TCONS_00020931 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020931
Unique NameTCONS_00020931
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1789

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020931 ID=TCONS_00020931|Name=TCONS_00020931|organism=Clytia hemisphaerica|type=transcript|length=1789bp
TTAGAAAATAAAACGCAATTCAAAGTTGGATAAAAAATGGAACCAAAAAT
TATGAGCAACATCCCTAACCTAAAATCCGAATTCCCATCTATGAAATCCG
ATTTTTCAATGGCTTCAATTTTGCTGGAAGAAAAAGATAAGGAAAAAGCG
AAACCAAAACCGATTATCCCGTGCAGATTGGAAAATATAAAGGACACGCC
ATGGTTGAGACTGAATAAGAAAATAGCCGCAGATTTATCTTCGAGAGTGA
AACCAAGGATTGAtaatatcgggaaatcgggaaatggAGGGATCAGAGTG
AGGCTAGATGAAATGGGATTGTGGAAAAGTTTTCATCAGTTGACCAATGA
GATGATTGTCACCAAAAATGGAAGACGAATGTTTCCAGTACTAAAAACAT
CCATTCAAGGATTGGACCCTAATGCGATGTATTCCATAATGTTGGACTTT
GTTCCTGTAGATGAACACCGGTGGAAATTCGTCAATGGGGAGTGGTCCCG
TGGTGGAAAACCGGAACCCACATCAAGTTCCCGGGTGTATGTTCATCCGG
ACTCACCTAACTTCGGAGCACATTGGATGAAAAATTCCATCGTTTTTTCG
AAAGTAAAACTTACcaataaagaaaataacaataatcaAGTGGTGATGCT
GAATTCACTGCACAAATACGAACCACGTATGCATGTTTTAAAGGTGGGTA
GCAAAGAATCAGAAAGAACGGTTTCCACTCACTCATTTGAAGAAACAGTT
TTTATCGCTGTCACTGCTTACCAAAATGAAGAGATCACATCACTAAAGAT
CAAATACAATCCATTCGCAAAAGCTTTCTTAGACGCCAAAGAACGTTCAG
AGCAACAAATCGCAACCCACCCAAGACGTTTTGAATTTCCTTGCATACCG
CCACCAACGGTCGGGGGTCCAGGAGCCCCATGTAGATGCAGCTTAGATGG
ATACCCTTTCCATCGGCACCATCCTTCGTCCCCGCCAGAGTATCCCAGGT
CCTTTAGTTATCCTTACGCAACAATTTATGAACATGATGGCAAGCAACCA
AGGGCGGTTCATTATGGAACGAGACTACACCCATATTCTCCACCCTCGAG
tgtttATCCATTTATGACGCCATCTCCGCCCCCTCAACTCCCGCCACAGT
GTCATCCTCCAATCAAACCGACCTTCTTTGCAGAAGATTTTCAAAGAACA
CGGCATTCCTCTTCATCCTCAACAAATCACCGGTCATGCTCAATACCGGG
CTGCTCGTGTAACGGAGCCAACCGATATCCTTCTATATCTGTTCCTTATC
CGCATTATAAAAGACCATACGATACGGAATCACTTCATTTAAAATCACCG
GTACAACCGAATGATACAAGACAGCGTAGATATAGTACTACACCAGATAT
TGAGAACATTGAACAATCTTCAAGAGAAAATTCAAGGGGAAGCTCACCAA
GTATCTCCCCGACACTTAAACGATCTAGAAATGATTCTTAACCCTATTTA
TACTTAGGTTTTAGGGGTGGCTCAAAACTACGGGGGCTGTTCCTGTActa
ccccttaacttttgatctagtcggtctttttcgatgaaatttggtacaca
agatttttttgatgacgtcactcaaaGTGAGGAAAAACctaaatttcctt
tgttcttataaaagctattgtattctaacaaaggctttagaaaaagttTC
TCTGAATCTAGACAGCTTGTTTTATCctcaatattcaataaattacggtt
taaacgatatatttgacataaaaaataaatttgtatcgG
Run BLAST on NCBI

protein sequence of TCONS_00020931-protein

>TCONS_00020931-protein ID=TCONS_00020931-protein|Name=TCONS_00020931-protein|organism=Clytia hemisphaerica|type=polypeptide|length=484bp
MEPKIMSNIPNLKSEFPSMKSDFSMASILLEEKDKEKAKPKPIIPCRLEN
IKDTPWLRLNKKIAADLSSRVKPRIDNIGKSGNGGIRVRLDEMGLWKSFH
QLTNEMIVTKNGRRMFPVLKTSIQGLDPNAMYSIMLDFVPVDEHRWKFVN
GEWSRGGKPEPTSSSRVYVHPDSPNFGAHWMKNSIVFSKVKLTNKENNNN
QVVMLNSLHKYEPRMHVLKVGSKESERTVSTHSFEETVFIAVTAYQNEEI
TSLKIKYNPFAKAFLDAKERSEQQIATHPRRFEFPCIPPPTVGGPGAPCR
CSLDGYPFHRHHPSSPPEYPRSFSYPYATIYEHDGKQPRAVHYGTRLHPY
SPPSSVYPFMTPSPPPQLPPQCHPPIKPTFFAEDFQRTRHSSSSSTNHRS
CSIPGCSCNGANRYPSISVPYPHYKRPYDTESLHLKSPVQPNDTRQRRYS
TTPDIENIEQSSRENSRGSSPSISPTLKRSRNDS
Run BLAST on NCBI

transcript from alignment at sc0000374:62777..72925+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020931 ID=TCONS_00020931|Name=TCONS_00020931|organism=Clytia hemisphaerica|type=transcript|length=10149bp|location=Sequence derived from alignment at sc0000374:62777..72925+ (Clytia hemisphaerica)
TTAGAAAATAAAACGCAATTCAAAGTTGGATAAAAAATGGAACCAAAAAT
TATGAGCAACATCCCTAACCTAAAATCCGAATTCCCATCTATGAAATCCG
