TCONS_00020964 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020964
Unique NameTCONS_00020964
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length968

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020964 ID=TCONS_00020964|Name=TCONS_00020964|organism=Clytia hemisphaerica|type=transcript|length=968bp
AGGTTATTCACACTAGGTTCTAATGAAGTTATTTGGCTAATACAGATTTG
GTGCATTCTGAGAAAAAAGTCGCCTNAAAACACTAGCAGAGGAGTTGGAA
ATAATGCTagatttcaatgatcttatcaGTTATGTTTCTCTAAAGAGATT
ACTGCAAGAACATGGATTGAGTTGGTCTAAACGAGCGCAATTAGTTGATC
CACAGCATGTCTGGTTTGACGGAAGTGAATCGGACATGTTCAACAAATTG
GAAAGTATCGCGTTATCCGAACAGCCACGAACACCCGTGTTGAATTGTCT
CATCACTAAAGCTCTCTTCCCCAAACACGTGGAAAATCATtacaAAACAA
GCCGTGTGAATTGGGTGGTTCAATCATCAGCTGTGGATTACCTGCACTTG
ATGTTGACATCCATGGCTTGGCTTATCAAAGAATACAATATTGATGCACG
ATTCTGTGTTTCTATACATGATGAGGTTCGTTACATTGTAAAGGACGAAG
ATAAATACCGTTTGGCGTTGGCGTTACAAATCACCAATCTTCTAACGCGC
TCCATGTTCGCTTACAAACTCAACCTGAACGATCTACCACAGtCAGTTGC
ATTCTTCAGCTCAGTAGACATTGACAAAGTGTTACGGAAAGAAGTTGATT
TAGACTGTGTAACGCCATCAAATCCTCTCGGGCTACAAGAAGGACATGGT
ATTGGAAAGGggGAATCTTTGGACATTTACCAACTTCTAGAAAGAACCAG
AGGAGGAAAATTTGATTGAAGTCTATATCCTGCTTTTGAAGGGAAgtaca
tttattttttaaaagatagatattttttgtatgatattttggacaattag
aGTTTATACTTTTGTATTGAAAACGATAAATAATCCAGAAATCTTTCTTA
GGCGTTTTTTTAGTACGTAGTCCtacattaatttaagtaatGAATCAACC
CTTAGGATCGGTTTAATT
Run BLAST on NCBI

protein sequence of TCONS_00020964-protein

>TCONS_00020964-protein ID=TCONS_00020964-protein|Name=TCONS_00020964-protein|organism=Clytia hemisphaerica|type=polypeptide|length=221bp
MLDFNDLISYVSLKRLLQEHGLSWSKRAQLVDPQHVWFDGSESDMFNKLE
SIALSEQPRTPVLNCLITKALFPKHVENHYKTSRVNWVVQSSAVDYLHLM
LTSMAWLIKEYNIDARFCVSIHDEVRYIVKDEDKYRLALALQITNLLTRS
MFAYKLNLNDLPQSVAFFSSVDIDKVLRKEVDLDCVTPSNPLGLQEGHGI
GKGESLDIYQLLERTRGGKFD
Run BLAST on NCBI

transcript from alignment at sc0000374:285076..295758-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020964 ID=TCONS_00020964|Name=TCONS_00020964|organism=Clytia hemisphaerica|type=transcript|length=10683bp|location=Sequence derived from alignment at sc0000374:285076..295758- (Clytia hemisphaerica)
AGGTTATTCACACTAGGTTCTAATGAAGTTATTTGGCTAATACAGATTTG
GTGCATTCTGAGAAAAAAGTCGCCTNAAAACACTAGCAGAGGAGTTGGAA
ATAATGCTAGATTTCAATGATCTTATCAGTTATGTTTCTCTAAAGAGATT
ACTGCAAGAACATGGATTGAGTTGGTCTAAACGAGCGCAATTAGTTGATC
CACAGCATGTCTGGTTTGACGGAAGGTTCGTGGTTTTCTTGTTTGTTTTT
GATTTGTTTGTTTGAAAAACCGGAGACCCATCCACTGTCCCGCTTTCTAC
CCAAACAATAATTATATCATACCCATCCAATGTCCTGCTTCGTACCCAAA
CTAGACTCATGCCACACCAAGTCACTGTCCTGCTTCGTACCCAAACAATA
ATTATATCATACCCATCCAATGTTCTGCTTCGTAACCAAACTAGGATTAT
GCCGCACCCACCCACTGTCCTGCTTCGTAAATCATGCCCAAATAAGACAG
TATAGGGGCTTTTTATATAAGAATATGCTTTACAAGAATATTCATAATGA
ATTTGGCCCAAAAGATTAATAATATGCTAAGAAAATCATCATTATAAAAT
TTGGCCACTATNCCTATTTTGATAAAAAATAATTTTGGGACCCTTCACGT
TGAGCTAAATCTTCATTTTTAGCTTATTTTATAACATTTTTATTTGACTT
