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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020928 ID=TCONS_00020928|Name=TCONS_00020928|organism=Clytia hemisphaerica|type=transcript|length=4050bpRun BLAST on NCBI transcript from alignment at sc0000374:30798..51354+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020928 ID=TCONS_00020928|Name=TCONS_00020928|organism=Clytia hemisphaerica|type=transcript|length=20557bp|location=Sequence derived from alignment at sc0000374:30798..51354+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00020928 vs. Swiss-Prot (Human)
Match: TSP4 (Thrombospondin-4 OS=Homo sapiens GN=THBS4 PE=1 SV=2) HSP 1 Score: 335.495 bits (859), Expect = 4.443e-104 Identity = 260/511 (50.88%), Postives = 324/511 (63.41%), Query Frame = 3
Query: 1488 SCQRCSAESCIDIDECTLKPPKCDARNSICINREGSYKC-ICKEGFH--NVNGTCRFIGYCQNYNCGPLSV---CVNDRQQKKAVCKCRPGYAGNGIVCGTDYDSDGWPDNDLPCNEERCTADNCKYFPNSDQSXXXXXXXXXXXXXXXXXXXIYNKNDNCVLTPNPKQEDRDLDRVGDKCDNCISMRNFHQLDTDGDGLGDVCDPDRDNDKLRNEKDNCDLIKNPNQKDTDGDGIGDACDNCRDVKNYDQRDLNLNGXXXXXXXXXXXXXXXXXXXXXNCRQIANTDQAXXXXXXXXXXXXXXXXXXXILDEF----DNCVFKFNPLQDDLXXXXXXXXXXXXXXXXXXXXXXXXXPKHRNVTIIDFKTLIYVPLDPHGAAQLDPVWSILNDGHDVHQALNSDPGIAVAPNQLGSMDFTGTFYVNTKRDDDYIGFIFGYQSSSKFYAVMWKQKNQTYWDTTPFPATATAGVSIKVVNSKSGPGKRLRNALWHTGNTTDEVSLLWHDKRXV 2990
S + + + C DIDEC + C NSIC+N GSY+C CK G+ + G C+ C+N P SV C+ +RQ C C G+AG+G +CG D D D +PD +LPC+ C DNCKY PNS Q D D DG GD CD+DAD DGI N+ DNCVL N Q + D D GD CDNC+S+ N Q DTDGDG GD CD D D D ++N DNC N +Q+D DGDG+GDACD+C DV N +Q D++ + +GD+CD D D D D DNC + N+ Q DTD DGIGD CDDD DNDGI D DNC NP Q+D + + +GDIC+ D D D + D D CP++ VT+ DF+ V LDP G AQ+DP W +LN G ++ Q +NSDPG+AV +DF GTF+VNT+ DDDY GFIFGYQ SS FY VMWKQ QTYW TPF A A G+ +K V SK+GPG+ LRN+LWHTG+T+D+V LLW D R V
Sbjct: 368 SFAKSNKQVCTDIDEC--RNGAC-VPNSICVNTLGSYRCGPCKPGYTGDQIRG-CKAERNCRNPELNPCSVNAQCIEERQ-GDVTCVCGVGWAGDGYICGKDVDIDSYPDEELPCSARNCKKDNCKYVPNSGQEDADRDGIGDACDEDADGDGILNEQDNCVLIHNVDQRNSDKDIFGDACDNCLSVLNNDQKDTDGDGRGDACDDDMDGDGIKNILDNCPKFPNRDQRDKDGDGVGDACDSCPDVSNPNQSDVDNDLVGDSCDTNQDSDGDGHQDSTDNCPTVINSAQLDTDKDGIGDECDDDDDNDGIPDLVPPGPDNCRLVPNPAQEDSNSDGVGDICESDFDQDQVIDRIDVCPENAEVTLTDFRAYQTVVLDPEGDAQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFNGVDFEGTFHVNTQTDDDYAGFIFGYQDSSSFYVVMWKQTEQTYWQATPFRAVAEPGIQLKAVKSKTGPGEHLRNSLWHTGDTSDQVRLLWKDSRNV 873 HSP 2 Score: 63.929 bits (154), Expect = 4.443e-104 Identity = 35/86 (40.70%), Postives = 44/86 (51.16%), Query Frame = 1
