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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020974 ID=TCONS_00020974|Name=TCONS_00020974|organism=Clytia hemisphaerica|type=transcript|length=2980bp
CGTAAACATGTTTAATGCTCAATAAGTATTTAACCCTTTTCGTACTAGCA
GAGATTTAGGGAAAGAGGATAGGTTTTCTCATTGTTGGCCATTGAATTCG
GCGCCGTCTGAAGTCGCTAGGCTAGCCAACAACTTGGCCAAGAAGGTGCA
GTGAAAAAAAAATGGCGTTATGTGCAGTATCATAAGATTTCAAGCAAAAC
TGCCCGAATTCACTCCTTTGGAGGGCCTCCTACTAAAAtaaacaagaaag
cctaagcggcGTTAAGGACCATCAGTTTTGTTGGTAGTGTTAATGACTTT
TTCCGTTGCAGAGTCACCATACACATACAACTTAATATACAGGAGTGAAT
TATTATAATTACCAAttatatgtcgttatgacgtttcaagttgtgAGAAA
AATGCAAAAGATGTGACTTTTtggcaaattaaaaaaaaaattgaatcgaC
CGTTCGTCAAAATCAGTTctcaccaaaaaaagttcccttaaggtactagT
TTCATTAAAACCTATCCCTGCTCTGACTGCCACAAGTGTGCAATTAGTAG
ATACTGGACAAGAAAATTGGATTGCGATCGCACAACAAATGGCCAAACTG
AGGAATTTTCGAAACTACATTTTCGAAATCATTTTTTCTTAGGAATTCAT
attaaaggtttcatttttacataagtgtttccgtttcatatcagacacat
atttcatatcaggacattgtcttgctattgttatatcatgctgatgtaag
caaaaaaaatgtttttcttttcctttttctgaccaatcttggtCCACATC
CGTGTCATATCAATGtggaaaagcttgtgaattaaaaatgatgagtaagc
aaacgataccactcttatttaaaaacaaaacctttaaactaaCGCCTTTT
ttagggagtttctaaacatcgaccagaaatggcgaccacgacccgCGACC
ACGACCCGCGACCAGATAATTTTGGCTTATCGAGTTTACCtactctctcc
accgtagagactTTATGTagatcaatttcttttttttattttctttcaat
tagGTGATGAATGAGTCTTTTGTAATGAAGTCACCAGTCTTCTAAAAATG
TGCAGCACGTGCGCACTCAcgcgttttaattttttttattttgcaaaaCA
TTACATATGAACATTATGAAGTGAAAAGACGATGGATGAACATTTTAGCA
TTGGTAGTGATATCAGCGATATCATTGGTACTGATGATTCCGGAGAAAGT
GATGGTTATGAAAGTGAATCGATATGTTCAAATCATTCAACTCGTAAAAC
GTCGACACCGGCGACAAAAGTGGAAGAGTATGAAACGGATACAATCAAGT
CTACGCATGAATCGAAAAATGCAGTTTCAGTAACTGGAATCAAAGATGAC
CCGTCATCTCTCATTGAGTTGTACAGAAAAGTAGTTTCTGGTGATATTGA
AGAACAGCATATCAATAAACACATTCCATGGCATGCCGACCAATCAGCTA
CGTTCATTGTTGACCTCGAGGGTGTCAAAGACCGAAGAGACGCCCTTGTT
GATGCTTGGCACTAGAAGGATTCGAAAACCTATCGTAGCTACTCACTATC
AATCGAAGATCCTTTCAGCCCTACAATGCAAAATGAAATCGAAGACAAAT
TTATTTGTTTCACGAAACGCTCTTGGACATGTAAGACTTTTccttctttg
aagaaagttatCGCATGCTTCTACAAACCTAGTTTGAGTTTCGCAACACC
AGCAAACCCACTTCAAAACGCCAACAGATACATCATTATCCAATACAACT
ACAAAACAGCATCAGCATCAGCGGAACCAAGTCAAAAAGTCAGAGTGTAT
CCGAGTGTGAAatcaaaagtcaaagaaaagttATCCAGTGGGAAAGGTCC
GAAAAAAGCCGTTTATGAAGTACAAAAGGAAGTGGGTGGAATCGAAAATA
TGTCCAACGCCAGTGAAGTACCAGTTTTGAAAACAGCATATAACCAATCG