TCAGGCCCACACATTTGGTGCCATTGAAATTATAGGCCACTTACATATTT
GGCGTATTATGTGATTAAAGTCGCCGAATTTAGTTTTCTGCCTAATTTGA
TAAAAGATCATTTTTGGATCGTTTATTTTAAGTTTAACTTTAAAGTTTAG
TCTATTTTCGACATTTTCATTAGGCTTTTGGACCTTCACATTTGGTCCTA
TTGGAGCTGCAGGCCAGTTACATTTTGGGATTGTTTATTTTAAGTTTAAT
TTTCAAGTTTAGTATATTTTCGACATTTTTAATTGACTTTCGGGCATTCA
TATTTTGTTCCATTGAAGCTACAGGCCAGTTACAGATTTGGCGTTATTTG
CGCTAAAAGTTGGCAAGTATTTTTTTGGCTTATGTTGTTCTTGGAATATT
TTAGGATTGGTTCTCTTCGATTTAATTTTAAGTTTAGGCCATAGGCAATC
CTTTTGGTCGATGCAAGGTCATTCACACTAGGTTTTAATGAAGTTGTAGT
GCTATACAGATTTGGCGTATTCTGAGAAGAGATTCGCTGTATTCTTTTTT
TGTCTATTTTGATGAACTGTGATGAAAGATAATTTTGAGACTCTTCAATT
TGAACTAAATCTTCAGTTTTAGCTTATTTTCAACATTTCTATTTGACTTT
CAGGCCTAAGCATTCGGTTTCATTGAAATTATAGGGCTATACAGATTTGG
CGTATTATGCAATAAAAGTCGCTGAATTAGTTTTCTTCCTAATTTGATAA
AAGATCATTTTTGGATCGTTTATTTCAAGTTTAATTTTCAAGTTTAGTCT
ATTTTCGACATTTTCATTAAGCTTTTGGACCTTCACATTTGGTCCTATTG
AAGCTGCAGGCCAGTTACATTTTGGGATTGTTTATTTTAAGTTTAATTTT
CAAGTTTAGTATATTTTCGACATTTTTAATTGACTTTCGGGCATTCATAT
TTTGTTCCATTGAAGCTACAGGCCAGTTACAGATTTGGCGTTATTTGTGC
GAAAAGTCGCCAAGTGTGGTTTTGTCTTCTGTTGGTCTTGGAATATTTTA
GGATTGGTTCTCTTCAGTTTTATTTTTCAGTTTAGGCCCTAGGCAAACTT
TTTGGTCGATGTAAGGTTATTCACACTAGGTTCTAATGAAGTTATTTGGC
TAGTACAGATTTGGCGCATTTTGCCATAAAAGTTGCCATATTCTTTTTTG
ACCCAATTTCATAAAGGATCGTATTGAGATTGTTTATTTTAGGTTTAATT
TTCAGTTTTAGCTTATTTTCAACATTTCTATTTGACTTTCAGGCCTAAGC
ATTCGGTTTCATTGAAGTTATAGGGCTATACAGATTTGGCGTCTTTTGAG
ATAAAAGTCGCCATATTCGTTTTTGGCCTATTTTGATAAAAGATAATTTT
GGGACTCTTTAATTTGAACTAAATCTTCAGTTTTAGCTTATTTTCAACAT
TTTTATTTGACTTTCAGGCCCACACATTTGGTGCCATTGAAATTATAGGC
CACTTACAGATTTGGCGTATTATGCTATTAAAGTCGCCGAATTAGTTTTC
TACCTAATTTGATAAAAATAACATTTTGTGATTCTTTAATTTGAACTAAA
TCTTCAATTTTAGTCTATTTCCAACTCTTGTGTTTGACTTTTGGGCAACC
AATCCCTTAAACTGTGCCAACCAAAAATACTTGAAAAGAGTCCTATCTGC
ATTTAAATGTGTACCGATGGTATTTGAATACCTAACTTGTTGTATTTTGG
ATATAAAATGAGATAAAAAGCCACAATTTTTTAAATTAGCTGGCTTTTTT
TGCTCAAAATCCATAACCAACTTTTTGGCTGAAATATGGAAAATCCTTAG
CAACTCTTGCCATGAGCCAAAAATTGGGGTTGCTTATAAAAAATGTGTAC
AGCCTCGCTTAAGATAAGCAAAATCGAAACCTTGAGTATCCGCCACCGTT
ATTCTATCAATAGAAAATGAAATATTTGAGCGGGAAAAAATTTGTTCTTC
AAAATTTAATCGTAGTTTTTAAAATATTTTTGCTATGTTAGTCTTAATCA
TCTGGTCGTGTTATAAAATATTTGAATATTGAGGGATAATTCCCTTCGTC
AAAAAAAAAAATTGTAATCCTTGTATAGTCACAGTTTTCAAATTGTACAA
AGTCTAAATGTCATAAAATATATTAATTTTTAAATCCAAGTGGAATTCTT
TTCGTTACTTCTTATTGTGTTTATTCTAAGTGTTTCAAGGCTGCACATAA
GCAATCATTATAATTCATGATTTTCATGACATAATGTTCTATAAGGAAGC
ACCTAAAAAAGCCCGGGCGTTTGCGACTAGTTTTGAATTTAAATAATAAA
ATTAGAAACAAGCGCCCGAACAATTTTAGGTGCTTCTGTATAAAACATTC
AGTCGTAAATATCATGAATTTCTTTTCGTCGTCATAAAGTGCTTAAGTAT
AGTCTCATTGCAACCTATTCTTATATCGTCAAAGCTCATCAAAAATACTA
AGATCTTGGAAAAATTTCCATTACGTCAATTTTCGCAAATTTTATAAATG
TTTCAAGATAGCATACACAACCTCTTCATCGTTGTCATCAAACTCATCAT
TCGAATTCTGATGCATTATGGGTCCTCCATCCACGACTCTATCAACTGGT
ATAGTTTCATTGCCTGATCCTTCTAGTCNTGCATACACAACCTCTTCATC
