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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020846 ID=TCONS_00020846|Name=TCONS_00020846|organism=Clytia hemisphaerica|type=transcript|length=2071bp
ttgaaactcaaaCATAACAGAATTGACAAAGTAACAGACACATCTTCGTC
TCAAAAAATTTGTAAAgctaaacttaaaaaaaatcttgcacattttttta
caaattgtGTTTAAGCCTTTTTGAGCTGTTGGAACAAAAAGAAGCTTTTT
ATCAAAAGGACGACACTTTCTTTAGATAACGACATCTAACACAAATTCAT
ATACAAAATGGCTGAAGATGATGTTGCCGCTCTCGTCGTAGACAATGGAT
CTGGTATGTGCAAAGCTGGATTTGCTGGAGATGATGCTCCAAGAGCTGTC
TTCCCCTCCATTGTTGGACGTCCCCGTCATCAAGGTGTCATGGTTGGTAT
GGGACAAAAAGACTCGTATGTCGGTGATGAAGCTCAATCCAAGAGAGGTA
TCCTCACCTTGAAATACCCCATCGAACACGGAATCGTCACCAACTGGGAT
GATATGGAAAAAGTGAGTTTTGTTTGTTTGCAAGAAACTTTAAACCTAGA
GTCCTTTAACCTGTTTGTTCTGTTTTGAAAGGCTGTGCTTCTTGAGGGGA
ACTTCTTAACATTTGGGACAAAATTCTCTTCAAAAGTCTCAAGTGAGTAA
GGCCTGGAAAAATTTGTTACTTTGTACATGGGCGTGGTGCTATTTGTTCT
ACTGaattgcattttcttgaaacagcaaaaaaagtttattaagTGAAACT
GAAACAAAGATTGCTTCTTTTTGCGTATTATGCTTTTCTTGTTGAAAGAA
AACAAACCTTGAGGTTGAGGGTTGATGAAAACCTTAAAACTTAGACCTTT
TTGCGTGGGTGTAACACTTTGAAAATTATTAAGCTAAATCTTTTAAGTAA
CTTGTTTGGGCGTTGGTTAAATAATTTAATTCtgatttgtttcatttttt
taatgagcTTTCATACCTTtacttcaaactgaaaacatTTAACTAGTTAA
CACTTTTGATGGAATATCTTCCTTGTATTACATATGGTTCTTGACTTAAC
TTATTCTAAACATAATAATATTGTTTCCATAGATCTGGCATCACACATTC
TATAATGAACTCCGTGTCGCACCAGAAGAGCACCCTGTCCTCCTTACCGA
AGCTCCATTGAACCCAAAAGCTAACAGAGAAAAGATGACCCAAATCATGT
TCGAGACCTTCAACTCCCCAGCTATGTACGTCGCCATCCAAGCTGTCTTA
TCATTGTACGCCTCTGGACGTACCACCGGTATTGTCTTGGATTCTGGAGA
TGGTGTCTCTCACACTGTCCCAATCTACGAAGGTTATGCTCTTCCCCACG
CCATCATCCGTCTCGATTTGGCTGGACGTGATTTGACCGACTACTTGATG
AAAATCTTGACCGAACGTGGATACTCCTTCACCACCACTGCTGAACGTGA
AATTGTCCGTGAcatcaaagaaaaattgtgCTATGTTGCCTTGGACTTCG
AACAAGAAATGCAAACTGCTGCCTCAAGCTCCAGCTTGGAGAAATCCTAT
GAATTACCTGATGGACAAGTCATCACCATTGGAAATGAACGATTCCGATG
CCCAGAAACCCTCTTCCAACCTGCCTTCATTGGTATGGAATCTGCTGGTA
TCCACGAAACCACCTACAACTCCATCATGAAATGCGATGTTGACATCCGT
AAGGATTTGTATGCCAACACTGTCTTGTCTGGAGGTACGACTATGTTCCC
AGGTATTGCTGACCGTATGCAAAAGGAAATCTCCGCCCTCGCTCCACCAA
CCATGAAAATCAAGATCATCGCTCCACCAGAAAGAAAATACTCCGTCTGG
ATCGGAGGATCCATCTTGGCTTCACTCTCCACCTTCCAACAGATGTGGAT