TTTGGACTGCGACAAGAGAAGAGACATCAACCACATGGTAAATTGAGAGA
TCCACTCCTCCAATTGATCGAAAAGCAGCACGAAGATGGAAAGTTAAACC
ATCCAGTAATCAGGCGTGTTATGACAGATGAAATTTCATTCACTGTAACA
TTATTCAATAAAAGAATTGTGAACAACATTGCCAACTTTTGCTGCACGAC
AGATGAAAACTTTAAGTCACCACTGAGACAAGATTTTACTTTCGAATTAT
TCGAAAATCCTCCATGCTATGCACTTGTTCAATCATACAGTAACACTTCT
CTGATCACGAAACGTCACAAGAAGAGCCCGGAGCTTCTTGGTCCAGTCCA
GATAACACACTTTAAGAACGAAAAGGTGGTAAAGCTTTTATTTGATACGC
TCCTCTCAGAATGTCCGGGACTTGCCCTACATGTAAAAGTTATCGGCGCT
GACGGAGAAAAAAGCATAACCAACCAGGCGTTACAAGCCTTCCCAAGTTC
ACTGTTGCTCATCTGTAGACGCCACATCGAGACAAATATCCAAGAGCAAA
TCAAGGGATTGAGCGCCATTAAGAAGGATCAAATTATGACGGACATATTT
GGTTCCTCGTTCCAATCTGGCCTTATTGATGCAACAAGTTTCAATGAATA
TGATGAAGCACTCAAGTCCATGATGAAAAAATGGACTTCAGGTAAGAACT
TGAATCTAGTCCCGTGAAAGTGTTTAGTTTGGTAGCCAGGAATGTGAGCC
CTCTCATTTGGTCTCCTAACTGGTTTGCTTCTATTGTCCAAGTACCTAAT
TCAAAACTCCGGGTACTCTATTTAAAAGGCTGTCATTCCTGTCAATGTTT
ACAATCctacaatccttcaagaaatacttgagacaaatgggaaattcccc
aggaagttttgaaaccacaatcgatttgtaagtgctctaaagtaggttcg
aagggtagagttttaactctgagttttaac Run BLAST on NCBI protein sequence of TCONS_00020974-protein >TCONS_00020974-protein ID=TCONS_00020974-protein|Name=TCONS_00020974-protein|organism=Clytia hemisphaerica|type=polypeptide|length=363bp
MQNEIEDKFICFTKRSWTCKTFPSLKKVIACFYKPSLSFATPANPLQNAN
RYIIIQYNYKTASASAEPSQKVRVYPSVKSKVKEKLSSGKGPKKAVYEVQ
KEVGGIENMSNASEVPVLKTAYNQSFGLRQEKRHQPHGKLRDPLLQLIEK
QHEDGKLNHPVIRRVMTDEISFTVTLFNKRIVNNIANFCCTTDENFKSPL
RQDFTFELFENPPCYALVQSYSNTSLITKRHKKSPELLGPVQITHFKNEK
VVKLLFDTLLSECPGLALHVKVIGADGEKSITNQALQAFPSSLLLICRRH
IETNIQEQIKGLSAIKKDQIMTDIFGSSFQSGLIDATSFNEYDEALKSMM
KKWTSGKNLNLVP Run BLAST on NCBI transcript from alignment at sc0000376:15895..22118+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020974 ID=TCONS_00020974|Name=TCONS_00020974|organism=Clytia hemisphaerica|type=transcript|length=6224bp|location=Sequence derived from alignment at sc0000376:15895..22118+ (Clytia hemisphaerica)
CGTAAACATGTTTAATGCTCAATAAGTATTTAACCCTTTTCGTACTAGCA
GAGATTTAGGGAAAGAGGATAGGTTTTCTCATTGTTGGCCATTGAATTCG
GCGCCGTCTGAAGTCGCTAGGCTAGCCAACAACTTGGCCAAGAAGGTGCA
GTGAAAAAAAAATGGCGTTATGTGCAGTATCATAAGATTTCAAGCAAAAC
TGCCCGAATTCACTCCTTTGGAGGGCCTCCTACTAAAAtaaacaagaaag
cctaagcggcGTTAAGGACCATCAGTTTTGTTGGTAGTGTTAATGACTTT