GTTGTCATCAAACTCATCATTCGAATTCTGATGCATTATGGGTCCTCCAT
CCACGACTCTATCAACTGGTATAGTTTCATTGTCTGATCCTTCTAGTCTC
TGGTGTTGATTTTGTGCTTCATGATTCTCAAGTTAATCAGGGTAGCTGTT
TTAGATTTCACCGCTTCTCCTATCTCTTGTCTCCGTCCAGCTAACTGAAT
TTCCGTTCGAATATTAGACATTTTTAATGTCAGATAATGATTGTAGATTT
CATTGCTGTTATTTGACTTTGTCTCTTGATCCCTTACATTAATATCACTT
TGATTTACAGATTCAAGCTTTTGGTCAGAATGTATTCCAGCTTGAATCTC
CAGAGAATTTCCGTCAGAACTGGTGATCTCAATATTGCGTTCTCTGTCTC
CAAGCTTTCTCATATCAATTTTTAGCCATGCCTCTTGGCGATGTTGTTGT
TGGCTTATCTTCACAGCATCATTGTTGTCAAATATAATCTCCATAACTAA
TCCCTCGTTTATAGTCGCAATAAAGCACCCACGCACTGTCTCTCCAAAAA
TTAAATGTTATTCTACATTTGAATCAGTATACAAAAGGGTGTACTTTATT
GTAATCTAGTATGCCAATCATTTATAACAAACAGCAACTAATTTATTGTT
TTCGGTTATAAAAATCACCTGACAAATTCGATCGAGTGCCATAGAAAATT
GCTGTCATTCCTTTCAATTTATTGTGGTAGACTCTCTATTGTACCAGTAC
TTCAGTTTTGTTTTATTTTGCATATTTTGTGGCCGGGAAAACCCCAATGA
ATATTTTATGGCTGGAAAAATTTAAATTATCAAAACAATGCGATTTTAAG
TTGCGGTATGCGTAAACAAACTCTCCAACCAAATGTTTTATTTGCTTAAC
TGCGCAAGTTTCGTGAACAGGCTAAACATTAAGCTCAAATCATGTGCTTA
TCAGCCTAAAATTAGTCTGAATAGCAGACCTCTATAGATATACTTCTATA
AGAAACTCTTTTTGCTAGAGGATGAGCAGAAGCCTAGCCTAAAATACTTG
TACCTAACTGGTCATACTTTCTAAGATATATATAACACAATAGAATTCCA
GAGAAGTTCTCTGGTAAGTGTGTATTTTTTTCTTTTATTACGTAAAGATA
TTGTTCCTAGAAAATTATTTTTCAAGTTTCCCTCTGATAGAAAGAAATTT
AACTTATCTTAAATGGGAAAATGTACTGTTAGTAACTATGGGTTACCCCC
AAAACAAAAACAATTAGCTTAAAGATAGGGNTTGTTCCTAGAAAATTATT
TTTCAAGTTTCCCTCTGATAGAAAGAAATTTAACTTATCTTAAATGGGAA
AATGTACTGTTAGTAACTATGGGTTACCCCCAAAACAAACACAATTAGCT
TGAAGATGGGGAAATATTTGACATGCGTAAATAATGCTTACGTCATAAAT
CGCATTTTAATTATTGTGGATAAGGATTCAACGTTCTAAACTAATCAGTT
AGATGCATGATAATTCCTGCTTGTAAAATTTGACCAATTCATGATATGCA
CCATTGCAATGTCATTACATTACGGACACAACAGCTGATTGGTTGTAAGT
GACGTATTGACTGATGTTACGTCACTTTCAACCAATCAGCTATTGGGTCC
GTGATGTAGTGTCAGAAGACATTGCCATCGTGCATATCCTGAATATAGGG
TTTCCGAAACATCAGTGAAAACAGCACAGCCGACTAGATTCTTTGTATGA
TGCTTCTGTTCCATATAAATCTCATTACCCCTTTTGGTCCTTATTCCCTT
GCCCGGGGTCCACATAATATGTCACTCCCTAATTACCAGTATACACTATT
TATGGTCACACAAAAATGTCTGTTCGTTCTTCATTACGCTACTGGCGAAT
GAGAAACATCAAAAAGGACCGATGACATTTCAACGATTATACTTCCAATC
TAACAAACTAGGTAGTAAATATATGGATTAGGGTGTTATATGAAAAATTT
GTAGGCCTTTAACATAGAAATCAACTTATATTATCTCGTATATATATTGA
GTATATAGCACGGACTATAACAAGTCCAAGTCCATTAAAATTACAGTGGA
TAATAATTAAGTACTGGATCTGATAATTTCATATTCAAATCACTTGAAAG
TACCCTGCGAGTTTAAACCAATGAGAACCGCACAAACAACGCTTTTCTCT
ATGAACAGTCGGAAAGTTATCGTGTCCTTTCACTCCTGATATTCTGGATG
AGGGTTTTGGGAATATTTGGCCCAGCATCGCTTTCCAGGGTGCTGTATGT
CTGTTTTTGAAGAAACAGCGCTTTGTCAACTCATCTTCATTTTGGAAAAA
ACGGCGCCTTGCTCTGGTTTAAAGACATAATAGCGAGGTTACGCAAGTGT
TTATTTAGACCGTGTACATAAGATTTCACTTGCATGGTTTGCTTTGGCAA
GTTATGTACAGGCCTACGGTATCGCACTTTACGGTCAAAATAAACCCGTG
CTTAACCTCGCTAATGTATCAAAACGGACAAAGCTGTAGTAGAAATGAAG
CAAAAAGTAATGGAGGGAACACATTTTAGTCAAACTAAATCCCGTAACAT
TATTATCGTANGTAGTAGAAATGAAGCAAAAAGTAATGGAGGGAACACAT
TTTAGTCAAACTAAATCCCGTAACAATAATCGTTCTATCATATAACGCCT