ATTTTTCAATGGCTTCAATTTTGCTGGAAGAAAAAGATAAGGAAAAAGCG
AAACCAAAACCGATTATCCCGTGCAGATTGGAAAATATAAAGGACACGCC
ATGGTTGAGACTGAATAAGAAAATAGCCGCAGATTTATCTTCGAGAGTGA
AACCAAGGATTGAtaatatcgggaaatcgggaaatggAGGGATCAGAGTG
AGGCTAGATGAAATGGGATTGTGGAAAAGTTTTCATCAGTTGACCAATGA
GATGATTGTCACCAAAAATGGAAGGTAAAAGAATTAGAATTATTTGAAGC
CACATTTATCATATTCCTTTACACAGTTGAATTTTTTcatgttcttttca
aatttcacggAAAAAACTAACAGTAAATTAATAAGCTCATTCTTACCTTC
ccaacgataccaaactttgaagattgaaaatttagtgcacacttatcgtg
aatagaatTTAGATAAGGTAACTGCTCACAGATTTCTCGtggaagtgtgt
ccagttttgaagtacagttgacgctcttcaATTTGAcgttcgatacgctc
cattattcgataatattgaaagtcactgtcaaAAAGCAACTCTCTTAAAC
Gacactctactattcgatacgctccctcttgatgaaaatcctttgatcct
tgaaaatcgaattagaggaCGCCAACAGTCCGCCGTGTTGTTTACTAATT
TACTTTAGTTTACCGAacgttcaaatttcaaaacatctgATTTGAAAACA
AGAGAACTGGCTAGTTAGCTTAATTTTGGACACGCTTCCTTTTATATGAG
AAGCCCGATCCTGTCAAATTGTTAAGAGATCAGTGATCCAGTCAAATTAT
TAAGAGATCAGTGTTTGAGGCTCATCTTTATGCCTGGATTCAATTGCCAt
ctatattttatctttttaccAATCAACTTCTTCGATCTcattttgaataa
caaactaaacctcttaaaaaaattcagtggatTTCTGAGTTTAGAGAAGA
AATACTTTAGAATAATCTTCAAACATTTCAAACAGTCGATTTTCAATTCC
CCTTTGCATTTAGCTCCTTCGTTTTGGTAAGAATCTCAACGGTTgactga
gacagggatgtgctATTACTCGCGAGCATTCGAGTCATAAAACGGATTGc
aacttcaaaattttcaatttctaatttctgAGTTAAAATCTTCTGTTCTT
TTAATCATATTTAGACGAATGTTTCCAGTACTAAAAACATCCATTCAAGG
ATTGGACCCTAATGCGATGTATTCCATAATGTTGGACTTTGTTCCTGTAG
ATGAACACCGGTGGAAATTCGTCAATGGGGAGTGGTCCCGTGGTGGAAAA
CCGGAACCCACATCAAGTTCCCGGGTGTATGTTCATCCGGACTCACCTAA
CTTCGGAGCACATTGGATGAAAAATTCCATCGTTTTTTCGAAAGTAAAAC
TTACcaataaagaaaataacaataatcaAGTGGTAAGACTTACACTAAAA
ATCCAtatcctttttgaaaaaaccttCAATTCCTAAATTTCTGCCTGTAA
ACCAGGCCAATACACTGGCGGaattaagacaatagagcaagtacgtcgga
aaaatgctaaggagtgcaacgctcgttaaaaacTGAAATTACAGTTACAa
atctgataagttcgacagggTCTAAAGTCACTTTGTCACCCAGGGAAATT
CAGTTATTGTCTATTATTTGTTGGTTAGTTAACCATGTAACCCATAttat
ataaagaaaaaagtagTATTCGATATTCTCATGCTTTAAAACACCAGGGT
TtggtgaagctatgaatgccatcctcagaagcttaCAGTTACAaatctga
taagttcgacagggTCTAAAGTCACTTTGTAACCCAGGGAAATTCAGTTA
GTACCAAATACTCATGGCACTAAATTGTTTGCGTCGTTCACTCTTCAATT
TAACAAATCAACCTACTCGAAtgaatttcagccaaatcgaatgGGCTAAT
CTCTATATTTGTCTGCAAATCATGTTTATAATTATCCAAACCTACAACtg
attaaaaataccaaatcCTTCCCAGCCCCAGTGCTCGATATTGATTTCAT
GCGATTTCAAAAAGTAATGGATgctaaaaaaaaagtgaaatcaaTGTCTA
ATTTTCAGGTGATGCTGAATTCACTGCACAAATACGAACCACGTATGCAT
GTTTTAAAGGTGGGTAGCAAAGAATCAGAAAGAACGGTTTCCACTCACTC
ATTTGAAGAAACAGTTTTTATCGCTGTCACTGCTTACCAAAATGAAGAGG
TGAGTTTGGTATCCTGCAAACTGACCCTGTAAATGCAGGTCAATCACTAT
TTTCACACTTCATGTTGACACTTCATTCTAAATTTCATTTCTCcgtattt
tcaaaacatttttttttttattctgccTTCTTATAGAAGCAACTTATATC
CCATCGATCATAAACTACCTATATGGGTTAGCCACACTTTCTAATACGAG
CTTAGAAATAGAATCTACCGTCAGATAAAAAATATGTTCCACTGCAAAAG
ATTCAATGGTGTATGAATATTACAGTGTACAGTTtcgctttttggaccta
ccgggaggtcctttaatttgaccgttgtctgttcgtctgttacaagcttt
tctcgggattggctcattagttttttttaattttttgNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaattttggggggcaaattt
gggccaaaaactacctaaaaataaggttttttggactttgtgcaaaattg
cttcattagtttttcctgatttttggcagaaggatagagtgcaaggtacc
ctaaaatgtggctgaagtaatttttctcagaaaattttttttcgtcataa
aattttcaaaaaaagacgaccaagttacacaatgataaaagaaaataaat
cagacgtttttgcattgttctaaaacttattgtgtttgctcaataccaat
agtaaaatATAGAACACCTACTTTTTgatcaacaggtaggtccattcagc
atgttgcttgttcttCAGGGGTTTGAGTATACCGCATTTGTGTCCCCTGT
ATCTctttgtgtcacagacccactgggaccccagccccactggaagattt
