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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020925 ID=TCONS_00020925|Name=TCONS_00020925|organism=Clytia hemisphaerica|type=transcript|length=1159bp
cctcaccaaaaaccggggtttttcatcccgtttcttagtaaccactttga
cgattttcgaaaaatagaagcctttcaagtgttttgacgcaaattcgatt
ttttttaaaatactgcaggagcttcaaacgtttaaagtgacgtcaaaaaa
tcgaatgtttagagcccgaaaagcccggttttcgggctcaaaacattcga
aaaagtcgcaaagtggaatagacgttacagCGTAGAAAAAagccgtgacg
tctagtatCGGCTACGTTATTGTCAGATGTTAGAAAAACGCCACTAAATC
AAGAGGCACCCCTCAGTAAGAGAATAATTTTTGCTGCTTTTGCTGTGATA
GACCTTTTCCTATTATataatgttgaataattaaaacaatttttaccTAA
TCGTTACGCATAAACAATATCACATTAAAACTTGGCGGCCATTTGATGGC
AGAAGTTTAAACCCGCTTGTATTGAAACTTGTTGAATTACAGTATACCTA
CTTTCAGAAATGGAAAAGACGGGCTCTATCAGTGTGTATAGAATTATAAG
GGATGTCAAAGAACacaaattgttttcattttatcttcTTCTTTCAGCTA
CTCTTCCAACTTCTGTATCATGTGTTGTATCAAGTTTTCTGTGCTTGATC
ACTTTTGCTGGtatgcaactcttcaaaacaccATTAGGATCTGGTAAAAT
GATGACCATCCTTGGTGGTTTTTTGGGATCACAATTATTTGTATTTGCAC
TGACtGCTATCAATAATTTCGAAGTGATGAATATGGGACGAAATTTCCAA
GCTAAACTTTTCCCTGAAgTCATTCTAGCTATGTTCATTGCTTTAATTGC
ATCTGGTATGGTTCACCGCGTCTGTGTCACTGTTTGTTTCATCTTCTCAT
GTATCGCCCTTTACTACTTAAACAATATGTCCACCTCAAGCCAACCCGCC
CCTGTTGCCCCCACCACAAAGAAAGGAAAGAAACATAATTAATTACCAGT
GTCCGTTTGATGGATTGTAATTAGTTATTTTGTCATTTATTTTGTAATAG
CTTTCTATTTCACTTAGTTGTTTTCTTTTGGTAATAAATGGGACATTTTc
ataaacaaaaagttttagaTTGTACGACTGTTTTCCATGAAATAACTTTA
GATAAGAAC Run BLAST on NCBI transcript from alignment at sc0000374:4958..8233+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020925 ID=TCONS_00020925|Name=TCONS_00020925|organism=Clytia hemisphaerica|type=transcript|length=3276bp|location=Sequence derived from alignment at sc0000374:4958..8233+ (Clytia hemisphaerica)
cctcaccaaaaaccggggtttttcatcccgtttcttagtaaccactttga
cgattttcgaaaaatagaagcctttcaagtgttttgacgcaaattcgatt
ttttttaaaatactgcaggagcttcaaacgtttaaagtgacgtcaaaaaa
tcgaatgtttagagcccgaaaagcccggttttcgggctcaaaacattcga
aaaagtcgcaaagtggaatagacgttacagCGTAGAAAAAagccgtgacg
tctagtatCGGCTACGTTATTGTCAGATGTTAGAAAAACGCCACTAAATC
AAGAGGCACCCCTCAGTAAGAGAATAATTTTTGCTGCTTTTGCTGTGATA
GACCTTTTCCTATTATataatgttgaataattaaaacaatttttaccTAA
TCGTTACGCATAAACAATATCACATTAAAACTTGGCGGCCATTTGATGGC
AGAAGTTTAAACCCGCTTGTATTGAAACTTGTTGAATTACAGTATACCTA
CTTTCAGAAATGGAAAAGACGGGCTCTATCAGTGTGTATAGAATTATAAG
GGATGTCAAAGAACacaaattgttttcattttatcttcTTCTTTCAGCTA
CTCTTCCAACTTCTGTATCATGTGTTGTATCAAGTTTTCTGTGCTTGATC
ACTTTTGCTGGtatgcaactcttcaaaacaccATTAGGATCTGGTAAAAT
GATGACCATCCTTGGTGGTTTTTTGGGATCACAATTATTTGTATTTGCAC
TGACtgtatcttttcaaaaaaatatcttaaatttGAGCTCAAATGTATAG