ATACTACTGTATTACACGCATTATAAACGACTCCAGGCTTCACATTCTTG
TATAATCCTATATTACTACTTATTACATGTCTAAATATTAAAGTTATTAT
TTTTACATAAGTGTTCCCGTTTCATATCAGACATTTACTATCAGGACAGT
GTCTGCCTATTGTTATCTTGTGCTGATATAAGCAAAAAAACGTTTTTCTT
TTCCTCTTTCTGACAAATTTTGATCCACATATGTAACGATTCAATGTGAA
AAAGCTTGTGAATTAATATTGCTGAGTAAGCAAACGATATCACTCTTATT
TAAAAACCTTTAAACGTATTATAAACGTCTCTCTCCCTTACACTTGCAGT
GAATCGGACATGTTCAACAAATTGGAAAGTATCGCGTTATCCGAACAGCC
ACGAACACCCGTGTTGAATTGTCTCATCACTAAAGCTCTCTTCCCCAAAC
ACGTGGAAAATCATGTGAGTCTTGTCAGTAATATTTTTTACCCGTTTTAT
TTCACTTCACAGCTATACCTATAACCACGTTAGTGTCAGCTATGTTGTCT
GTTTTTACCCACTTTAATGTACTTTACAAGAGTTATACCTAACGTTAGTC
TTTAGTCTATAAATTTTGAGCCTTGTCTTAGCAGTGGACCCAATTGCGAA
AATGACTTTAAAAAACAGATCACAGATCCTAAGGTTTGTCCCCTACATTT
AGTAGAAACTGGGCTATTCCAGAAATACAATCATGGTCGTAATATTTGAG
AAAAAAAGGGAAATTCCTACAAAATCTTATAACCACAAACAATTTGGAAG
CGCTCTCAGAATACAGTCTGGAAGTCTATAAACCCCTCCCGAATTGAAAT
GCTACAATAAATCTTTCAATTAGCCCNAGTCTATAAACCCCTGCCGAATT
GAAATACTCGAATAAATTTATCAATTAGCACAAAAGCGACTTTCTCGCCC
GAACTCCAAGTTTCGGAAAACGAGGAAATAAGCTAAATTCTCAATAGATT
TTGACCATGATTGTAGTCAGTACCCTATGTTGTTGTACTATGTTGAGGAG
GTATGACGTCCAGGGTGGTCTGGAAAATGAAAAAGTCTAGGAGGGTCTGG
GTTTTTCAAGTGTAAAAATTCCAGGGTGGTCAGTCAAACGAGGGCGAAAA
TCCAGGGTAATTCAAAAGATGAGAAAAAATCCATCCAAAAGTACTTAAGT
CAAATTCCTCCTGATACTGGGATCGATTTTTGTGCATTCATTTACAAATC
AATAGGAATATATTTGACAAAGAAAAAATTTTGTCAGATAATAACTTTAA
CTAATACGCATTACGTCTGTACGCATTGATAACTATTTGTTTGATTTTCA
GTACAAAACAAGCCGTGTGAATTGGGTGGTTCAATCATCAGCTGTGGATT
ACCTGCACTTGATGTTGACATCCATGGCTTGGCTTATCAAAGAATACAAT
ATTGATGCACGATTCTGTGTTTCTATACATGATGAGGTTTGTTATCTCTG
TTTGGCCCTGTGATCGGGGAACTCATAAGGGTGACCTTCCATAAATTGGC
GGATGAGTGGAATCTACTCATTTTTTGCCAGGACGTTAAGGAATCTAGAT
CTACCGTTTGTGATGGAAACGTGGGCTGTTTTTGTCTTGAAAACGGAATT
TAGTAAAAATATCGGTCGGAATTTCGGAATTGGAACAAATAAACAAAATT
TTAGGAACTTTTGACAAAAATGATTTCAAAAAAATTAAGCGCCGGAATTT
AAAGAAGAAATTAACGGTATGGTGGAATCGGGTACCACAATTGATAAGTG
GGCTAACATAGATTGTCGTAACTATATTGAATGTAAAGTCCTTACAGTTG
GGATATTAAAATTACAATAGCAAGGTTAAACACGGGTTTATTTTGACCGT
AAAGTGCGATACCGTAGGCCTGTACATAAGATTTCACTTTCATGGTTTGC
TTTGGCAAGTTATGTACAGGCCTACGATATCGCATTGAACGGTCTAAATA
AACCCGTGCTTAACCTCGCTAATACTATTTCCCAATACTTTTTACAACTC
AGGTTCGTTACATTGTAAAGGACGAAGATAAATACCGTTTGGCGTTGGCG
TTACAAATCACCAATCTTCTAACGCGCTCCATGTTCGCTTACAAACTCAA
CCTGAACGATCTACCACAGGTAAGGATTAATCATAGTCTTCGAAAGGCGT
GAATGGGCTAGGCTCGCAACTACTAGGAAAAAAACTAAAATCTCACCCCG
AAATCTTACTATCCGTGTGGTTTACACAAAAACGCACTGCCAACGAGAAG
AAAAACTGATAGTATGTTTCCTAAAAAGTTGTCCTAATAAGGTCTCAATT
CATCAAGCATAAGTGAAGGGGACTTTAAATGCATTCAGTGGGATCGGAAC
TCTATCATTAAACTGCGAAAAATATTTTCCTGGGTCTTATTCACGTCTTC
TCCCTCAAAATATTTTATAAACACTACAGTGAACTCTCTCTGTAATTCGA
ACCTCTACTATTTGAATCTTTCTATAATTCGAAATAAAATATTGGTCCCC
TCAGCTGAAAAGTTTTTGGTTCTTTGAAGATCGAATTAGAGAGAATCAAC
TATACTTTCGAATGGAATTAGTTTGGTTATAAAAGATATGGCGNTTTTTG
GTTCTTTGAAGATCGAATCAGAGAGAATCAACTATACTTTCGAATGGAAT