agcaaaaatttcgtccccggtggaaaaatatcaaaatatcacAATCATCC
CTACTGGGTTGTTTAACCTTAAAACATAGAATTTCTAACCCcctgaggaa
aaagttccacaggggttgtgagacaggggtgtcactTGGTATCAAGGGGA
GATCTGTCATTAATTATCACATTTAAAATTGTtaacataaaatcaaaaaa
aaaactattaagTAGAAAATCTATCCAAAATCTAAAAAACTCTACCTGCA
GGGTTTTACGATTACACAAGATTGAATGCATGGTTTGggaaagaaaggag
aaaaataaacacttacagtatatggccccaaaacggagacggcccccaaa
acggaggttttcattaaaatgaagattctgacttgtagatttatcagaat
taaacaatttttgtttattttgaaagaatgatggttatacttaaaaatga
gcctgtttttgctggtttgggacagattcaaaataacatatttgcgtcca
aaggaaatattttaacaccaaaattagataaaaattgcatatagctcact
ctagctccttggatattgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgttaaaggtttt
catgcagcaaaaatttttgtaaaatctcttttcctctagatttgagagaa
atttcaaatttgatcgccgttttgggggccacatactgtacggAAGACCC
TTGTCATCAAAAAGCTTCCCATataattttagtgtttttgaaaaacattc
ctATGCCAATAGGATTATCTTTCTATGTCATCAAGGTGATAAAAACACGC
AGGCATGTTAAGTAGTCTAGCAGATATGCTGAATTGAAGTTTGCAACATT
CGTAGAGAATGAGACTTATCCTTCAGTGAAGTTTTCCCAGggcctttttt
caaatattgtatTTCCGCCCTAACTAACCCTGTGGCGAAGCTGGTAATTT
CGAcgctgaaaaaaatgaaatccttcaattttttttgttgaaaaacaaTA
AACGTGGAATGAGTAGGCGTGGCTTCTGAGGGTAGCAGAGTCAGACATTT
ATGACAGGTCTCAGAATTGAGCTTATTTTGACGTGCAAAATTCTCTCATT
AATCTGAAGTTTAttaaattagtaaatttgatcTCACGATATTAAGTCAC
TTGTATGATTTAGAGAAATTCTTAAGTGCCTTCTCGTAGGGAGTTTTCAC
TGTGTCTGCTAGATTTGGTATTTTCATGTCACTAATCTGAATTTAAAATC
AGCCGTGtcagatttttattacaaaaatggattttatttttctttaaccc
gACGATATCATTTTAATCTCTGGGGACTCAACGAAAGGAGCTTAAAGGAG
ATTGAAGTCTtgtgtttaaaaattttaggaTATTCTTATCACAGGGGCGT
AAATTTAGGTCAACTTTGCTAGTTGGTAGAGTCCAACCTTCTGTGACACA
GGGTGTATCATGTATTATGTACAAGACGTCCACGAATTTTAGACAAATTG
GCAAAGCAATTATTATTTTCCTGGTGTGAATACAAAAAATTCTAGACAAG
GCATCGACAGTTGTGAAGCAAAGataaattaaaatcaataaatctCTCCT
ATCTTCCTAGATCACATCACTAAAGATCAAATACAATCCATTCGCAAAAG
CTTTCTTAGACGCCAAAGAACGTTCAGAGCAACAAATCGCAATCCACCCA
AGACGTTTTGAATTTCCTTGCATACCACCACCAACGGTCGGGGGTCCAGG
AGCCCTATGTAGATGCAGCTTAGATGGATACCCTTTCCATCGGCACCATC
ANagacaatagagcaagtacgtcggaaaaatgctaaggagtgcaacgctc
gttaaaaacTGAAATTACAGTTACAaatctgataagttcgacagggTCTA
AAGTCACTTTGTCACCCAGGGAAATTCAGTTATTGTCTATTATTTGTTGG
TTAGTTAACCATGTAACCCATAttatataaagaaaaaagtagTATTCGAT
ATTCTCATGCTTTAAAACACCAGGGTTtggtgaagctatgaatgccatcc
tcagaagcttaCAGTTACAaatctgataagttcgacagggTCTAAAGTCA
CTTTGTAACCCAGGGAAATTCAGTTAGTACCAAATACTCATGGCACTAAA
TTGTTTGCGTCGTTCACTCTTCAATTTAACAAATCAACCTACTCGAAtga
atttcagccaaatcgaatgGGCTAATCTCTATATTTGTCTGCAAATCATG
TTTATAATTATCCAAACCTACAACtgattaaaaataccaaatcCTTCCCA
GCCCCAGTGCTCGATATTGATTTCATGCGATTTCAAAAAGTAATGGATgc
taaaaaaaaagtgaaatcaaTGTCTAATTTTCAGGTGATGCTGAATTCAC
TGCACAAATACGAACCACGTATGCATGTTTTAAAGGTGGGTAGCAAAGAA
TCAGAAAGAACGGTTTCCACTCACTCATTTGAAGAAACAGTTTTTATCGC
TGTCACTGCTTACCAAAATGAAGAGGTGAGTTTGGTATCCTGCAAACTGA
CCCTGTAAATGCAGGTCAATCACTATTTTCACACTGATTGCCTTCATGTT
GACACAGCAttctaaatttcatttttccgtgttttcaaaacatttttttt
ttaattctgccTTCTTATAGAAGTAACTTATATCCCATCGATCATAAACT
ACCTATGTGGGTTAGCCACACTTTCTAATACGAGCTTAGAAATAGAATCT
ACCGGCAGATAAAAAATATGTTCCACTACAAAAGATTCAATGgtgtccca
gctggcacataacgttgcttcgacgttcatctaacgttatatggacgttg
tgaacgttagatgaacgttgcaacaacgttgtgtgccagttggtGTAAGA
ATATTACAGTGTACAGTTTCGCTTTTTCTTTTCTGGACTCTCGAAAGACT
CTTAAGAACCTTTGAACTGAATGACCGAAATATTCTCTAAGTGAAGGGTA
CGTTgggatttcaaaagttttatgccttcttatttttgccattaTTTGGT
ACACTCGAAGCCAGCATTCTTCAGGGGTTTGAGTATACCACTTGACCCCT
GTATCTctttgtgtcacagacccactaggaccccagccccactaggaccc
