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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020875 ID=TCONS_00020875|Name=TCONS_00020875|organism=Clytia hemisphaerica|type=transcript|length=777bp
CACAAAGTAGGGTTTGATTTTGGTTCAAGTTGATTAAGCTTTTCTTTTAG
GAATAAGAGGATCATCAAAAATACATACCCCTTTTTTATGGAAGTTACGT
TATCAAATTGTCTTCAGAGAGACTGTTCTTACAGCTTAGATCTTGCGGGA
CAAAACTGCGGATCTTTCCAAATCGCTTCCGGCCCCTTCCATCTTCAAAA
ATGTAAGTCCACGTAAACGACGTAAACGTCCATCGTAAACGATGCTAGTG
TTGTAAATGAATGACATGAAtgattatatttttcatttctatcTGGCGGG
GTGATGACGTAATCAAAATCCTTATCGATCATCGGACGTGTCAAACAGCT
TAGCGTATTAGTTCtctgtttttttaattctcaTTGAAGTAGTGGTAATA
ATCTTGATGTCAGATTTAATCGAATTTAATTTACCACGCTGTTTTGAAAA
TCATCAGAAAAGTGAGAGATGACTGATCAGCTGGAAACTCATCCGTAAAC
TACTTGATAACGATCTGATGATATCTTCAAAAACAGGACACTCTAGCATG
AGAGTAGCAGTTACACGGTGTTGCCATCAAAGGCTACATCACCGACACCA
TTAGAATTTGCTGGCAGATACAAGATAGTTGTTGTTGGTGAAGATAATTG
TGGAAAAACATGTCTTTTGAATTCCTTCTCCAGGAGAACTTTCACGATGG
ACACAGCAGTGACTTATGATGATGGTGTATCAACAATCCGTTATGGTTCT
AAACAAGTCGAATTCGTCATGTGGGAC Run BLAST on NCBI transcript from alignment at sc0000373:85389..90275+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020875 ID=TCONS_00020875|Name=TCONS_00020875|organism=Clytia hemisphaerica|type=transcript|length=4887bp|location=Sequence derived from alignment at sc0000373:85389..90275+ (Clytia hemisphaerica)
CACAAAGTAGGGTTTGATTTTGGTTCAAGTTGATTAAGCTTTTCTTTTAG
GAATAAGAGGATCATCAAAAATACATACCCCTTTTTTATGGAAGTTACGT
TATCAAATTGTCTTCAGAGAGACTGTTCTTACAGCTTAGATCTTGCGGGA
CAAAACTGCGGATCTTTCCAAATCGCTTCCGGCCCCTTCCATCTTCAAAA
ATGTAAGTCCACGTAAACGACGTAAACGTCCATCGTAAACGATGCTAGTG
TTGTAAATGAATGACATGAAtgattatatttttcatttctatcTGGCGGG
GTGATGACGTAATCAAAATCCTTATCGATCATCGGACGTGTCAAACAGCT
TAGCGTATTAGTTCtctgtttttttaattctcaTTGAAGTAGTGGTAATA
ATCTTGATGTCAGATTTAATCGAATTTAATTTACCACGCTGTTTTGAAAA
TCATCAGAAAAGTGAGAGATGACTGATCAGCTGGAAACTCATCCGTAAAC
TACTTGATAACGATCTGATGATATCTTCAAAAACAGGACACTCTAGCATG
AGGTAAAGTATCCGCCATGAAGTGTTACAGTTTCAAGTTTAACTCTTTGA
CGACTAGTCATTTGTTCTCCGTCNTGAGCATTGTAGTTTCGAATTTAACT
CTTTGACGACTAGTCATTTGTTCTCCGTCGTGGTTACTCGGAATGTTTGG
ACTGGAGTATGACAGTGACCTTTTAACTTAGTGTTGAAAAGTTAATTTTT
GAGGAATGAAGAGTGCTGAATATTTAAAATTGTGGTTGAAGTCGTGGTGC
TAAGATGGTTGGAATATTGCTGAATAAGAGCCGTGGCATAGTTGATAAAA
TATAACTTATGAAGTGCCTTGGCAATGGCTATAGATCATTAGAGCCAAGG
GGAAACAGTTTTATTGTAGTTTTTAGGCTCTTGGTAACTTAGGTTTGAAA
AGGTATGTTAGGTTGACGATCTCTGAAAGTCTAAAAATTTATTGCAAGTC
AGCTAATTAATGAGACGATGACTCTGTGGAAATGAGTGAATTTGCTTCAT
ATATCTGAAGTGAAATCATAAACTTTACATTGCATAAGCCATTtcaaaaa
acacttaaaaaataTGTCATCATTTTATTCATTACCCTTGTTGTTTGGTT
AGGATAAATTTTACCAGTGAGTGACGATGGATATCGGATGGTTGAATTTG
CTTTTAGGTAATAATCGGCTTAATTTCATGTTGTTTGGCTTATAAAGTTC