TAGTTTGGTTATAGAAGATTTGGCATCGTAGGCCCCTTTACTTTAATGGG
CTTTTCCAGAAGAAAGATCTACCCCCACTGTTGAGGATATTGATTTTTCG
AAGTATCGAACCCCCTGGATATCCTACTTTATTAGTAAAGACCCCCTGGA
TATCCTCTCTTATAAATATGCTTACCCCTGGATATCGTATTTTTTACTTG
AAAAGACATTTTATCCCCTGGATATCCGCTCCCTTGTAGATATTTAACCC
CCTGAATATCCACTTTTGAGCAAAAATCGTTAACCCCCTGGATATCCGAA
CCTTTTTAAGTCAAAAGAAAATTCTTGAAAATGTGAGGATACCCCTGAAA
GATTATACTTTAAAGTGACGGTGGACGAACTAAAACCTGTCTTTTGCCTC
CTGGAAATTTTAGAATAACTGTTTACCCCCTCGAAAATAAAACAAAAAAC
ACTTCTTTAGACCCCCTGGAAATTCTTCTCAGATTACCCCCATGGAAATG
ACCCCTTCTGTATGGAGATAAAATGGAATGGCCCATTGTAATTTATTAAT
TTTTGTTCTTTTTTTCAGTCAGTTGCATTCTTCAGCTCAGTAGACATTGA
CAAAGTGTTACGGAAAGAAGTTGATTTAGACTGTGTAACGCCATCAAATC
CTCTCGGGCTACAAGAAGGACATGGTATTGGAAAGGGTTTGTATACACAG
ATATCTTATATAAAACACTACTTTAATGGGACAAACTTTCGCGGGGATTA
AATTTCGCGGATTTCGCGGATTTGGGTGTCATCCGCAAAAATCCGCGAAA
TTAAATCCTAATGGAAATTTGGAAGGGCCTCATCAGCGAAATATTTCTAA
TCAAAACTCAAAATATTTCAAATTAATACTATTTGAATGGTTAAAAAAGT
GCAAATAATGTGTATTTCAACAACCAATATGCATGATTTGACAGTATAAA
GATACAAAATCGTGAAAATATTGCCACCCAATAGTGCGAAATTTTTGAAT
TTCGCGGATAGGCCCAACCGCGAAATTTTATCCCATTAAAGTAGATCATG
CTCCTTCTGTCTTTCTCAAGTCATGGCAGTCGAAGCGAAATAATGCAGCA
CCATCTTTGCTGAATAGACAATAGTTCGTTCAAAAACGAAAGTTGGATCA
ATCAATACTATTCTCTCACTTTCTCGTTTCCTGCCATATCAGAAATGTTT
GTCCTGATTGAACAACTTGCCGGTGCCGAGCAAGATGGCGCATAATTTTG
CTTGAAAGACAGGGAAAGAGTAGCTCTATCTAGTATTTTATTTAAGACGC
CGGTTTGTTTCTGTTCTTTAAATAGTTACTTAAAATCATCCTCGCCAGCT
TAAAAGGACCATTTTATAAACATGTTTTTATACAAATAAATTAAGTAAGT
TTTAGCTGGATTTCTTTGCACAATGTTCATGGTATGCTTTATAAGCGTTA
AAGGTACTTAAAATCAGCAATCTAGTAACAATCTAATCTCTTAGCAATTT
CATAAATATTCGAAGCTGGAAAAAGTTCGGCCTTTTTTTTATCTGTTTTA
GGTAGCCCAATGCGAATCGGTTTATTGAATATGAATTATTATTTTTTCAA
GTTTTTCCTTTTTTTTTCTTTTCAGGGGAATCTTTGGACATTTACCAACT
TCTAGAAAGAACCAGAGGAGGAAAATTTGATTGAAGTCTATATCCTGCTT
TTGAAGGGAAGTACATTTATTTTTTAAAAGATAGATATTTTTTGTATGAT
ATTTTGGACAATTAGAGTTTATACTTTTGTATTGAAAACGATAAATAATC
CAGAAATCTTTCTTAGGCGTTTTTTTAGTACGTAGTCCTACATTAATTTA
AGTAATGAATCAACCCTTAGGATCGGTTTAATT

Coding sequence (CDS) from alignment at sc0000374:285076..295758-

>TCONS_00020964 ID=TCONS_00020964|Name=TCONS_00020964|organism=Clytia hemisphaerica|type=CDS|length=3996bp|location=Sequence derived from alignment at sc0000374:285076..295758- (Clytia hemisphaerica)
GGGAATCTTTGGACATTTACCAACTTCTAGAAAGAACCAGAGGAGGAAAA
TTTGATTGATCAGTTGCATTCTTCAGCTCAGTAGACATTGACAAAGTGTT
ACGGAAAGAAGTTGATTTAGACTGTGTAACGCCATCAAATCCTCTCGGGC
TACAAGAAGGACATGGTATTGGAAAGGGTTCGTTACATTGTAAAGGACGA
AGATAAATACCGTTTGGCGTTGGCGTTACAAATCACCAATCTTCTAACGC
GCTCCATGTTCGCTTACAAACTCAACCTGAACGATCTACCACAGTACAAA
ACAAGCCGTGTGAATTGGGTGGTTCAATCATCAGCTGTGGATTACCTGCA
CTTGATGTTGACATCCATGGCTTGGCTTATCAAAGAATACAATATTGATG
CACGATTCTGTGTTTCTATACATGATGAGTGAATCGGACATGTTCAACAA
ATTGGAAAGTATCGCGTTATCCGAACAGCCACGAACACCCGTGTTGAATT
GTCTCATCACTAAAGCTCTCTTCCCCAAACACGTGGAAAATCATATGCTA
GATTTCAATGATCTTATCAGTTATGTTTCTCTAAAGAGATTACTGCAAGA