cagccccactggaagatttagcaaaaatttcgtccccggtgggaaaatat
caaaatatcacAATCATCCCTACTGGGTTGTTTAACCCTTAAacatagaa
tttctatccccctgaggaaaaagttccaccggggctgtgagacaggggtg
tcactTGGTATCAAGGGGGGAGGGTCTGTCATTAATTATCACAtttaaaa
ttgtcaaaataaaatcaaaaagaaactaTTAAGTAGAAAATCtaactaaa
atctaaaaaactcTACCTGCAGGGTTTTACGATTACACAAGATTGAAAGG
TTTGTGAAAGAGAGGAGGAAAAAAAACACTTACGAAAGACCCTGACGTGt
cgtcatcaaaaaacttttcccatataattttagtgtttttgaaaaacatt
cctATGCCAATAGGATTAGCTTTCTATGTCATCAAGGTGATAAAAACACG
CAGGCATGTTAAGTAGTCTAGCAGATATGCTGAATTGAAGTTTGCAACAT
TCGTAGAGAATGAGACTTATCCTTCAGTGAAGTTTTCCCAGggccttttt
tcaaatattgtatTTCCGCCCTAACTAACCCTGTGGCGAAGCTGGTAATT
TCGAcgctgaaaaaaatgaaatccttcaattttttttgttgaaaaacaaT
AAACGTGGAATGAGTAGGCGTGGCTTCTGAGGGTAGCAGAGTCAGACATT
TATGACAGGTCTCAGAATTGAGCTTATTTTGACGTGCAAAATTCTCTCAT
TAATCTGAAGTTTATTAAATTAgtaaatttaatctcgcgataTTAAGTCA
CTTGTATGATTTAGAGAAATTCTTAAGTGCCTTTTCGTAGGGAGTTTTCA
CTGCGTCTGCTAGATTTGGTATTTTCATGTCAATAATCTGAATTTAAAAT
CAGTCGTGtcagatttttattacaaaaatggATTTTATTTGTCTTTAACC
CGACGATATCATTTTAATCTCTGGGGACTCAACGAAAGGAGCTTAAAGGA
GATTGAAGTCTtgtgtttaaaaattttaggaTATTCTTATCACAGGGGCG
TAAATTTAGGTCAACTTTGCTAGTTGGTAGAGTCCAACCTTCTGTGACAC
AGGGTGTATCATGTATTATGTACAAGACGTCCACGAATTTTAGACAAATT
GGCAAAGCAATTATTATTTTCCTGGTGTGAATACAAAAAATTCTAGACAA
GGCATCGACAGTTGTGAAGCAAAGataaattaaaatcaataaatctCTCC
TATCTTTCCAGATCACATCACTAAAGATCAAATACAATCCATTCGCAAAA
GCTTTCTTAGACGCCAAAGAACGTTCAGAGCAACAAATCGCAACCCACCC
AAGACGTTTTGAATTTCCTTGCATACCGCCACCAACGGTCGGGGGTCCAG
GAGCCCCATGTAGATGCAGCTTAGATGGATACCCTTTCCATCGGCACCAT
CCTTCGTCCCCGCCAGAGTATCCCAGGTCCTTTAGTTATCCTTACGCAAC
AATTTATGAACATGATGGCAAGCAACCAAGGGCGGTTCATTATGGAACGA
GACTACACCCATATTCTCCACCCTCGAGtgtttgtaagtatttttgcaAC
TctctttttctcaattttttataGTAATTTTGTAACCTCATTCTCCCCCT
CCATCTTCAGTCAATAATTTTGCACTCTTCATTTCGAACTTTGTTGTTTG
TTATAGTACTTCAGGACACCCTTGTCTCATCTTTGATTCTAAATCGAGAT
TTGCAagcaaatgtttcatttcaacTTTCTGCATTCTGGTACTAGTGAGT
tccttttgacattttttaaccTACATTAACTATAACCAACTGTGTTATTT
CTTCTTCTATTTAAGATCCATTTATGACGCCATCTCCGCCCCCTCAACTC
CCGCCACAGTGTCATCCTCCAATCAAACCGACCTTCTTTGCAGAAGATTT
TCAAAGAACACGGCATTCCTCTTCATCCTCAACAAATCACCGGTCATGCT
CAATACCGGGCTGCTCGTGTAACGGAGCCAACCGATATCCTTCTATATCT
GTTCCTTATCCGCATTATAAAAGACCATACGATACGGAATCACTTCATTT
AAAATCACCGGTACAACCGAATGATACAAGACAGCGTAGATATAGTACTA
CACCAGATATTGAGAACATTGAACAATCTTCAAGAGAAAATTCAAGGGGA
AGCTCACCAAGTATCTCCCCGACACTTAAACGATCTAGAAATGATTCTTA
ACCCTATTTATACTTAGGTTTTAGGGGTGGCTCAAAACTACGGGGGCTGT
TCCTGTActaccccttaacttttgatctagtcggtctttttcgatgaaat
ttggtacacaagatttttttgatgacgtcactcaaaGTGAGGAAAAACct
aaatttcctttgttcttataaaagctattgtattctaacaaaggctttag
aaaaagttTCTCTGAATCTAGACAGCTTGTTTTATCctcaatattcaata
aattacggtttaaacgatatatttgacataaaaaataaatttgtatcgG

Coding sequence (CDS) from alignment at sc0000374:62777..72925+

>TCONS_00020931 ID=TCONS_00020931|Name=TCONS_00020931|organism=Clytia hemisphaerica|type=CDS|length=8730bp|location=Sequence derived from alignment at sc0000374:62777..72925+ (Clytia hemisphaerica)
ATGGAACCAAAAATTATGAGCAACATCCCTAACCTAAAATCCGAATTCCC
ATCTATGAAATCCGATTTTTCAATGGCTTCAATTTTGCTGGAAGAAAAAG
ATAAGGAAAAAGCGAAACCAAAACCGATTATCCCGTGCAGATTGGAAAAT
ATAAAGGACACGCCATGGTTGAGACTGAATAAGAAAATAGCCGCAGATTT
ATCTTCGAGAGTGAAACCAAGGATTGAtaatatcgggaaatcgggaaatg
gAGGGATCAGAGTGAGGCTAGATGAAATGGGATTGTGGAAAAGTTTTCAT
CAGTTGACCAATGAGATGATTGTCACCAAAAATGGAAGACGAATGTTTCC