Query: 1255 HACHEHAICTNTEGDYTCA-CPMGMRGDGFTCTDIDECKYARPCSPMTSCVNLPDGKGFTCTKCPDGYFDTGASGAGIEVAKGVQQ 1509
+ C CT++ + C CP G G+G TC D+DECKY PC P C+NL GF C CP G+ G GI AK +Q
Sbjct: 293 NPCFRGVQCTDSRDGFQCGPCPEGYTGNGITCIDVDECKY-HPCYPGVHCINL--SPGFRCDACPVGFTGPMVQGVGISFAKSNKQ 375 HSP 3 Score: 119.013 bits (297), Expect = 6.166e-27 Identity = 50/97 (51.55%), Postives = 72/97 (74.23%), Query Frame = 2
Query: 2987 RNALWHTGNTTDEVSLLWHDKRFRGWRPKVSYRWKLEHRPDIGLIRLQVNRGQFAMFDTGCIYDNTLRGGKVGMFVFSQEAVVWSDTRIKCNDDVPK 3277
RN+LWHTG+T+D+V LLW D R GW+ KVSYRW L+HRP +G IR++ G + D+G D T+RGG++G+F FSQE ++WS+ + +CND +P+
Sbjct: 850 RNSLWHTGDTSDQVRLLWKDSRNVGWKDKVSYRWFLQHRPQVGYIRVRFYEGSELVADSGVTIDTTMRGGRLGVFCFSQENIIWSNLKYRCNDTIPE 946 HSP 4 Score: 104.375 bits (259), Expect = 2.142e-22 Identity = 62/152 (40.79%), Postives = 82/152 (53.95%), Query Frame = 1
Query: 979 CPDGAECINGVGSYEC-RCKEGYESDGETCVDINECLENPCSEHAKCINRSPGFQCTKCRFGYEGEQIKGLGREFARNNKQVCKDKNECMNGEHACHEHAICTNTEGDYTCA-CPMGMRGDGFTCTDIDECKYAR--------PCSPMTSCV 1404
C G +C + ++C C EGY +G TC+D++EC +PC CIN SPGF+C C G+ G ++G+G FA++NKQVC D +EC NG AC ++IC NT G Y C C G GD I CK R PCS C+
Sbjct: 295 CFRGVQCTDSRDGFQCGPCPEGYTGNGITCIDVDECKYHPCYPGVHCINLSPGFRCDACPVGFTGPMVQGVGISFAKSNKQVCTDIDECRNG--ACVPNSICVNTLGSYRCGPCKPGYTGD-----QIRGCKAERNCRNPELNPCSVNAQCI 439 HSP 5 Score: 94.7449 bits (234), Expect = 1.967e-19 Identity = 62/157 (39.49%), Postives = 79/157 (50.32%), Query Frame = 1
Query: 733 SISGYSCGPCPKGYEGDGITCKDIDECKSNNVCSNLTKCINKEPGHKCSPCPAGYKEVLRHEKGYT-----KQECVDVDECSLNRDECPDGAECINGVGSYEC-RCKEGYESDG-ETCVDINECLE---NPCSEHAKCINRSPGFQCTKCRFGYEGE 1173
S G+ CGPCP+GY G+GITC D+DECK + C CIN PG +C CP G+ + G + KQ C D+DEC C + C+N +GSY C CK GY D C C NPCS +A+CI G C G+ G+
Sbjct: 304 SRDGFQCGPCPEGYTGNGITCIDVDECKY-HPCYPGVHCINLSPGFRCDACPVGFTGPMVQGVGISFAKSNKQVCTDIDEC--RNGACVPNSICVNTLGSYRCGPCKPGYTGDQIRGCKAERNCRNPELNPCSVNAQCIEERQGDVTCVCGVGWAGD 457 The following BLAST results are available for this feature:
BLAST of TCONS_00020928 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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