TCONS_00020964-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00020964-protein
Unique NameTCONS_00020964-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length221

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00020964-protein ID=TCONS_00020964-protein|Name=TCONS_00020964-protein|organism=Clytia hemisphaerica|type=polypeptide|length=221bp
MLDFNDLISYVSLKRLLQEHGLSWSKRAQLVDPQHVWFDGSESDMFNKLE
SIALSEQPRTPVLNCLITKALFPKHVENHYKTSRVNWVVQSSAVDYLHLM
LTSMAWLIKEYNIDARFCVSIHDEVRYIVKDEDKYRLALALQITNLLTRS
MFAYKLNLNDLPQSVAFFSSVDIDKVLRKEVDLDCVTPSNPLGLQEGHGI
GKGESLDIYQLLERTRGGKFD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011754XLOC_011754Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00020964TCONS_00020964Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002297DNA-dir_DNA_pol_A_mt
IPR001098DNA-dir_DNA_pol_A_palm_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005760gamma DNA polymerase complex
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003887DNA-directed DNA polymerase activity
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006260 DNA replication
cellular_component GO:0005760 gamma DNA polymerase complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003887 DNA-directed DNA polymerase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002297DNA-directed DNA-polymerase, family A, mitochondriaPRINTSPR00867DNAPOLGcoord: 37..50
score: 68.37
coord: 136..151
score: 73.21
coord: 152..168
score: 67.23
coord: 83..99
score: 88.24
IPR001098DNA-directed DNA polymerase, family A, palm domainSMARTSM00482polaultra3coord: 5..133
e-value: 2.1E-6
score: -20.0
IPR001098DNA-directed DNA polymerase, family A, palm domainPFAMPF00476DNA_pol_Acoord: 15..169
e-value: 7.5E-25
score: 87.6
NoneNo IPR availableGENE3D3.30.70.370coord: 12..169
e-value: 4.0E-17
score: 61.8
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 34..180

Blast
[Close]
BLAST of TCONS_00020964-protein vs. Swiss-Prot (Human)
Match: DPOG1 (DNA polymerase subunit gamma-1 OS=Homo sapiens GN=POLG PE=1 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 3.277e-87
Identity = 127/184 (69.02%), Postives = 154/184 (83.70%), Query Frame = 0 
Query:   34 QHVWFDGSESDMFNKLESIALSEQPRTPVLNCLITKALFPKHVENHYKTSRVNWVVQSSAVDYLHLMLTSMAWLIKEYNIDARFCVSIHDEVRYIVKDEDKYRLALALQITNLLTRSMFAYKLNLNDLPQSVAFFSSVDIDKVLRKEVDLDCVTPSNPLGLQEGHGIGKGESLDIYQLLERTRG 217
            +  W  G+ES+MFNKLESIA S+ PRTPVL C I++AL P  V+  + TSRVNWVVQSSAVDYLHLML +M WL +E+ ID RFC+SIHDEVRY+V++ED+YR ALALQITNLLTR MFAYKL LNDLPQSVAFFS+VDID+ LRKEV +DC TPSNP G++  +GI +GE+LDIYQ++E T+G
Sbjct: 1046 ERAWKGGTESEMFNKLESIATSDIPRTPVLGCCISRALEPSAVQEEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCMFAYKLGLNDLPQSVAFFSAVDIDRCLRKEVTMDCKTPSNPTGMERRYGIPQGEALDIYQIIELTKG 1229
The following BLAST results are available for this feature:
BLAST of TCONS_00020964-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DPOG13.277e-8769.02DNA polymerase subunit gamma-1 OS=Homo sapiens GN=... [more]
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