AGTACTAAAAACATCCATTCAAGGATTGGACCCTAATGCGATGTATTCCA
TAATGTTGGACTTTGTTCCTGTAGATGAACACCGGTGGAAATTCGTCAAT
GGGGAGTGGTCCCGTGGTGGAAAACCGGAACCCACATCAAGTTCCCGGGT
GTATGTTCATCCGGACTCACCTAACTTCGGAGCACATTGGATGAAAAATT
CCATCGTTTTTTCGAAAGTAAAACTTACcaataaagaaaataacaataat
caAGTGGTGATGCTGAATTCACTGCACAAATACGAACCACGTATGCATGT
TTTAAAGGTGGGTAGCAAAGAATCAGAAAGAACGGTTTCCACTCACTCAT
TTGAAGAAACAGTTTTTATCGCTGTCACTGCTTACCAAAATGAAGAGATC
ACATCACTAAAGATCAAATACAATCCATTCGCAAAAGCTTTCTTAGACGC
CAAAGAACGTTCAGAGCAACAAATCGCAACCCACCCAAGACGTTTTGAAT
TTCCTTGCATACCGCCACCAACGGTCGGGGGTCCAGGAGCCCCATGTAGA
TGCAGCTTAGATGGATACCCTTTCCATCGGCACCATCCTTCGTCCCCGCC
AGAGTATCCCAGGTCCTTTAGTTATCCTTACGCAACAATTTATGAACATG
ATGGCAAGCAACCAAGGGCGGTTCATTATGGAACGAGACTACACCCATAT
TCTCCACCCTCGAGtgtttATCCATTTATGACGCCATCTCCGCCCCCTCA
ACTCCCGCCACAGTGTCATCCTCCAATCAAACCGACCTTCTTTGCAGAAG
ATTTTCAAAGAACACGGCATTCCTCTTCATCCTCAACAAATCACCGGTCA
TGCTCAATACCGGGCTGCTCGTGTAACGGAGCCAACCGATATCCTTCTAT
ATCTGTTCCTTATCCGCATTATAAAAGACCATACGATACGGAATCACTTC
ATTTAAAATCACCGGTACAACCGAATGATACAAGACAGCGTAGATATAGT
ACTACACCAGATATTGAGAACATTGAACAATCTTCAAGAGAAAATTCAAG
GGGAAGCTCACCAAGTATCTCCCCGACACTTAAACGATCTAGAAATGATT
CTTAAATGGAACCAAAAATTATGAGCAACATCCCTAACCTAAAATCCGAA
TTCCCATCTATGAAATCCGATTTTTCAATGGCTTCAATTTTGCTGGAAGA
AAAAGATAAGGAAAAAGCGAAACCAAAACCGATTATCCCGTGCAGATTGG
AAAATATAAAGGACACGCCATGGTTGAGACTGAATAAGAAAATAGCCGCA
GATTTATCTTCGAGAGTGAAACCAAGGATTGAtaatatcgggaaatcggg
aaatggAGGGATCAGAGTGAGGCTAGATGAAATGGGATTGTGGAAAAGTT
TTCATCAGTTGACCAATGAGATGATTGTCACCAAAAATGGAAGACGAATG
TTTCCAGTACTAAAAACATCCATTCAAGGATTGGACCCTAATGCGATGTA
TTCCATAATGTTGGACTTTGTTCCTGTAGATGAACACCGGTGGAAATTCG
TCAATGGGGAGTGGTCCCGTGGTGGAAAACCGGAACCCACATCAAGTTCC
CGGGTGTATGTTCATCCGGACTCACCTAACTTCGGAGCACATTGGATGAA
AAATTCCATCGTTTTTTCGAAAGTAAAACTTACcaataaagaaaataaca
ataatcaAGTGGTGATGCTGAATTCACTGCACAAATACGAACCACGTATG
CATGTTTTAAAGGTGGGTAGCAAAGAATCAGAAAGAACGGTTTCCACTCA
CTCATTTGAAGAAACAGTTTTTATCGCTGTCACTGCTTACCAAAATGAAG
AGATCACATCACTAAAGATCAAATACAATCCATTCGCAAAAGCTTTCTTA
GACGCCAAAGAACGTTCAGAGCAACAAATCGCAACCCACCCAAGACGTTT
TGAATTTCCTTGCATACCGCCACCAACGGTCGGGGGTCCAGGAGCCCCAT
GTAGATGCAGCTTAGATGGATACCCTTTCCATCGGCACCATCCTTCGTCC
CCGCCAGAGTATCCCAGGTCCTTTAGTTATCCTTACGCAACAATTTATGA
ACATGATGGCAAGCAACCAAGGGCGGTTCATTATGGAACGAGACTACACC
CATATTCTCCACCCTCGAGtgtttATCCATTTATGACGCCATCTCCGCCC
CCTCAACTCCCGCCACAGTGTCATCCTCCAATCAAACCGACCTTCTTTGC
AGAAGATTTTCAAAGAACACGGCATTCCTCTTCATCCTCAACAAATCACC
GGTCATGCTCAATACCGGGCTGCTCGTGTAACGGAGCCAACCGATATCCT
TCTATATCTGTTCCTTATCCGCATTATAAAAGACCATACGATACGGAATC
ACTTCATTTAAAATCACCGGTACAACCGAATGATACAAGACAGCGTAGAT
ATAGTACTACACCAGATATTGAGAACATTGAACAATCTTCAAGAGAAAAT
TCAAGGGGAAGCTCACCAAGTATCTCCCCGACACTTAAACGATCTAGAAA
TGATTCTTAAATGGAACCAAAAATTATGAGCAACATCCCTAACCTAAAAT
CCGAATTCCCATCTATGAAATCCGATTTTTCAATGGCTTCAATTTTGCTG
GAAGAAAAAGATAAGGAAAAAGCGAAACCAAAACCGATTATCCCGTGCAG
ATTGGAAAATATAAAGGACACGCCATGGTTGAGACTGAATAAGAAAATAG
CCGCAGATTTATCTTCGAGAGTGAAACCAAGGATTGAtaatatcgggaaa
tcgggaaatggAGGGATCAGAGTGAGGCTAGATGAAATGGGATTGTGGAA
AAGTTTTCATCAGTTGACCAATGAGATGATTGTCACCAAAAATGGAAGAC
GAATGTTTCCAGTACTAAAAACATCCATTCAAGGATTGGACCCTAATGCG
ATGTATTCCATAATGTTGGACTTTGTTCCTGTAGATGAACACCGGTGGAA
ATTCGTCAATGGGGAGTGGTCCCGTGGTGGAAAACCGGAACCCACATCAA
GTTCCCGGGTGTATGTTCATCCGGACTCACCTAACTTCGGAGCACATTGG
ATGAAAAATTCCATCGTTTTTTCGAAAGTAAAACTTACcaataaagaaaa
taacaataatcaAGTGGTGATGCTGAATTCACTGCACAAATACGAACCAC