AATGGTTGACGTTGAGCGATGAATCTCACTAGTAGAATGTTACAATATTT
AAAAGTCTACGGATTTTCGGTAAACGNAAATATCACTAGTAGAATGTTAC
AATCGTTTATGTTAAAAGTCTACGGATTGTAGGTAAACTTCCTCACAGAT
ACCATACGGCATTTAAAGGCAGGAAATGATAAGTTTTTTTGATGGGCATA
TAAAAGAGAAAAGTTTTCTGTGCCCGCTGGCAGTGTTGTTTTTAGATTTG
GTGTATAGTTTGTCGTCACACTTTGCATTTTTCTTTAAGGTTGCTAACAT
GTCCTggaattcttttgtttctttgtctTTAGGGGTATGTTACTTAGAGC
AGTAAATTTTCAAGTTACTGTTGCCAAATTCGCTGCAATTTGGTTGAATT
TACAGAACTGGCTGCTTTCAAACCAATCAGCCTATGATTTACGACTTTTT
TCGATTCGTTAAATGAAAAAGGCCCGGGACGTTGGGGTTAACAGGAAAGA
TAGTAGTTTCTTGTAATTTCTGTTTCTATGAAGATGTGATATTTTTTTGC
AGAGAATATTTCACATTCGACTTCCCCTACTGTATTGATATAGCGCATTG
ATAAACGGAAAGTATTTGCTTTACATTATCATCAGAAAATGAAGTAATTG
AAGGTTAGAGTTAAGGAAATGTCGTATGAATATTTATGTTAATTATGCCA
CAAACAGTCCATTAAATAGGCCAGTCACATGTATGCTTCTCAAACCATTT
TTCTGCTGATGCAGTCAATACGTTACGGATGTTAATACAGAATTTTTTAA
CTAGCTTCATTATAGAGAGATGGTAAGATATTTAAAGACAGCGGGTCAAC
ATCTAATAATTACCGTTGACGCTTATGCTGGCTGGCTGGTTGGTTGGCAA
TTCATTTGACTTTATATCGTCACTTTGAATACAATGAGTTCGGTTGAGCC
TTtatgtttttcttgtttttaaagATGCCATTTTCTTATTGAAACGAGTT
GCTGAAAATAAACATGATAGCTTGGTGTTATAGTCTTGACACGTTCTTAT
CTGTTTATTTTAATACCTTTTTCAGAGATATGAGATAGAACCGAGGAGGT
ATAAATGCATAGTTTCACAAATCTTTTTATTTGCTTGAGTTTGGTATTTA
GTTTGGACTGTAGCTTACTCTCCTTATTCTTAGATATCACTACGGGGAGT
GGGAAGCTAATTTCGCTTGTACGCCCGTTACGGGTGAAGCAGGGTTTGTC
AGGTATCATCGGTTAGTCAAATGCagttatttgaaaatttaatacATTGG
CTTTAAAATAGATCAATAAGAATTAAATATTAATCGGAATATTAACTTTC
TTGGAAAATGATGATAGCTCAAAGACCGCGTTCAGTGACTATTGATTCTC
TCTTGCCGACACTGGAATCTCCTTCTTTGACGTCCAAAAGGAAACCGAGG
GTGAGTAGGATTCCATTAGATTTATACGTACGAATGATACTTAATTTCCA
GATTGTAATATAGGAAACTAAACATAATAGATAAGAGAGATCCTGATGTC
GACATTAGGAAACTTATGTTTCCAACATATCCAGGAGCGTTATGGTGAGA
AAAAAGCAAACGTGAACAACAGACATCGAAATTTacataaacattttttg
agAAAGGTTGACTTTGGCTGAGCTTGCGTCTTATCTTTGTCTACTTCTTT
AGTATATGATTGTATCATGTAAACTTTAAACCCGAGGAGGATACGAGTAT
CTTCCTGAGTCATGTTCTTCCTGAAATTTAGAATGAATTTCTCCCTAAGC
AGGACGCACAAACCTTTTTATCAAAAGGCGCTAAAGCAGTTTTTTCCATG
AAATTGCCTTAAATCGAAACATTCTTAACTCGTTAGTATGGGAAAATATT
GATGTTGCTTCAAAGTGGGCAGATGTAAGCAAAAGTATTTCTCAAGTGTA
ATCTTTTCAATCATCTACCTCACTTAAAACTCGTTTAGTTAAACGAGGCT
CAATTAACAAGATATTGAAATTTGACGACTAACGAATGGAATGCGCTGGA
AAACAAAAACCTAGACACCTTAGGATTTGTGCCTTCAAAGAAGAGTCTTC
ATTATTGTTTGGTTCTATAAACAGGTCATTATTGCTAGTCATCGCTAGCA
TATTTTATCCGAAGTTAATGAGATAATGATCGTCTAATGGTTATCCGTAT
TACGAGTTTAAAGATAATCTGGGATCTTTTGGCAATTATGAACTTTAAAG
TTTGCTAACATGAACGTAAACAAtttatcttttaaaaatttcgctAATTT
TAGATCCGTAAATTTTAATCAGGTCTTATTTCGGTCTTCAAGGCAATCTG
AATTTTCTTCTTGCTCTGCCCACAAACAGTTGTATGTGAGACGTTCAAGT
TTAGCTGATTCAGGTTTAAAGCGCccataaaagaaaatttaaacacaGAT
TACTCTATGACGTCTAGCGAGTACCCCACAAAAGCCGGGATTCTTCATTC
CATTACTGCATAGAGAAAAACCTGTGACGTATAGGCTTTGCTACATCCAA