ACATGGATTGAGTTGGTCTAAACGAGCGCAATTAGTTGATCCACAGCATG
TCTGGTTTGACGGAAGGGGAATCTTTGGACATTTACCAACTTCTAGAAAG
AACCAGAGGAGGAAAATTTGATTGATCAGTTGCATTCTTCAGCTCAGTAG
ACATTGACAAAGTGTTACGGAAAGAAGTTGATTTAGACTGTGTAACGCCA
TCAAATCCTCTCGGGCTACAAGAAGGACATGGTATTGGAAAGGGTTCGTT
ACATTGTAAAGGACGAAGATAAATACCGTTTGGCGTTGGCGTTACAAATC
ACCAATCTTCTAACGCGCTCCATGTTCGCTTACAAACTCAACCTGAACGA
TCTACCACAGTACAAAACAAGCCGTGTGAATTGGGTGGTTCAATCATCAG
CTGTGGATTACCTGCACTTGATGTTGACATCCATGGCTTGGCTTATCAAA
GAATACAATATTGATGCACGATTCTGTGTTTCTATACATGATGAGTGAAT
CGGACATGTTCAACAAATTGGAAAGTATCGCGTTATCCGAACAGCCACGA
ACACCCGTGTTGAATTGTCTCATCACTAAAGCTCTCTTCCCCAAACACGT
GGAAAATCATATGCTAGATTTCAATGATCTTATCAGTTATGTTTCTCTAA
AGAGATTACTGCAAGAACATGGATTGAGTTGGTCTAAACGAGCGCAATTA
GTTGATCCACAGCATGTCTGGTTTGACGGAAGGGGAATCTTTGGACATTT
ACCAACTTCTAGAAAGAACCAGAGGAGGAAAATTTGATTGATCAGTTGCA
TTCTTCAGCTCAGTAGACATTGACAAAGTGTTACGGAAAGAAGTTGATTT
AGACTGTGTAACGCCATCAAATCCTCTCGGGCTACAAGAAGGACATGGTA
TTGGAAAGGGTTCGTTACATTGTAAAGGACGAAGATAAATACCGTTTGGC
GTTGGCGTTACAAATCACCAATCTTCTAACGCGCTCCATGTTCGCTTACA
AACTCAACCTGAACGATCTACCACAGTACAAAACAAGCCGTGTGAATTGG
GTGGTTCAATCATCAGCTGTGGATTACCTGCACTTGATGTTGACATCCAT
GGCTTGGCTTATCAAAGAATACAATATTGATGCACGATTCTGTGTTTCTA
TACATGATGAGTGAATCGGACATGTTCAACAAATTGGAAAGTATCGCGTT
ATCCGAACAGCCACGAACACCCGTGTTGAATTGTCTCATCACTAAAGCTC
TCTTCCCCAAACACGTGGAAAATCATATGCTAGATTTCAATGATCTTATC
AGTTATGTTTCTCTAAAGAGATTACTGCAAGAACATGGATTGAGTTGGTC
TAAACGAGCGCAATTAGTTGATCCACAGCATGTCTGGTTTGACGGAAGGG
GAATCTTTGGACATTTACCAACTTCTAGAAAGAACCAGAGGAGGAAAATT
TGATTGATCAGTTGCATTCTTCAGCTCAGTAGACATTGACAAAGTGTTAC
GGAAAGAAGTTGATTTAGACTGTGTAACGCCATCAAATCCTCTCGGGCTA
CAAGAAGGACATGGTATTGGAAAGGGTTCGTTACATTGTAAAGGACGAAG
ATAAATACCGTTTGGCGTTGGCGTTACAAATCACCAATCTTCTAACGCGC
TCCATGTTCGCTTACAAACTCAACCTGAACGATCTACCACAGTACAAAAC
AAGCCGTGTGAATTGGGTGGTTCAATCATCAGCTGTGGATTACCTGCACT
TGATGTTGACATCCATGGCTTGGCTTATCAAAGAATACAATATTGATGCA
CGATTCTGTGTTTCTATACATGATGAGTGAATCGGACATGTTCAACAAAT
TGGAAAGTATCGCGTTATCCGAACAGCCACGAACACCCGTGTTGAATTGT
CTCATCACTAAAGCTCTCTTCCCCAAACACGTGGAAAATCATATGCTAGA
TTTCAATGATCTTATCAGTTATGTTTCTCTAAAGAGATTACTGCAAGAAC
ATGGATTGAGTTGGTCTAAACGAGCGCAATTAGTTGATCCACAGCATGTC
TGGTTTGACGGAAGGGGAATCTTTGGACATTTACCAACTTCTAGAAAGAA
CCAGAGGAGGAAAATTTGATTGATCAGTTGCATTCTTCAGCTCAGTAGAC
ATTGACAAAGTGTTACGGAAAGAAGTTGATTTAGACTGTGTAACGCCATC
AAATCCTCTCGGGCTACAAGAAGGACATGGTATTGGAAAGGGTTCGTTAC
ATTGTAAAGGACGAAGATAAATACCGTTTGGCGTTGGCGTTACAAATCAC
CAATCTTCTAACGCGCTCCATGTTCGCTTACAAACTCAACCTGAACGATC
TACCACAGTACAAAACAAGCCGTGTGAATTGGGTGGTTCAATCATCAGCT
GTGGATTACCTGCACTTGATGTTGACATCCATGGCTTGGCTTATCAAAGA
ATACAATATTGATGCACGATTCTGTGTTTCTATACATGATGAGTGAATCG
GACATGTTCAACAAATTGGAAAGTATCGCGTTATCCGAACAGCCACGAAC
ACCCGTGTTGAATTGTCTCATCACTAAAGCTCTCTTCCCCAAACACGTGG
AAAATCATATGCTAGATTTCAATGATCTTATCAGTTATGTTTCTCTAAAG
AGATTACTGCAAGAACATGGATTGAGTTGGTCTAAACGAGCGCAATTAGT