GTATGCATGTTTTAAAGGTGGGTAGCAAAGAATCAGAAAGAACGGTTTCC
ACTCACTCATTTGAAGAAACAGTTTTTATCGCTGTCACTGCTTACCAAAA
TGAAGAGATCACATCACTAAAGATCAAATACAATCCATTCGCAAAAGCTT
TCTTAGACGCCAAAGAACGTTCAGAGCAACAAATCGCAACCCACCCAAGA
CGTTTTGAATTTCCTTGCATACCGCCACCAACGGTCGGGGGTCCAGGAGC
CCCATGTAGATGCAGCTTAGATGGATACCCTTTCCATCGGCACCATCCTT
CGTCCCCGCCAGAGTATCCCAGGTCCTTTAGTTATCCTTACGCAACAATT
TATGAACATGATGGCAAGCAACCAAGGGCGGTTCATTATGGAACGAGACT
ACACCCATATTCTCCACCCTCGAGtgtttATCCATTTATGACGCCATCTC
CGCCCCCTCAACTCCCGCCACAGTGTCATCCTCCAATCAAACCGACCTTC
TTTGCAGAAGATTTTCAAAGAACACGGCATTCCTCTTCATCCTCAACAAA
TCACCGGTCATGCTCAATACCGGGCTGCTCGTGTAACGGAGCCAACCGAT
ATCCTTCTATATCTGTTCCTTATCCGCATTATAAAAGACCATACGATACG
GAATCACTTCATTTAAAATCACCGGTACAACCGAATGATACAAGACAGCG
TAGATATAGTACTACACCAGATATTGAGAACATTGAACAATCTTCAAGAG
AAAATTCAAGGGGAAGCTCACCAAGTATCTCCCCGACACTTAAACGATCT
AGAAATGATTCTTAAATGGAACCAAAAATTATGAGCAACATCCCTAACCT
AAAATCCGAATTCCCATCTATGAAATCCGATTTTTCAATGGCTTCAATTT
TGCTGGAAGAAAAAGATAAGGAAAAAGCGAAACCAAAACCGATTATCCCG
TGCAGATTGGAAAATATAAAGGACACGCCATGGTTGAGACTGAATAAGAA
AATAGCCGCAGATTTATCTTCGAGAGTGAAACCAAGGATTGAtaatatcg
ggaaatcgggaaatggAGGGATCAGAGTGAGGCTAGATGAAATGGGATTG
TGGAAAAGTTTTCATCAGTTGACCAATGAGATGATTGTCACCAAAAATGG
AAGACGAATGTTTCCAGTACTAAAAACATCCATTCAAGGATTGGACCCTA
ATGCGATGTATTCCATAATGTTGGACTTTGTTCCTGTAGATGAACACCGG
TGGAAATTCGTCAATGGGGAGTGGTCCCGTGGTGGAAAACCGGAACCCAC
ATCAAGTTCCCGGGTGTATGTTCATCCGGACTCACCTAACTTCGGAGCAC
ATTGGATGAAAAATTCCATCGTTTTTTCGAAAGTAAAACTTACcaataaa
gaaaataacaataatcaAGTGGTGATGCTGAATTCACTGCACAAATACGA
ACCACGTATGCATGTTTTAAAGGTGGGTAGCAAAGAATCAGAAAGAACGG
TTTCCACTCACTCATTTGAAGAAACAGTTTTTATCGCTGTCACTGCTTAC
CAAAATGAAGAGATCACATCACTAAAGATCAAATACAATCCATTCGCAAA
AGCTTTCTTAGACGCCAAAGAACGTTCAGAGCAACAAATCGCAACCCACC
CAAGACGTTTTGAATTTCCTTGCATACCGCCACCAACGGTCGGGGGTCCA
GGAGCCCCATGTAGATGCAGCTTAGATGGATACCCTTTCCATCGGCACCA
TCCTTCGTCCCCGCCAGAGTATCCCAGGTCCTTTAGTTATCCTTACGCAA
CAATTTATGAACATGATGGCAAGCAACCAAGGGCGGTTCATTATGGAACG
AGACTACACCCATATTCTCCACCCTCGAGtgtttATCCATTTATGACGCC
ATCTCCGCCCCCTCAACTCCCGCCACAGTGTCATCCTCCAATCAAACCGA
CCTTCTTTGCAGAAGATTTTCAAAGAACACGGCATTCCTCTTCATCCTCA
ACAAATCACCGGTCATGCTCAATACCGGGCTGCTCGTGTAACGGAGCCAA
CCGATATCCTTCTATATCTGTTCCTTATCCGCATTATAAAAGACCATACG
ATACGGAATCACTTCATTTAAAATCACCGGTACAACCGAATGATACAAGA
CAGCGTAGATATAGTACTACACCAGATATTGAGAACATTGAACAATCTTC
AAGAGAAAATTCAAGGGGAAGCTCACCAAGTATCTCCCCGACACTTAAAC
GATCTAGAAATGATTCTTAAATGGAACCAAAAATTATGAGCAACATCCCT
AACCTAAAATCCGAATTCCCATCTATGAAATCCGATTTTTCAATGGCTTC
AATTTTGCTGGAAGAAAAAGATAAGGAAAAAGCGAAACCAAAACCGATTA
TCCCGTGCAGATTGGAAAATATAAAGGACACGCCATGGTTGAGACTGAAT
AAGAAAATAGCCGCAGATTTATCTTCGAGAGTGAAACCAAGGATTGAtaa
tatcgggaaatcgggaaatggAGGGATCAGAGTGAGGCTAGATGAAATGG
GATTGTGGAAAAGTTTTCATCAGTTGACCAATGAGATGATTGTCACCAAA
AATGGAAGACGAATGTTTCCAGTACTAAAAACATCCATTCAAGGATTGGA
CCCTAATGCGATGTATTCCATAATGTTGGACTTTGTTCCTGTAGATGAAC
ACCGGTGGAAATTCGTCAATGGGGAGTGGTCCCGTGGTGGAAAACCGGAA
CCCACATCAAGTTCCCGGGTGTATGTTCATCCGGACTCACCTAACTTCGG
AGCACATTGGATGAAAAATTCCATCGTTTTTTCGAAAGTAAAACTTACca
ataaagaaaataacaataatcaAGTGGTGATGCTGAATTCACTGCACAAA
TACGAACCACGTATGCATGTTTTAAAGGTGGGTAGCAAAGAATCAGAAAG
AACGGTTTCCACTCACTCATTTGAAGAAACAGTTTTTATCGCTGTCACTG
CTTACCAAAATGAAGAGATCACATCACTAAAGATCAAATACAATCCATTC
GCAAAAGCTTTCTTAGACGCCAAAGAACGTTCAGAGCAACAAATCGCAAC
CCACCCAAGACGTTTTGAATTTCCTTGCATACCGCCACCAACGGTCGGGG
GTCCAGGAGCCCCATGTAGATGCAGCTTAGATGGATACCCTTTCCATCGG
