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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020855 ID=TCONS_00020855|Name=TCONS_00020855|organism=Clytia hemisphaerica|type=transcript|length=3977bpRun BLAST on NCBI protein sequence of TCONS_00020855-protein >TCONS_00020855-protein ID=TCONS_00020855-protein|Name=TCONS_00020855-protein|organism=Clytia hemisphaerica|type=polypeptide|length=723bp RCEYNSDKFNVNKGVNLSEVLKRLSDLRLPANSSTTIPDTWNHISILSKSRun BLAST on NCBI transcript from alignment at sc0000371:268130..292628- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020855 ID=TCONS_00020855|Name=TCONS_00020855|organism=Clytia hemisphaerica|type=transcript|length=24499bp|location=Sequence derived from alignment at sc0000371:268130..292628- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000371:268130..292628- >TCONS_00020855 ID=TCONS_00020855|Name=TCONS_00020855|organism=Clytia hemisphaerica|type=CDS|length=47784bp|location=Sequence derived from alignment at sc0000371:268130..292628- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020855 vs. Swiss-Prot (Human)
Match: PDXD1 (Pyridoxal-dependent decarboxylase domain-containing protein 1 OS=Homo sapiens GN=PDXDC1 PE=1 SV=2) HSP 1 Score: 346.665 bits (888), Expect = 2.325e-102 Identity = 193/586 (32.94%), Postives = 323/586 (55.12%), Query Frame = 2
Query: 197 IADRIYSDCQTWLSELFSLDNLQSSFHNKELDGVVKVCKLALHSKYPKYASDGFTALYTRPPVIYISSAAPPEFSKQLQNQLGLPQSSVCSVPCNTMFGSPFTMDVSALERLLTDDVSCGKTPLILIAYAGTPLTGHTDNLSRLREICTQSGVWFHVEGDTLANLALSQTQPSIQIASSADSLTLNLSRWFGISSLPHCTYYRCNNTTQAELSGLIADS-TEKLSALCVWVIVQFMGTHDLQNMIEHSSVLAQQMISRLDVINGVKRIEQPSGLSPVVIYKYKASPSLPLTLDDTEEKGKILAAAPRGKIEVSERLTNSFNQKLCDSLNKENPALRVEAVEIPREGLCMKFDPLLTSRAKGTSKVDVDNYIESLQQKIIMMDNLLVSRDLFTEMFSKISDVIVLDTKELPIMGAFQCIPKYWKTKTMSNLSDLKKQEANELNLRIYQALCTQFEDV------LVLAQQDTGLNTVQLGMVGESFNLQLFSELVAKLTVEFEDNAKFVESVTDSIQKSIEEAQDKLNKEREEKFFQDGVLRSVPVVASFYNWFSPPPKEDHGVTGRSFDLSSGKLDSTEQTYKFKMQ 1933
+ RI SD WL +F +N + FH +E +G+ K+C+LA+HS+Y + DGF LY + PVIY+S+AA P + L NQLGLP +C VPCNT+FGS MDV+ LE+L+ DD+ G+ PL+L+A AGT GHTD + RL+E+C Q G+W HVEG LA LAL S+ A+ DS+T+ W G+ ++P T Y+ ++ ++GL ++ T+KL AL +W+ +Q++G I+H+ L+Q++ L +N +K + + SPVV++++ LP + D + + P G + ++ N+ L + L + PA + +++ EG C++F PL+T+ GT DVD + ++ K+ ++ L R+ F + + ++ +D +G + +Y + S LK E I+ L + ++ + + + + + +GM ++ + E +A E E+N++ +E++T+ ++K I+EAQ +L K EE+ ++GVLR +PVV S NWFSP GR+F+L++G L+STE Y +K Q
Sbjct: 113 LTTRILSDTTLWLCRIFRYENGCAYFHEEEREGLAKICRLAIHSRYEDFVVDGFNVLYNKKPVIYLSAAARPGLGQYLCNQLGLPFPCLCRVPCNTVFGSQHQMDVAFLEKLIKDDIERGRLPLLLVANAGTAAVGHTDKIGRLKELCEQYGIWLHVEGVNLATLALGYVSSSVLAAAKCDSMTMTPGPWLGLPAVPAVTLYKHDDPALTLVAGLTSNKPTDKLRALPLWLSLQYLGLDGFVERIKHACQLSQRLQESLKKVNYIKILVEDELSSPVVVFRFFQ--ELPGS-DPVFKAVPVPNMTPSG-VGRERHSCDALNRWLGEQLKQLVPASGLTVMDLEAEGTCLRFSPLMTAAVLGTRGEDVDQLVACIESKLPVLCCTLQLREEFKQEVEATAGLLYVDDPNWSGIG----VVRYEHAN--DDKSSLKSDPEGE---NIHAGLLKKLNELESDLTFKIGPEYKSMKSCLYVGMASDNVDAAELVETIAATAREIEENSRLLENMTEVVRKGIQEAQVELQKASEERLLEEGVLRQIPVVGSVLNWFSPVQALQ---KGRTFNLTAGSLESTEPIYVYKAQ 682 The following BLAST results are available for this feature:
BLAST of TCONS_00020855 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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