TTTGACCTACAGTAAGACCTTAAGTTATGTATCTTTAATGAGAGAAaact
atttttagattttagttcGACCTACATTTAACTAAAGAGCTCTGTtgttt
gaaaatcataaaacaAAATGTTTCACTAGGATAGAGTTCAGTAGAATCAA
AGGGAAATACTTCTACTTGACTctgagaccatgttcacacgttactggtT
CGTTTCGCTCCGCtgtgattttcgttacggatcgagattGTTCATATTAG
TTTCGAAACGTTTCGGAGCAACAAAACGGAGCAGTTCTGTTCCAATAAAA
AAGTGGAgtgaaaccgtttcgatctgttttgctgtgtaacgtcttctttt
ttgacgtttcgaattttgacgttcacacttgttttcggaaccgtttcgtt
tcggagcgaaacggaaccgtaaacgtctgaacatggtctgagATTTTCCG
AATAcacaataattatttttttgtaagtAATTAGATTATCGCTAGAGCTG
AGCCTCAGATTGTTCTtgaatttgttcttaggtttcgGCCAATCTCCaat
aaaagcgtgtattttgTGATTTAGATATTCTTTGAAGTTATTTATTTCTT
GTTATTACTACTCTAAATATTAAGATAACTTTTTCTTAACGAAATTACAA
TGATAATTAACAACAGGCTATCAATAATTTCGAAGTGATGAATATGGGAC
GAAATTTCCAAGCTAAACTTTTCCCTGAAggtaagataattttttttatt
caagctATAATAGCCCTGAAAGTCTGCAGGGTCGGCACCAGTGAAACTGC
ATGTCTACTACACCTTTAAGAGCTTGTAACAGGATTTcataatcaaaatt
taaaaagtccgAGTGGGAGTGTAATACTCGATATaaacaaaatgacgtca
tatgtTTTGTACAAAACATGTAGATCAAAGTGACGTCAGAAGAATTCGGA
TTCAACGGTATAGaccaatattttatttatttatcaaacCAAATTTACTC
TAATTTATTGCCCCTATTGTAAGTATATCTGAAATATAATATTcacggaa
aaaaaaaaaatagaccaatgaagtataagcttgaagggctagaatcgaat
ctgcATGGTAGAATTAGAAGCCAACAAgtcctaccaaagttgcacgGCCT
AGCGTGGCCCGCCTGCATTTTACACAAATGGCAGATTGAAACTTAAGACT
TACTGttaaatttcgaaaataatATCACTCGAAAAGAAAAGAATTGCTAG
ATTGAAttcgtcgtcaaaaatacggcacatattttaaggcttcatttttt
cttgcctgagaaaggttagagattcgatCCTAGCCCTTTGGGCTCATACT
TCATTGGTAATAGACCGGGTATAGCGTCAAACTTTCTGCAATGCAATAAG
ATTAGTATTAATTTTTGTCTTTGATTCTCTCTTTAGTCATTCTAGCTATG
TTCATTGCTTTAATTGCATCTGGTATGGTTCACCGCGTCTGTGTCACTGT
TTGGTGGgtttcaacttttttctttcatttttggaatttgccAAAGCATA
TCTTGGGGTAGCTTTCTAAACGTTTAAAAACCATACTTTGATATTATGAC
ATCTTGTTGTCATTATAAACCGTCCCTGGAGGTTTAAACCCAGCGAATTT
TCCTCCGTTGTCGGGCTACGAAGAACAAAATAATCAAACCAGGATCTGtt
taataattaattaattaataataAGTTGCGAACTgttaaaacacaaagaa
ttaaccTCGGAATGGGCTTTTTCTGTTAACAAGGAACTagaatatcaaat
ttttgtcaTGATTCTCATGGCTCATTTACAAAAATTAGGattaagtttca
aaattcaagcaaAGATTGAGTTTCTGCCACTGTTATCCGATTGCAGAAAA
GGCCTGGAAATTTCTCTGGACCCAAGCTTTACTAGTTATATTTTTCGAGT
AAATTtcctttaaatcaagttattaaAGTCTGAAAATAAGCTAAGGTGTT
AAAATTTCACGtcctaaaattagaaaaaaatctctaaaaggTTGACACTC
AATCAacggaaaaaaaaactttttgcacgGAATAGCGAAAAACCTTTTCG
CCTCCAATTAGGGGATAACCCTGATGGTTTCCGCCAATTAAAGATTCCAC
TATATTCTGTTTTAGTTTACGtctttttcaaatattctttCTTCTATTTT
CAGTTTCATCTTCTCATGTATCGCCCTTTACTACTTAAACAATATGTCCA
CCTCAAGCCAACCCGCCCCTGTTGCCCCCACCACAAAGAAAGGAAAGAAA
CATAATTAATTACCAGTGTCCGTTTGATGGATTGTAATTAGTTATTTTGT
CATTTATTTTGTAATAGCTTTCTATTTCACTTAGTTGTTTTCTTTTGGTA
ATAAATGGGACATTTTcataaacaaaaagttttagaTTGTACGACTGTTT
TCCATGAAATAACTTTAGATAAGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020925-exon-sc0000374-1491911889:4958..5712 | TCONS_00020925-exon-sc0000374-1491911889:4958..5712 | Clytia hemisphaerica | exon |
| TCONS_00020925-exon-sc0000374-1510915933:4958..5712 | TCONS_00020925-exon-sc0000374-1510915933:4958..5712 | Clytia hemisphaerica | exon |
| TCONS_00020925-exon-sc0000374-1575043694:4958..5712 | TCONS_00020925-exon-sc0000374-1575043694:4958..5712 | Clytia hemisphaerica | exon |
| TCONS_00020925-exon-sc0000374-1491911889:6424..6487 | TCONS_00020925-exon-sc0000374-1491911889:6424..6487 | Clytia hemisphaerica | exon |
| TCONS_00020925-exon-sc0000374-1510915933:6424..6487 | TCONS_00020925-exon-sc0000374-1510915933:6424..6487 | Clytia hemisphaerica | exon |
| TCONS_00020925-exon-sc0000374-1575043694:6424..6487 | TCONS_00020925-exon-sc0000374-1575043694:6424..6487 | Clytia hemisphaerica | exon |
| TCONS_00020925-exon-sc0000374-1491911889:7194..7260 | TCONS_00020925-exon-sc0000374-1491911889:7194..7260 | Clytia hemisphaerica | exon |
| TCONS_00020925-exon-sc0000374-1510915933:7194..7260 | TCONS_00020925-exon-sc0000374-1510915933:7194..7260 | Clytia hemisphaerica | exon |
| TCONS_00020925-exon-sc0000374-1575043694:7194..7260 | TCONS_00020925-exon-sc0000374-1575043694:7194..7260 | Clytia hemisphaerica | exon |
| TCONS_00020925-exon-sc0000374-1491911889:7961..8233 | TCONS_00020925-exon-sc0000374-1491911889:7961..8233 | Clytia hemisphaerica | exon |
| TCONS_00020925-exon-sc0000374-1510915933:7961..8233 | TCONS_00020925-exon-sc0000374-1510915933:7961..8233 | Clytia hemisphaerica | exon |
| TCONS_00020925-exon-sc0000374-1575043694:7961..8233 | TCONS_00020925-exon-sc0000374-1575043694:7961..8233 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000374 | supercontig | sc0000374:4958..8233 + |
Blast
BLAST of TCONS_00020925 vs. Swiss-Prot (Human)
Match: KTAP2 (Keratinocyte-associated protein 2 OS=Homo sapiens GN=KRTCAP2 PE=1 SV=2) HSP 1 Score: 117.857 bits (294), Expect = 2.148e-31 Identity = 63/117 (53.85%), Postives = 82/117 (70.09%), Query Frame = 3
Query: 654 FAGMQLFKTPLGSGKMMTILGGFLGSQLFVFALTAINNFEVMNMGRNFQAKLFPEVILAMFIALIASGMVHRVCVTVCFIFSCIALYYLNNMSTS--SQPAPV---APTTKKGKKHN 989
FAGMQ++ L S + +TI GG LGS LFVF+LTA NN E + G+ FQAK+FPE++L + +AL ASG++HRVCVT CFIFS + LYY+N +S++ APV A T K KK N
Sbjct: 20 FAGMQMYSRQLASTEWLTIQGGLLGSGLFVFSLTAFNNLENLVFGKGFQAKIFPEILLCLLLALFASGLIHRVCVTTCFIFSMVGLYYINKISSTLYQAAAPVLTPAKVTGKSKKRN 136
The following BLAST results are available for this feature:
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