CACCATCCTTCGTCCCCGCCAGAGTATCCCAGGTCCTTTAGTTATCCTTA
CGCAACAATTTATGAACATGATGGCAAGCAACCAAGGGCGGTTCATTATG
GAACGAGACTACACCCATATTCTCCACCCTCGAGtgtttATCCATTTATG
ACGCCATCTCCGCCCCCTCAACTCCCGCCACAGTGTCATCCTCCAATCAA
ACCGACCTTCTTTGCAGAAGATTTTCAAAGAACACGGCATTCCTCTTCAT
CCTCAACAAATCACCGGTCATGCTCAATACCGGGCTGCTCGTGTAACGGA
GCCAACCGATATCCTTCTATATCTGTTCCTTATCCGCATTATAAAAGACC
ATACGATACGGAATCACTTCATTTAAAATCACCGGTACAACCGAATGATA
CAAGACAGCGTAGATATAGTACTACACCAGATATTGAGAACATTGAACAA
TCTTCAAGAGAAAATTCAAGGGGAAGCTCACCAAGTATCTCCCCGACACT
TAAACGATCTAGAAATGATTCTTAAATGGAACCAAAAATTATGAGCAACA
TCCCTAACCTAAAATCCGAATTCCCATCTATGAAATCCGATTTTTCAATG
GCTTCAATTTTGCTGGAAGAAAAAGATAAGGAAAAAGCGAAACCAAAACC
GATTATCCCGTGCAGATTGGAAAATATAAAGGACACGCCATGGTTGAGAC
TGAATAAGAAAATAGCCGCAGATTTATCTTCGAGAGTGAAACCAAGGATT
GAtaatatcgggaaatcgggaaatggAGGGATCAGAGTGAGGCTAGATGA
AATGGGATTGTGGAAAAGTTTTCATCAGTTGACCAATGAGATGATTGTCA
CCAAAAATGGAAGACGAATGTTTCCAGTACTAAAAACATCCATTCAAGGA
TTGGACCCTAATGCGATGTATTCCATAATGTTGGACTTTGTTCCTGTAGA
TGAACACCGGTGGAAATTCGTCAATGGGGAGTGGTCCCGTGGTGGAAAAC
CGGAACCCACATCAAGTTCCCGGGTGTATGTTCATCCGGACTCACCTAAC
TTCGGAGCACATTGGATGAAAAATTCCATCGTTTTTTCGAAAGTAAAACT
TACcaataaagaaaataacaataatcaAGTGGTGATGCTGAATTCACTGC
ACAAATACGAACCACGTATGCATGTTTTAAAGGTGGGTAGCAAAGAATCA
GAAAGAACGGTTTCCACTCACTCATTTGAAGAAACAGTTTTTATCGCTGT
CACTGCTTACCAAAATGAAGAGATCACATCACTAAAGATCAAATACAATC
CATTCGCAAAAGCTTTCTTAGACGCCAAAGAACGTTCAGAGCAACAAATC
GCAACCCACCCAAGACGTTTTGAATTTCCTTGCATACCGCCACCAACGGT
CGGGGGTCCAGGAGCCCCATGTAGATGCAGCTTAGATGGATACCCTTTCC
ATCGGCACCATCCTTCGTCCCCGCCAGAGTATCCCAGGTCCTTTAGTTAT
CCTTACGCAACAATTTATGAACATGATGGCAAGCAACCAAGGGCGGTTCA
TTATGGAACGAGACTACACCCATATTCTCCACCCTCGAGtgtttATCCAT
TTATGACGCCATCTCCGCCCCCTCAACTCCCGCCACAGTGTCATCCTCCA
ATCAAACCGACCTTCTTTGCAGAAGATTTTCAAAGAACACGGCATTCCTC
TTCATCCTCAACAAATCACCGGTCATGCTCAATACCGGGCTGCTCGTGTA
ACGGAGCCAACCGATATCCTTCTATATCTGTTCCTTATCCGCATTATAAA
AGACCATACGATACGGAATCACTTCATTTAAAATCACCGGTACAACCGAA
TGATACAAGACAGCGTAGATATAGTACTACACCAGATATTGAGAACATTG
AACAATCTTCAAGAGAAAATTCAAGGGGAAGCTCACCAAGTATCTCCCCG
ACACTTAAACGATCTAGAAATGATTCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011741XLOC_011741Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020931-proteinTCONS_00020931-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020931-exon-sc0000374-1491911889:62777..63150TCONS_00020931-exon-sc0000374-1491911889:62777..63150Clytia hemisphaericaexon
TCONS_00020931-exon-sc0000374-1510915933:62777..63150TCONS_00020931-exon-sc0000374-1510915933:62777..63150Clytia hemisphaericaexon
TCONS_00020931-exon-sc0000374-1575043694:62777..63150TCONS_00020931-exon-sc0000374-1575043694:62777..63150Clytia hemisphaericaexon
TCONS_00020931-exon-sc0000374-1491911889:64091..64358TCONS_00020931-exon-sc0000374-1491911889:64091..64358Clytia hemisphaericaexon
TCONS_00020931-exon-sc0000374-1510915933:64091..64358TCONS_00020931-exon-sc0000374-1510915933:64091..64358Clytia hemisphaericaexon
TCONS_00020931-exon-sc0000374-1575043694:64091..64358TCONS_00020931-exon-sc0000374-1575043694:64091..64358Clytia hemisphaericaexon
TCONS_00020931-exon-sc0000374-1491911889:65035..65085TCONS_00020931-exon-sc0000374-1491911889:65035..65085Clytia hemisphaericaexon
TCONS_00020931-exon-sc0000374-1510915933:65035..65085TCONS_00020931-exon-sc0000374-1510915933:65035..65085Clytia hemisphaericaexon
