791TCONS_00020983-exon-sc0000376-1575043694:114545..114791Clytia hemisphaericaexon
TCONS_00020983-exon-sc0000376-1491911889:115090..116107TCONS_00020983-exon-sc0000376-1491911889:115090..116107Clytia hemisphaericaexon
TCONS_00020983-exon-sc0000376-1510915933:115090..116107TCONS_00020983-exon-sc0000376-1510915933:115090..116107Clytia hemisphaericaexon
TCONS_00020983-exon-sc0000376-1575043694:115090..116107TCONS_00020983-exon-sc0000376-1575043694:115090..116107Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020983-proteinTCONS_00020983-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000376supercontigsc0000376:111610..116107 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.5599	10.2414	4.83796	3.85667	98.6364	74.0037	37.1224	37.5934	17.8215	24.4624	21.4409	23.695	2.06673	2.57359	1.32342	2.42843	1.53361	2.1586	2.66106	2.64057	2.87936	3.37882	6.84566	5.71381	16.0179	13.2066	7.23985	9.07397	2.61878	2.63559
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001752Kinesin_motor_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0003777microtubule motor activity
GO:0008017microtubule binding
Vocabulary: Biological Process
TermDefinition
GO:0007018microtubule-based movement
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007018 microtubule-based movement
molecular_function GO:0005524 ATP binding
molecular_function GO:0008017 microtubule binding
molecular_function GO:0003777 microtubule motor activity
Blast
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BLAST of TCONS_00020983 vs. Swiss-Prot (Human)
Match: KIF9 (Kinesin-like protein KIF9 OS=Homo sapiens GN=KIF9 PE=1 SV=4)

HSP 1 Score: 423.705 bits (1088), Expect = 5.621e-134
Identity = 240/590 (40.68%), Postives = 360/590 (61.02%), Query Frame = 1 
Query:  475 YFFFYQGESNRIISRHQLNHLSSRSHCIFTLHIESHSKTQSQTNYIRAKFNFVDLAGSERLGKTMSKGHTQKEATYINKSLTFLEQTIISLQDKSRKHVPYRQSKLTHFLKDSLGGKCYTTMIGNIWGEAEQLEETLSTLRFATRVMNIPSQPAVNSYQDPVKLCQKYEKEITHLRKELAMYDTLTNRNQVNYEPLSDVQVQDIRHQVRKYLDNDISEIEVLNLRQIQETFVQFKYFLDNMEKEGEKRLKEKYVVMGEKSVESNDAVVDNVLIPAVERHGLVGENDGTTFSVG--------RVMNGAKQAHASP-AVAARKRNKKGKESTLDQERKCSANTGVSITASYNAN------ETTKTSAEEP---SSTSVNVDKQSDGTPPSREEGFIMFKSDQGSSLNKIFLENKEILHEKKCSAKHLTEQINQTKRDIDDTKAQLETAHQSKEYLKEKTSEGEIIMDENEFDLLRTLKTSKNIYRENYEQLQKVRADIVYCEDLVKQCRRKLLTEFEQWYSESFPTKDQKEGAANNNTTAESAKNSPTKNTFQRFEDDGEKFDKIQKQALMKDPESIAFYNARLQTERRKLY 2190
            +   ++GE+NRII+ H +N  SSRSHCIFT+++E+HS+T S+  YI +K N VDLAGSERLGK+ S+G   KEATYINKSL+FLEQ II+L D+ R H+P+RQ KLTH LKDSLGG C   ++ NI+GEA QLEETLS+LRFA+R+  + ++PA+N   D  ++ +  EKE+  L++ELA++D+LTNR  V Y+P+ ++Q+ +I  QVR+YL+  + EI++++LRQI+E F QF+  L   E+E E  L+ KY ++      +  A+    L+  V+ H LVGE +G  F +G             +K+    P +  ARK       +  D +   ++ T + + +S + +         +TS+ EP    S    +      TPPS+   F  FK++QGS +N+IF ENK IL+E++  A   T+ IN  KR+ID TK  L      +E   +  ++G +I+DE EF L+  LK  K  YR  Y+ L+ +RA+I YC+ LV QCR +LL EF+ WY+ESF   +  + A     +       P        EDD +KF ++Q++ L + P+SI+FYNA+++ E++  Y
Sbjct:  192 FSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLVTTEPAINEKYDAERMVKNLEKELALLKQELAIHDSLTNRTFVTYDPMDEIQIAEINSQVRRYLEGTLDEIDIISLRQIKEVFNQFRVVLSQQEQEVESTLRRKYTLIDRNDFAAISAIQKAGLV-DVDGH-LVGEPEGQNFGLGVAPFSTKPGKKAKSKKTFKEPLSSLARKEGASSPVNGKDLDYVSTSKTQL-VPSSKDGDVKDMLSRDRETSSIEPLPSDSPKEELRPIRPDTPPSKPVAFEEFKNEQGSEINRIFKENKSILNERRKRASETTQHINAIKREIDVTKEALNFQKSLREKQGKYENKGLMIIDEEEFLLILKLKDLKKQYRSEYQDLRDLRAEIQYCQHLVDQCRHRLLMEFDIWYNESFVIPEDMQMALKPGGSIRPGM-VPVNRIVSLGEDDQDKFSQLQQRVLPEGPDSISFYNAKVKIEQKHNY 777
The following BLAST results are available for this feature:
BLAST of TCONS_00020983 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KIF95.621e-13440.68Kinesin-like protein KIF9 OS=Homo sapiens GN=KIF9 ... [more]
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