TGATCCACAGCATGTCTGGTTTGACGGAAGGGGAATCTTTGGACATTTAC
CAACTTCTAGAAAGAACCAGAGGAGGAAAATTTGATTGATCAGTTGCATT
CTTCAGCTCAGTAGACATTGACAAAGTGTTACGGAAAGAAGTTGATTTAG
ACTGTGTAACGCCATCAAATCCTCTCGGGCTACAAGAAGGACATGGTATT
GGAAAGGGTTCGTTACATTGTAAAGGACGAAGATAAATACCGTTTGGCGT
TGGCGTTACAAATCACCAATCTTCTAACGCGCTCCATGTTCGCTTACAAA
CTCAACCTGAACGATCTACCACAGTACAAAACAAGCCGTGTGAATTGGGT
GGTTCAATCATCAGCTGTGGATTACCTGCACTTGATGTTGACATCCATGG
CTTGGCTTATCAAAGAATACAATATTGATGCACGATTCTGTGTTTCTATA
CATGATGAGTGAATCGGACATGTTCAACAAATTGGAAAGTATCGCGTTAT
CCGAACAGCCACGAACACCCGTGTTGAATTGTCTCATCACTAAAGCTCTC
TTCCCCAAACACGTGGAAAATCATATGCTAGATTTCAATGATCTTATCAG
TTATGTTTCTCTAAAGAGATTACTGCAAGAACATGGATTGAGTTGGTCTA
AACGAGCGCAATTAGTTGATCCACAGCATGTCTGGTTTGACGGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011754XLOC_011754Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020964-proteinTCONS_00020964-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020964-exon-sc0000374-1575043694:295534..295758TCONS_00020964-exon-sc0000374-1575043694:295534..295758Clytia hemisphaericaexon
TCONS_00020964-exon-sc0000374-1575043694:289195..289309TCONS_00020964-exon-sc0000374-1575043694:289195..289309Clytia hemisphaericaexon
TCONS_00020964-exon-sc0000374-1575043694:288173..288307TCONS_00020964-exon-sc0000374-1575043694:288173..288307Clytia hemisphaericaexon
TCONS_00020964-exon-sc0000374-1575043694:287490..287606TCONS_00020964-exon-sc0000374-1575043694:287490..287606Clytia hemisphaericaexon
TCONS_00020964-exon-sc0000374-1575043694:286273..286390TCONS_00020964-exon-sc0000374-1575043694:286273..286390Clytia hemisphaericaexon
TCONS_00020964-exon-sc0000374-1575043694:285076..285333TCONS_00020964-exon-sc0000374-1575043694:285076..285333Clytia hemisphaericaexon
TCONS_00020964-exon-sc0000374-1510915933:295534..295758TCONS_00020964-exon-sc0000374-1510915933:295534..295758Clytia hemisphaericaexon
TCONS_00020964-exon-sc0000374-1510915933:289195..289309TCONS_00020964-exon-sc0000374-1510915933:289195..289309Clytia hemisphaericaexon
TCONS_00020964-exon-sc0000374-1510915933:288173..288307TCONS_00020964-exon-sc0000374-1510915933:288173..288307Clytia hemisphaericaexon
TCONS_00020964-exon-sc0000374-1510915933:287490..287606TCONS_00020964-exon-sc0000374-1510915933:287490..287606Clytia hemisphaericaexon
TCONS_00020964-exon-sc0000374-1510915933:286273..286390TCONS_00020964-exon-sc0000374-1510915933:286273..286390Clytia hemisphaericaexon
TCONS_00020964-exon-sc0000374-1510915933:285076..285333TCONS_00020964-exon-sc0000374-1510915933:285076..285333Clytia hemisphaericaexon
TCONS_00020964-exon-sc0000374-1491911889:295534..295758TCONS_00020964-exon-sc0000374-1491911889:295534..295758Clytia hemisphaericaexon
TCONS_00020964-exon-sc0000374-1491911889:289195..289309TCONS_00020964-exon-sc0000374-1491911889:289195..289309Clytia hemisphaericaexon