TCONS_00020931-exon-sc0000374-1575043694:65035..65085TCONS_00020931-exon-sc0000374-1575043694:65035..65085Clytia hemisphaericaexon
TCONS_00020931-exon-sc0000374-1491911889:69662..69751TCONS_00020931-exon-sc0000374-1491911889:69662..69751Clytia hemisphaericaexon
TCONS_00020931-exon-sc0000374-1510915933:69662..69751TCONS_00020931-exon-sc0000374-1510915933:69662..69751Clytia hemisphaericaexon
TCONS_00020931-exon-sc0000374-1575043694:69662..69751TCONS_00020931-exon-sc0000374-1575043694:69662..69751Clytia hemisphaericaexon
TCONS_00020931-exon-sc0000374-1491911889:71638..71959TCONS_00020931-exon-sc0000374-1491911889:71638..71959Clytia hemisphaericaexon
TCONS_00020931-exon-sc0000374-1510915933:71638..71959TCONS_00020931-exon-sc0000374-1510915933:71638..71959Clytia hemisphaericaexon
TCONS_00020931-exon-sc0000374-1575043694:71638..71959TCONS_00020931-exon-sc0000374-1575043694:71638..71959Clytia hemisphaericaexon
TCONS_00020931-exon-sc0000374-1491911889:72242..72925TCONS_00020931-exon-sc0000374-1491911889:72242..72925Clytia hemisphaericaexon
TCONS_00020931-exon-sc0000374-1510915933:72242..72925TCONS_00020931-exon-sc0000374-1510915933:72242..72925Clytia hemisphaericaexon
TCONS_00020931-exon-sc0000374-1575043694:72242..72925TCONS_00020931-exon-sc0000374-1575043694:72242..72925Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000374supercontigsc0000374:62777..72925 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00318154	0.00318032	0.0101072	0	0	0.00342035	0	0	0.00220858	0.00731321	0.0668754	0.0245248	0.112356	0.0717357	0.0965373	0.166827	0.622556	0.760652	0.0818663	0.0361603	1.647	0.360209	0.282675	0.500114	1.32861	1.11703	0.0893571	0.0631076	0.0145987	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001699TF_T-box
IPR002070TF_Brachyury
IPR018186TF_T-box_CS
IPR008967p53-like_TF_DNA-bd
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
[Close]
BLAST of TCONS_00020931 vs. Swiss-Prot (Human)
Match: BRAC (Brachyury protein OS=Homo sapiens GN=T PE=1 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 3.745e-89
Identity = 152/260 (58.46%), Postives = 180/260 (69.23%), Query Frame = 1 
Query:  292 IRVRLDEMGLWKSFHQLTNEMIVTKNGRRMFPVLKTSIQGLDPNAMYSIMLDFVPVDEHRWKFVNGEWSRGGKPEPTSSSRVYVHPDSPNFGAHWMKNSIVFSKVKLTNKENNNNQVVMLNSLHKYEPRMHVLKVGSKESERTVSTHSFEETVFIAVTAYQNEEITSLKIKYNPFAKAFLDAKERSE-QQIATHPRRFEFP--------------CIPP----PTVGGP-GAPCRCSLDGYPFHRHHPSSPPEYPRSFSY 1011
            +RV L+E  LW  F +LTNEMIVTKNGRRMFPVLK ++ GLDPNAMYS +LDFV  D HRWK+VNGEW  GGKPEP + S VY+HPDSPNFGAHWMK  + FSKVKLTNK N   Q +MLNSLHKYEPR+H+++VG    +R +++H F ET FIAVTAYQNEEIT+LKIKYNPFAKAFLDAKERS+ +++   P   + P                PP    P  GG    P   S D YP  R H SSP  YP  +++
Sbjct:   42 LRVGLEESELWLRFKELTNEMIVTKNGRRMFPVLKVNVSGLDPNAMYSFLLDFVAADNHRWKYVNGEWVPGGKPEPQAPSCVYIHPDSPNFGAHWMKAPVSFSKVKLTNKLNGGGQ-IMLNSLHKYEPRIHIVRVGGP--QRMITSHCFPETQFIAVTAYQNEEITALKIKYNPFAKAFLDAKERSDHKEMMEEPGDSQQPGYSQWGWLLPGTSTLCPPANPHPQFGGALSLPSTHSCDRYPTLRSHRSSP--YPSPYAH 296
The following BLAST results are available for this feature:
BLAST of TCONS_00020931 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BRAC3.745e-8958.46Brachyury protein OS=Homo sapiens GN=T PE=1 SV=1[more]
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