TTCCGTTGCAGAGTCACCATACACATACAACTTAATATACAGGAGTGAAT
TATTATAATTACCAAttatatgtcgttatgacgtttcaagttgtgAGAAA
AATGCAAAAGATGTGACTTTTtggcaaattaaaaaaaaaattgaatcgaC
CGTTCGTCAAAATCAGTTctcaccaaaaaaagttcccttaaggtactagT
TTCATTAAAACCTATCCCTGCTCTGACTGCCACAAGTGTGCAATTAGTAG
ATACTGGACAAGAAAATTGGATTGCGATCGCACAACAAATGGCCAAACTG
AGGAATTTTCGAAACTACATTTTCGAAATCATTTTTTCTTAGGAATTCAT
attaaaggtttcatttttacataagtgtttccgtttcatatcagacacat
atttcatatcaggacattgtcttgctattgttatatcatgctgatgtaag
caaaaaaaatgtttttcttttcctttttctgaccaatcttggtCCACATC
CGTGTCATATCAATGtggaaaagcttgtgaattaaaaatgatgagtaagc
aaacgataccactcttatttaaaaacaaaacctttaaactaaCGCCTTTT
ttagggagtttctaaacatcgaccagaaatggcgaccacgacccgCGACC
ACGACCCGCGACCAGATAATTTTGGCTTATCGAGTTTACCtactctctcc
accgtagagactTTATGTagatcaatttcttttttttattttctttcaat
tagGTGATGAATGAGTCTTTTGTAATGAAGTCACCAGTCTTCTAAAAATG
TGCAGCACGTGCGCACTCAcgcgttttaattttttttattttgcaaaaCA
TTACATATGAACATTATGAAGTGAAAAGACGATGGATGAACATTTTAGCA
TTGGTAGTGGTAAGTGAAGATTTTTTCAATTGTTATTCCAAAAATCAGAG
TTCTTTCTATAAGAATAGTCTCTCCGAAATCTTCGGCCCTTATTCCTGGC
CTTTTCCGGATTCTTCCCTGGTGGCTATAAAACCTCATACTTACAACCGT
TAAAATAAgagccccttattttgctctaaatatccTGAATTTAGTTATAA
TTTAGTCTATTACTAAGCATCTGAAACTATCTATGATAGACATGATATAA
GTTTGAGGAATtagcttcattttctttttctgaaaatatgGAGGGTTGAT
ATATATTTGCTGATTTTGTGTTAAGGTGCCGAATAAATGGGTCCCCTCCA
CTTAatctgtttttaaaaaaaatttgggtacCAGGCTCTTGTTCTCATTC
TTTAGTATTCAAAAGTCGATAAAAACCAATACTGGACTGGAGACGAACTT
GGTTTTATGGAAGCTTAAAACTGACTGACGTCAGTAAAAACCGACATGCT
ACTAACATAAAAAATGGAGCCGTATAAACTAGTACTCAACCCCCTTTTTA
CGAGGTTCAGGCTATTCAAGAGTATTAGTATTTAGTATTTGCCTTGAATT
TGAAATAATATCATTCCATATAATATTTATTCCATCTTAGATATCAGCGA
TATCATTGGTACTGATGATTCCGGAGAAAGTGATGGTTATGAAAGTGAAT
CGATATGTTCAAATCATTCAACTCGTAAAACGTATGTAAATTTTCTGGTA
ATTGCTTTCTAATTATGTAAAACATaagggggggtactagggtttgATGA
GAAATATGTGCGgacgaaaaccgacccttagtccctagagagactgattt
ttgctgaaaaggtgaccctttgagagacttctttaaaaaattttcttcga
ttttttaacatttttttcacttaaaataaaaaaaatctcctaaaatcgtg
attttccgacccttagagagacttagAAGGGTGAAGAAACCGACCCTTAC
GCAcctacccagcacccatttttgcctaagtatcctcaactcgaaatttc
cataacaCGGAAATGGTGTTCGACCAACCTTGAATGTTGTTTGATCGACT
CGACTTTGATTGTTAATCGATTGACTTGATCGTTGCTCGACCACCTAGAT
TGATGTTGAATCAATTTTGATCGATGTTTTTTTCTGCTAACTGCTTGCAG
GGCTTTTGATTTTGGAGAGGGACAATTTGAGCACTTTCAGTAAACCTGAG
TGAGCTTCAATTGAATAAGTCAATGTAATCGAATCGAATCTAAACTAATC