TCONS_00020964-exon-sc0000374-1491911889:288173..288307TCONS_00020964-exon-sc0000374-1491911889:288173..288307Clytia hemisphaericaexon
TCONS_00020964-exon-sc0000374-1491911889:287490..287606TCONS_00020964-exon-sc0000374-1491911889:287490..287606Clytia hemisphaericaexon
TCONS_00020964-exon-sc0000374-1491911889:286273..286390TCONS_00020964-exon-sc0000374-1491911889:286273..286390Clytia hemisphaericaexon
TCONS_00020964-exon-sc0000374-1491911889:285076..285333TCONS_00020964-exon-sc0000374-1491911889:285076..285333Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000374supercontigsc0000374:285076..295758 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.2829	12.1302	2.82938	1.48594	4.79285	4.49894	6.42271	8.59441	5.27856	7.34961	6.92052	4.09291	3.32821	3.05947	6.37526	11.8793	12.9933	12.193	1.63311	1.72736	5.83611	5.77254	20.7939	20.0715	7.27521	7.41574	17.1905	21.5967	13.5827	14.7154
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002297DNA-dir_DNA_pol_A_mt
IPR001098DNA-dir_DNA_pol_A_palm_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005760gamma DNA polymerase complex
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003887DNA-directed DNA polymerase activity
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006260 DNA replication
cellular_component GO:0005760 gamma DNA polymerase complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003887 DNA-directed DNA polymerase activity
Blast
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BLAST of TCONS_00020964 vs. Swiss-Prot (Human)
Match: DPOG1 (DNA polymerase subunit gamma-1 OS=Homo sapiens GN=POLG PE=1 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 1.938e-85
Identity = 136/226 (60.18%), Postives = 171/226 (75.66%), Query Frame = 2 
Query:   83 LAEELEIMLDFND--LISYVSLKRLLQEHGLSWSKRAQLVDPQHVWFDGSESDMFNKLESIALSEQPRTPVLNCLITKALFPKHVENHYKTSRVNWVVQSSAVDYLHLMLTSMAWLIKEYNIDARFCVSIHDEVRYIVKDEDKYRLALALQITNLLTRSMFAYKLNLNDLPQSVAFFSSVDIDKVLRKEVDLDCVTPSNPLGLQEGHGIGKGESLDIYQLLERTRG 754
            L  EL + +D  +   IS   L+++ +E       +   V  +  W  G+ES+MFNKLESIA S+ PRTPVL C I++AL P  V+  + TSRVNWVVQSSAVDYLHLML +M WL +E+ ID RFC+SIHDEVRY+V++ED+YR ALALQITNLLTR MFAYKL LNDLPQSVAFFS+VDID+ LRKEV +DC TPSNP G++  +GI +GE+LDIYQ++E T+G
Sbjct: 1004 LVRELNLPVDRTEGGWISLQDLRKVQRETARKSQWKKWEVVAERAWKGGTESEMFNKLESIATSDIPRTPVLGCCISRALEPSAVQEEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCMFAYKLGLNDLPQSVAFFSAVDIDRCLRKEVTMDCKTPSNPTGMERRYGIPQGEALDIYQIIELTKG 1229
The following BLAST results are available for this feature:
BLAST of TCONS_00020964 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DPOG11.938e-8560.18DNA polymerase subunit gamma-1 OS=Homo sapiens GN=... [more]
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