CTCCAAACAAGAATACGACGAATCTGGTCCATCCATCGTCCACAGAAAAT
GCTTctaaattatttatttattttcttccaATTTTATTTTCGACTTATGT
CTTCTTATGGTTCGAATTATGCAATTCTTTGTAAAAATTCCGTTATGTAC
ATAAATACAATTTAACATACCAAAATATTCAACTTGGGTTATTCATTTCC
CTGTGTTATTCAAACCTTCGA Run BLAST on NCBI transcript from alignment at sc0000371:25190..28661- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020846 ID=TCONS_00020846|Name=TCONS_00020846|organism=Clytia hemisphaerica|type=transcript|length=3472bp|location=Sequence derived from alignment at sc0000371:25190..28661- (Clytia hemisphaerica)
TTGAAACTCAAACATAACAGAATTGACAAAGTAACAGACACATCTTCGTC
TCAAAAAATTTGTAAAGCTAAACTTAAAAAAAATCTTGCACATTTTTTTA
CAAATTGTGTTTAAGCCTTTTTGAGCTGTTGGAACAAAAAGAAGCTTTTT
ATCAAAAGGACGACACTTTCTTTAGATAACGGTATGAGCTATTATGATAT
TAAAGAAATATTTTTTCTTAACAACTGTTTAACCATAAGAATCAGTAAGC
TAAGAACGTGTTATAGTTGTTTTAACCAACCTCGTTGATACTAAGAGTTG
TATTCGAAAAGGATATATGAAGTTGGTGCAAAGTGTTGGTTCTAACAGGA
AATCAGTACGCTAACCTAATGCCTAAAATTGGTAATAACCTTTCAAAGAC
GTTGTAAAGGAAATCCTAGGGAAGACAAATATCGAATTTTAAATTTTTTT
ATAAGAATTTTAACTATGGTACAATGAGTAATCTGCCTTGCTTAATGTAA
GTTTTTGAAGAGCTGTGGTTTACTTTTAAAAGGAATTTTAGTTTTTATTG
TCTATTTTGTCTTAAAACTTACGATTAAGAGTTTTACTATCAACCCATTT
TTCAACCCTGTTTTTTCTCGCTCTTTTCTCAGTCACTCAATCAAACACAA
TAAAAATTGTCAATATTCGAATAGACAAATAAAGGACCGTTGCTTATTAG
TTTTTTTATAAGCACATTTTGAACAATCTTTGGAGGGGTTTAAGAAATTC
TTACGAGACTTTCACTTGAGATTTCGTTTCAACATATTTAGATCCTTTCG
CGTTTATTTAACTTTTGTGACCTAGTGTCTTCAGTAAAGCATAAACTTAA
CTCCCTTGTCTCATTTTTGTGAGCTAGTATCTTCAGTAAAGATAAAATTA
CTTCCTTTTCTCAAACTCCCTTTTTGGGAGTTACATAACGTGCGACTTGA
TATTTTGGNTTTTCTCAAACTCCCTTTTTGGGAGTTACTTAACGTGCGAC
TTGATATTTTGTAGAATAAGATGAACAAATGGCTGAATATTTGTCTTTTG
ATCTAAGGCCTTAAAAAGGAATATCGTATCCAGCTGGCCAAAAACATGTT
CACTTATTTGCTCGGATCTAATCGCTCACTTGCCTGAAAGGATTACCTGG
AGTCGAATCATTATTAGCGATATTATATTTATTTAGCCATCTTCTCTTAA
GTCTAACTTCTTATAAAATTAGTTAATCTTATAACTAAAGGATAGAGCGA
TTAACATAACGACGTCTGTTATTTAGCTTTTGATTATAAAAGAATGACAC
AAAGGTAATTTGATGACGGTGACGATGAAATGACATATTTTCTATCTCTT
TAAAAACAATGAACTGCTTTCAACCACTCCTCACCTCTGTACTGCGCATG
TCCTTAAAAGACCGTTTTTTCTTACTTCACCTTATTAGGTGATTTTTTAT
AAATAAACAAATGGGCTTGTCATTCGTATGTTGTCAGAATAAAAAGCAGT
GATTTTTGAAGGGTTGAATTATTCCTCTTGGATATCTTCGAACTATCAAG