CAATCAATACGAAAAGTGTAATTTCTATCGAAGTTGGATTGATTCGGTCA
ATCTAATACTAAtagttcgattggtttcgattgtagttcgattgatattc
gattaacCTCAATTCAATGCTGTTTGATCAGTTATTGTTTGAATGATATT
cgaatcgtttttttttttttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNgctttctctaagaaagtgtgaccagtaaaag
aataacaaaatttgattggctatgttttcaaccgttattaggatctgaga
aattcaaactcccagcccgtaccatgctatatatttcgccatcagtttat
caaagaagaaatcatagcatggattcccaggctaaacTAAGGCgtgccaa
agcggaaataaatactatctttttaaaatgacgctttctttgtaacgttt
atttatttatgtATTCGTCCCCCATGAGAGGGGGGACTCGCatatcagcc
aacaccagggtattctctgacGTCCCATCATAACGTAAATAGAGCCTGGG
ATACACAGGGACGAGGTTGTACCCTGGGTaccagaggtcaagttttcttC
AGAGACGATACGACACTGAACGTAGAGATTTCTTTGAATAATGGAGGCAG
CATTCATTGAACATACAAAAACATCCGAGCATAATAAATATCCTTCTTGG
AATActatcattttgaaaaagacgaaaaaagatagtatcattTTATaaca
aagatagtatcgttttgaaaaaaatagtgtcgtttcaaaaaagatagtat
cattTCAATAAAGATAGTATCGCTTTGAAAAAGATAGTGTCGGTTTAACA
AAGATAGtatctttttgagaaaaagttagCGTCCTCGTTTTaacaaagat
agtatttatttccgctttggcgtgCCCAACCTTgcccccgtgtattccag
gctttatttacgttactgatcactgacctttatataaccctggaccaagt
aaaatctgccatctttgattggagtttttttagaattggtacccaaggag
aagccattgcaatgctaaaaattaacgtctaacgccgctacatcatcaaa
agaatttgggaaaaattaaacctagcgctctcgatgcatttacaccgcta
tcgagtagtgccgacattagggtaccaattttcaaaaaactccgatcaaa
gattttgcttggctgggattgagaagctttgtccagggtatatataGGTC
AGTGTTACTGatagacgccagagaatacctatggtgttggctgatgcgag
ttccccctctcagagcAGGAACTTCttaaaacaatacgtcataaagaatt
ctgacgttacaaagttacactgcaatgcaaCGGCTTCAAAAACGAAGAAC
GTATGAAAtatgacgttttgtttttggattacgtaatcttacgcgttcga
aaaccagccaatgccagggtattatctagcgctatcagtaagcaataaga
aagctgataatacacagggaacgaggttgtggCGTGCCATACGAAACTGC
GttgctttttgcttgaaaacaaaagcGAAAGCAACCGGGTtttaatgttt
atgtttatgattgGCTTTTGATTTTGGTGCGATTGTTTTGCTTCAGCCAA
TCAGAAACTCAAAAACTCCTTTAGTATTCATCCCAtatctggatgaaaaa
gatcaaagcggtgcgtaacctgggcagattctcttacggagccttgacct
ttagagtgaatacgtgTCATGTGCGGcgtatcagaatctgctcggaaATT
AATAAAACATATCTCCAGAACCcgaaatttccataactcgaaaaaattta
cattaccAGTGGGATTTCTAGTCTAAACCGCAGACCTCTACAAGACAGCA
GGTAGTATAGATAAGGAGCACAAATCCGTTAGTGGGTTACAGCAACAGCT
TATGAGTTTACGAGTCATGAAGGTTCTACTGTATCTTTACTCTCAAAAGA
GTTCTGGCATATTATGTGACTCTTATTATCAAACTATTTTACAGGTCGAC
ACCGGCGACAAAAGTGGAAGAGTATGAAACGGATACAATCAAGTCTACGC
ATGAATCGAAAAATGCAGTTTCAGTAACTGGAATCAAAGATGACCCGTCA
TCTCTCATTGAGTTGTACAGAAAAGTAGTTTCTGGTGATATTGAAGAACA