AAGTGACTCAAAAATGCTAATGCTAATTTCCCGCAATATTAAGCATAGAT
TGTTATACCTATAAAACGAAAAGCATTTTTTACCTGTTCTAAGTCCCTTC
TAAACAGTACGCTTTTAAGAATagactttttcttaaaaaaacaatactAC
ATTTCTagtaaaatcttctttttttttcctttatagAGTAGCAGTTACAC
GGTGTTGCCATCAAAGGCTACATCACCGACACCATTAGAATTTGCTGGCA
GATACAAGATAGTTGTTGTTGGTGAAGATAATTGTGGAAAAACATGTCTT
TTGAATTCCTTCTCCAGGAGAACTTTCACGGTACATATTATATTAAAATA
TTCCAATTCGCCAGAttcctttttcaagtttttgtatgAAGTTTTGTACG
GATTCTAAAGAGGCATAATGATAAAGGCAGGAGTTTCAATTATcttataa
agttttttattcaagaTTGTAACGACACCGAGAAAAATCTGTTGCTACTT
GGCATGAGTAATCGTTCAAAATAACAAAgcagtttttcctttttcacaTA
CTGTATCCTTATTGCAAAATGATTTCTTGCAGAAGTATATTGAGCAATTG
TTACAGCCCATTCGgaaattcgaacattttgaaatattacaaaaaatttT
CCTCACTCTTTTGATTGTGCGAGTTTCGATACATCCTTCaaggaaatcga
aaatttctgCGCCTTTGGTTAATTACTTGTGGTTCAGGATGCTTAGCTCT
CCTTTTCATGATTGCTTCGTTTTCCCTTTGCACGTGTTTTTATTTCCTGT
GATTTgaagaacatttaaaaaataaaattccttaGATAATATGTGCATAA
AATCTGCATATACTTTGATAATTTCAAATACTAATGAACATTGGTGGGTG
AAAAATCTGAGGGTAAAACCCACAAAACCTTAATGATTTCAACAACATAC
ACTTGACATCCTCCAATCCTTGCACTGTATCAAATATCTTTTGTATGTTA
AACCAGATGGACACAGCAGTGACTTATGATGATGGTGTATCAACAATCCG
TTATGGTTCTAAACAAGTCGAATTCGTCATGTGGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020875-exon-sc0000373-1491911889:85389..85940 | TCONS_00020875-exon-sc0000373-1491911889:85389..85940 | Clytia hemisphaerica | exon |
| TCONS_00020875-exon-sc0000373-1510915933:85389..85940 | TCONS_00020875-exon-sc0000373-1510915933:85389..85940 | Clytia hemisphaerica | exon |
| TCONS_00020875-exon-sc0000373-1575043694:85389..85940 | TCONS_00020875-exon-sc0000373-1575043694:85389..85940 | Clytia hemisphaerica | exon |
| TCONS_00020875-exon-sc0000373-1491911889:89375..89518 | TCONS_00020875-exon-sc0000373-1491911889:89375..89518 | Clytia hemisphaerica | exon |
| TCONS_00020875-exon-sc0000373-1510915933:89375..89518 | TCONS_00020875-exon-sc0000373-1510915933:89375..89518 | Clytia hemisphaerica | exon |
| TCONS_00020875-exon-sc0000373-1575043694:89375..89518 | TCONS_00020875-exon-sc0000373-1575043694:89375..89518 | Clytia hemisphaerica | exon |
| TCONS_00020875-exon-sc0000373-1491911889:90195..90275 | TCONS_00020875-exon-sc0000373-1491911889:90195..90275 | Clytia hemisphaerica | exon |
| TCONS_00020875-exon-sc0000373-1510915933:90195..90275 | TCONS_00020875-exon-sc0000373-1510915933:90195..90275 | Clytia hemisphaerica | exon |
| TCONS_00020875-exon-sc0000373-1575043694:90195..90275 | TCONS_00020875-exon-sc0000373-1575043694:90195..90275 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000373 | supercontig | sc0000373:85389..90275 + |
Blast
The following BLAST results are available for this feature:
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