TCONS_00020887 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020887
Unique NameTCONS_00020887
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length190

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020887 ID=TCONS_00020887|Name=TCONS_00020887|organism=Clytia hemisphaerica|type=transcript|length=190bp
CACCAGAATGCAACGACTCTTTGTGCAAATGGGTTCCAAATGGTTCTTTA
TTCCGATTGGACAACAACAAACCACAATACTATGTTCAATGCAGCAATGG
AATCGCTTCTTGCCGTCAATGTCCACCTCAcatgtatttcaacaacaaat
ttGATGTCTGTGTTCGACGCACTGTACCAAAAGACTGGTA
Run BLAST on NCBI

transcript from alignment at sc0000373:140550..140929+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020887 ID=TCONS_00020887|Name=TCONS_00020887|organism=Clytia hemisphaerica|type=transcript|length=380bp|location=Sequence derived from alignment at sc0000373:140550..140929+ (Clytia hemisphaerica)
CACCAGAATGTAAGTATTGTTTCAAGTTgaacaaaaatcattttcttctt
cagcaTAATTATCTTTAATAAAGGCTGTCATTGCTAGTTTCTGGCTGTTG
TTAAAGTTTTAAGAATACTTAAAATACTAAAGGAGCAGCCGTTAACTTAA
TCGTGAAAATGTCTTTTGAAAGCTCTAATCTTTATTTTTCTCACTTTAGG
CAACGACTCTTTGTGCAAATGGGTTCCAAATGGTTCTTTATTCCGATTGG
ACAACAACAAACCACAATACTATGTTCAATGCAGCAATGGAATCGCTTCT
TGCCGTCAATGTCCACCTCAcatgtatttcaacaacaaatttGATGTCTG
TGTTCGACGCACTGTACCAAAAGACTGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011713XLOC_011713Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020887-exon-sc0000373-1491911889:140550..140558TCONS_00020887-exon-sc0000373-1491911889:140550..140558Clytia hemisphaericaexon
TCONS_00020887-exon-sc0000373-1510915933:140550..140558TCONS_00020887-exon-sc0000373-1510915933:140550..140558Clytia hemisphaericaexon
TCONS_00020887-exon-sc0000373-1575043694:140550..140558TCONS_00020887-exon-sc0000373-1575043694:140550..140558Clytia hemisphaericaexon
TCONS_00020887-exon-sc0000373-1491911889:140749..140929TCONS_00020887-exon-sc0000373-1491911889:140749..140929Clytia hemisphaericaexon
TCONS_00020887-exon-sc0000373-1510915933:140749..140929TCONS_00020887-exon-sc0000373-1510915933:140749..140929Clytia hemisphaericaexon
TCONS_00020887-exon-sc0000373-1575043694:140749..140929TCONS_00020887-exon-sc0000373-1575043694:140749..140929Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000373supercontigsc0000373:140550..140929 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020887 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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