GCATATCAATAAACACATTCCATGGCATGCCGACCAATCAGCTACGTTCA
TTGTTGACCTCGAGGGTGTCAAAGACCGAAGAGACGCCCTTGTTGATGCT
TGGCACTAGAAGGATTCGAAAACCTATCGTAGCTACTCACTATCAATCGA
AGATCCTTTCAGCCCTACAATGCAAAATGAAATCGAAGACAAATTTATTT
GTTTCACGAAACGCTCTTGGACATGTAAGACTTTTccttctttgaagaaa
gttatCGCATGCTTCTACAAACCTAGTTTGAGTTTCGCAACACCAGCAAA
CCCACTTCAAAACGCCAACAGATACATCATTATCCAATACAACTACAAAA
CAGCATCAGCATCAGCGGAACCAAGTCAAAAAGTCAGAGTGTATCCGAGT
GTGAAatcaaaagtcaaagaaaagttATCCAGTGGGAAAGGTCCGAAAAA
AGCCGTTTATGAAGTACAAAAGGAAGTGGGTGGAATCGAAAATATGTCCA
ACGCCAGTGAAGTACCAGTTTTGAAAACAGCATATAACCAATCGTTTGGA
CTGCGACAAGAGAAGAGACATCAACCACATGGTAAATTGAGAGATCCACT
CCTCCAATTGATCGAAAAGCAGCACGAAGATGGAAAGTTAAACCATCCAG
TAATCAGGCGTGTTATGACAGATGAAATTTCATTCACTGTAACATTATTC
AATAAAAGAATTGTGAACAACATTGCCAACTTTTGCTGCACGACAGATGA
AAACTTTAAGTCACCACTGAGACAAGATTTTACTTTCGAATTATTCGAAA
ATCCTCCATGCTATGCACTTGTTCAATCATACAGTAACACTTCTCTGATC
ACGAAACGTCACAAGAAGAGCCCGGAGCTTCTTGGTCCAGTCCAGATAAC
ACACTTTAAGAACGAAAAGGTGGTAAAGCTTTTATTTGATACGCTCCTCT
CAGAATGTCCGGGACTTGCCCTACATGTAAAAGTTATCGGCGCTGACGGA
GAAAAAAGCATAACCAACCAGGCGTTACAAGCCTTCCCAAGTTCACTGTT
GCTCATCTGTAGACGCCACATCGAGACAAATATCCAAGAGCAAATCAAGG
GATTGAGCGCCATTAAGAAGGATCAAATTATGACGGACATATTTGGTTCC
TCGTTCCAATCTGGCCTTATTGATGCAACAAGTTTCAATGAATATGATGA
AGCACTCAAGTCCATGATGAAAAAATGGACTTCAGGTAAGAACTTGAATC
TAGTCCCGTGAAAGTGTTTAGTTTGGTAGCCAGGAATGTGAGCCCTCTCA
TTTGGTCTCCTAACTGGTTTGCTTCTATTGTCCAAGTACCTAATTCAAAA
CTCCGGGTACTCTATTTAAAAGGCTGTCATTCCTGTCAATGTTTACAATC
ctacaatccttcaagaaatacttgagacaaatgggaaattccccaggaag
ttttgaaaccacaatcgatttgtaagtgctctaaagtaggttcgaagggt
agagttttaactctgagttttaac Coding sequence (CDS) from alignment at sc0000376:15895..22118+ >TCONS_00020974 ID=TCONS_00020974|Name=TCONS_00020974|organism=Clytia hemisphaerica|type=CDS|length=1092bp|location=Sequence derived from alignment at sc0000376:15895..22118+ (Clytia hemisphaerica)
ATGCAAAATGAAATCGAAGACAAATTTATTTGTTTCACGAAACGCTCTTG
GACATGTAAGACTTTTccttctttgaagaaagttatCGCATGCTTCTACA
AACCTAGTTTGAGTTTCGCAACACCAGCAAACCCACTTCAAAACGCCAAC
AGATACATCATTATCCAATACAACTACAAAACAGCATCAGCATCAGCGGA
ACCAAGTCAAAAAGTCAGAGTGTATCCGAGTGTGAAatcaaaagtcaaag
aaaagttATCCAGTGGGAAAGGTCCGAAAAAAGCCGTTTATGAAGTACAA
AAGGAAGTGGGTGGAATCGAAAATATGTCCAACGCCAGTGAAGTACCAGT
TTTGAAAACAGCATATAACCAATCGTTTGGACTGCGACAAGAGAAGAGAC
