TCONS_00020855-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00020855-protein
Unique Name	TCONS_00020855-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	723

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00020855-protein ID=TCONS_00020855-protein|Name=TCONS_00020855-protein|organism=Clytia hemisphaerica|type=polypeptide|length=723bp
RCEYNSDKFNVNKGVNLSEVLKRLSDLRLPANSSTTIPDTWNHISILSKS
LQEYLLLLESHQRNSIADRIYSDCQTWLSELFSLDNLQSSFHNKELDGVV
KVCKLALHSKYPKYASDGFTALYTRPPVIYISSAAPPEFSKQLQNQLGLP
QSSVCSVPCNTMFGSPFTMDVSALERLLTDDVSCGKTPLILIAYAGTPLT
GHTDNLSRLREICTQSGVWFHVEGDTLANLALSQTQPSIQIASSADSLTL
NLSRWFGISSLPHCTYYRCNNTTQAELSGLIADSTEKLSALCVWVIVQFM
GTHDLQNMIEHSSVLAQQMISRLDVINGVKRIEQPSGLSPVVIYKYKASP
SLPLTLDDTEEKGKILAAAPRGKIEVSERLTNSFNQKLCDSLNKENPALR
VEAVEIPREGLCMKFDPLLTSRAKGTSKVDVDNYIESLQQKIIMMDNLLV
SRDLFTEMFSKISDVIVLDTKELPIMGAFQCIPKYWKTKTMSNLSDLKKQ
EANELNLRIYQALCTQFEDVLVLAQQDTGLNTVQLGMVGESFNLQLFSEL
VAKLTVEFEDNAKFVESVTDSIQKSIEEAQDKLNKEREEKFFQDGVLRSV
PVVASFYNWFSPPPKEDHGVTGRSFDLSSGKLDSTEQTYKFKMQVHDDQS
DLLSNASDISKASALETSSVKDPDETSTSAEMNDVTVNDDVETGEPIQTE
TSQEQPVEKAEEAGQEDVRESDV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_011694	XLOC_011694	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00020855	TCONS_00020855	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR015421	PyrdxlP-dep_Trfase_major_sub1
IPR002129	PyrdxlP-dep_de-COase
IPR015422	PyrdxlP-dep_Trfase_sub2
IPR015424	PyrdxlP-dep_Trfase

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity
GO:0016831	carboxy-lyase activity
GO:0030170	pyridoxal phosphate binding

Vocabulary: **Biological Process**
Term	Definition
GO:0019752	carboxylic acid metabolic process

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019752	carboxylic acid metabolic process
molecular_function	GO:0016831	carboxy-lyase activity
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0030170	pyridoxal phosphate binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 569..589
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 664..723
IPR015421	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	GENE3D	3.40.640.10		coord: 60..275 e-value: 1.7E-12 score: 46.4
IPR002129	Pyridoxal phosphate-dependent decarboxylase	PFAM	PF00282	Pyridoxal_deC	coord: 165..322 e-value: 1.7E-8 score: 33.5
IPR015422	Pyridoxal phosphate-dependent transferase, subdomain 2	GENE3D	3.90.1150.10		coord: 285..442 e-value: 1.8E-6 score: 27.6 coord: 443..559 e-value: 0.53 score: 10.0
IPR015424	Pyridoxal phosphate-dependent transferase	SUPERFAMILY	53383	PLP-dependent transferases	coord: 13..349

Blast

[Close]

BLAST of TCONS_00020855-protein vs. Swiss-Prot (Human)
Match: PDXD1 (Pyridoxal-dependent decarboxylase domain-containing protein 1 OS=Homo sapiens GN=PDXDC1 PE=1 SV=2)

HSP 1 Score: 358.992 bits (920), Expect = 7.107e-113
Identity = 199/610 (32.62%), Postives = 335/610 (54.92%), Query Frame = 0

Query:   42 NHISILSKSLQEYLLLLESHQRNSIADRIYSDCQTWLSELFSLDNLQSSFHNKELDGVVKVCKLALHSKYPKYASDGFTALYTRPPVIYISSAAPPEFSKQLQNQLGLPQSSVCSVPCNTMFGSPFTMDVSALERLLTDDVSCGKTPLILIAYAGTPLTGHTDNLSRLREICTQSGVWFHVEGDTLANLALSQTQPSIQIASSADSLTLNLSRWFGISSLPHCTYYRCNNTTQAELSGLIADS-TEKLSALCVWVIVQFMGTHDLQNMIEHSSVLAQQMISRLDVINGVKRIEQPSGLSPVVIYKYKASPSLPLTLDDTEEKGKILAAAPRGKIEVSERLTNSFNQKLCDSLNKENPALRVEAVEIPREGLCMKFDPLLTSRAKGTSKVDVDNYIESLQQKIIMMDNLLVSRDLFTEMFSKISDVIVLDTKELPIMGAFQCIPKYWKTKTMSNLSDLKKQEANELNLRIYQALCTQFEDV------LVLAQQDTGLNTVQLGMVGESFNLQLFSELVAKLTVEFEDNAKFVESVTDSIQKSIEEAQDKLNKEREEKFFQDGVLRSVPVVASFYNWFSPPPKEDHGVTGRSFDLSSGKLDSTEQTYKFKMQ 644
             H+++L  SL  Y+  L+  +   +  RI SD   WL  +F  +N  + FH +E +G+ K+C+LA+HS+Y  +  DGF  LY + PVIY+S+AA P   + L NQLGLP   +C VPCNT+FGS   MDV+ LE+L+ DD+  G+ PL+L+A AGT   GHTD + RL+E+C Q G+W HVEG  LA LAL     S+  A+  DS+T+    W G+ ++P  T Y+ ++     ++GL ++  T+KL AL +W+ +Q++G       I+H+  L+Q++   L  +N +K + +    SPVV++++     LP + D   +   +    P G +       ++ N+ L + L +  PA  +  +++  EG C++F PL+T+   GT   DVD  +  ++ K+ ++   L  R+ F +     + ++ +D      +G    + +Y       + S LK     E    I+  L  +  ++       +  +  +  + + +GM  ++ +     E +A    E E+N++ +E++T+ ++K I+EAQ +L K  EE+  ++GVLR +PVV S  NWFSP         GR+F+L++G L+STE  Y +K Q
Sbjct:   89 GHMALLGHSLGAYISTLDKEKLRKLTTRILSDTTLWLCRIFRYENGCAYFHEEEREGLAKICRLAIHSRYEDFVVDGFNVLYNKKPVIYLSAAARPGLGQYLCNQLGLPFPCLCRVPCNTVFGSQHQMDVAFLEKLIKDDIERGRLPLLLVANAGTAAVGHTDKIGRLKELCEQYGIWLHVEGVNLATLALGYVSSSVLAAAKCDSMTMTPGPWLGLPAVPAVTLYKHDDPALTLVAGLTSNKPTDKLRALPLWLSLQYLGLDGFVERIKHACQLSQRLQESLKKVNYIKILVEDELSSPVVVFRFFQ--ELPGS-DPVFKAVPVPNMTPSG-VGRERHSCDALNRWLGEQLKQLVPASGLTVMDLEAEGTCLRFSPLMTAAVLGTRGEDVDQLVACIESKLPVLCCTLQLREEFKQEVEATAGLLYVDDPNWSGIG----VVRYEHAN--DDKSSLKSDPEGE---NIHAGLLKKLNELESDLTFKIGPEYKSMKSCLYVGMASDNVDAAELVETIAATAREIEENSRLLENMTEVVRKGIQEAQVELQKASEERLLEEGVLRQIPVVGSVLNWFSPVQALQ---KGRTFNLTAGSLESTEPIYVYKAQ 682

The following BLAST results are available for this feature:

BLAST of TCONS_00020855-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00020855-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PDXD1	7.107e-113	32.62	Pyridoxal-dependent decarboxylase domain-containin...	[more]

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TCONS_00020855-protein (polypeptide) - C. hemisphaerica