ATCAACCACATGGTAAATTGAGAGATCCACTCCTCCAATTGATCGAAAAG
CAGCACGAAGATGGAAAGTTAAACCATCCAGTAATCAGGCGTGTTATGAC
AGATGAAATTTCATTCACTGTAACATTATTCAATAAAAGAATTGTGAACA
ACATTGCCAACTTTTGCTGCACGACAGATGAAAACTTTAAGTCACCACTG
AGACAAGATTTTACTTTCGAATTATTCGAAAATCCTCCATGCTATGCACT
TGTTCAATCATACAGTAACACTTCTCTGATCACGAAACGTCACAAGAAGA
GCCCGGAGCTTCTTGGTCCAGTCCAGATAACACACTTTAAGAACGAAAAG
GTGGTAAAGCTTTTATTTGATACGCTCCTCTCAGAATGTCCGGGACTTGC
CCTACATGTAAAAGTTATCGGCGCTGACGGAGAAAAAAGCATAACCAACC
AGGCGTTACAAGCCTTCCCAAGTTCACTGTTGCTCATCTGTAGACGCCAC
ATCGAGACAAATATCCAAGAGCAAATCAAGGGATTGAGCGCCATTAAGAA
GGATCAAATTATGACGGACATATTTGGTTCCTCGTTCCAATCTGGCCTTA
TTGATGCAACAAGTTTCAATGAATATGATGAAGCACTCAAGTCCATGATG
AAAAAATGGACTTCAGGTAAGAACTTGAATCTAGTCCCGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020974-exon-sc0000376-1491911889:15895..17103 | TCONS_00020974-exon-sc0000376-1491911889:15895..17103 | Clytia hemisphaerica | exon |
| TCONS_00020974-exon-sc0000376-1510915933:15895..17103 | TCONS_00020974-exon-sc0000376-1510915933:15895..17103 | Clytia hemisphaerica | exon |
| TCONS_00020974-exon-sc0000376-1575043694:15895..17103 | TCONS_00020974-exon-sc0000376-1575043694:15895..17103 | Clytia hemisphaerica | exon |
| TCONS_00020974-exon-sc0000376-1491911889:17735..17825 | TCONS_00020974-exon-sc0000376-1491911889:17735..17825 | Clytia hemisphaerica | exon |
| TCONS_00020974-exon-sc0000376-1510915933:17735..17825 | TCONS_00020974-exon-sc0000376-1510915933:17735..17825 | Clytia hemisphaerica | exon |
| TCONS_00020974-exon-sc0000376-1575043694:17735..17825 | TCONS_00020974-exon-sc0000376-1575043694:17735..17825 | Clytia hemisphaerica | exon |
| TCONS_00020974-exon-sc0000376-1491911889:20439..22118 | TCONS_00020974-exon-sc0000376-1491911889:20439..22118 | Clytia hemisphaerica | exon |
| TCONS_00020974-exon-sc0000376-1510915933:20439..22118 | TCONS_00020974-exon-sc0000376-1510915933:20439..22118 | Clytia hemisphaerica | exon |
| TCONS_00020974-exon-sc0000376-1575043694:20439..22118 | TCONS_00020974-exon-sc0000376-1575043694:20439..22118 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000376 | supercontig | sc0000376:15895..22118 + |
Blast
The following BLAST results are available for this feature:
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