ACATAAGTCGAAACATTTCTGTCTTTTCTTAGACATCTAACACAAATTCA
TATACAAAATGGCTGAAGATGATGTTGCCGCTCTCGTCGTAGACAATGGA
TCTGGTATGTGCAAAGCTGGATTTGCTGGAGATGATGCTCCAAGAGCTGT
CTTCCCCTCCATTGTTGGACGTCCCCGTCATCAAGGTGTCATGGTTGGTA
TGGGACAAAAAGACTCGTATGTCGGTGATGAAGCTCAATCCAAGAGAGGT
ATCCTCACCTTGAAATACCCCATCGAACACGGAATCGTCACCAACTGGGA
TGATATGGAAAAAGTGAGTTTTGTTTGTTTGCAAGAAACTTTAAACCTAG
AGTCCTTTAACCTGTTTGTTCTGTTTTGAAAGGCTGTGCTTCTTGAGGGG
AACTTCTTAACATTTGGGACAAAATTCTCTTCAAAAGTCTCAAGTGAGTA
AGGCCTGGAAAAATTTGTTACTTTGTACATGGGCGTGGTGCTATTTGTTC
TACTGAATTGCATTTTCTTGAAACAGCAAAAAAAGTTTATTAAGTGAAAC
TGAAACAAAGATTGCTTCTTTTTGCGTATTATGCTTTTCTTGTTGAAAGA
AAACAAACCTTGAGGTTGAGGGTTGATGAAAACCTTAAAACTTAGACCTT
TTTGCGTGGGTGTAACACTTTGAAAATTATTAAGCTAAATCTTTTAAGTA
ACTTGTTTGGGCGTTGGTTAAATAATTTAATTCTGATTTGTTTCATTTTT
TTAATGAGCTTTCATACCTTTACTTCAAACTGAAAACATTTAACTAGTTA
ACACTTTTGATGGAATATCTTCCTTGTATTACATATGGTTCTTGACTTAA
CTTATTCTAAACATAATAATATTGTTTCCATAGATCTGGCATCACACATT
CTATAATGAACTCCGTGTCGCACCAGAAGAGCACCCTGTCCTCCTTACCG
AAGCTCCATTGAACCCAAAAGCTAACAGAGAAAAGATGACCCAAATCATG
TTCGAGACCTTCAACTCCCCAGCTATGTACGTCGCCATCCAAGCTGTCTT
ATCATTGTACGCCTCTGGACGTACCACCGGTATTGTCTTGGATTCTGGAG
ATGGTGTCTCTCACACTGTCCCAATCTACGAAGGTTATGCTCTTCCCCAC
GCCATCATCCGTCTCGATTTGGCTGGACGTGATTTGACCGACTACTTGAT
GAAAATCTTGACCGAACGTGGATACTCCTTCACCACCACTGCTGAACGTG
AAATTGTCCGTGACATCAAAGAAAAATTGTGCTATGTTGCCTTGGACTTC
GAACAAGAAATGCAAACTGCTGCCTCAAGCTCCAGCTTGGAGAAATCCTA
TGAATTACCTGATGGACAAGTCATCACCATTGGAAATGAACGATTCCGAT
GCCCAGAAACCCTCTTCCAACCTGCCTTCATTGGTATGGAATCTGCTGGT
ATCCACGAAACCACCTACAACTCCATCATGAAATGCGATGTTGACATCCG
TAAGGATTTGTATGCCAACACTGTCTTGTCTGGAGGTACGACTATGTTCC
CAGGTATTGCTGACCGTATGCAAAAGGAAATCTCCGCCCTCGCTCCACCA
ACCATGAAAATCAAGATCATCGCTCCACCAGAAAGAAAATACTCCGTCTG
GATCGGAGGATCCATCTTGGCTTCACTCTCCACCTTCCAACAGATGTGGA
TCTCCAAACAAGAATACGACGAATCTGGTCCATCCATCGTCCACAGAAAA
TGCTTCTAAATTATTTATTTATTTTCTTCCAATTTTATTTTCGACTTATG
TCTTCTTATGGTTCGAATTATGCAATTCTTTGTAAAAATTCCGTTATGTA
CATAAATACAATTTAACATACCAAAATATTCAACTTGGGTTATTCATTTC
CCTGTGTTATTCAAACCTTCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020846-exon-sc0000371-1575043694:28481..28661 | TCONS_00020846-exon-sc0000371-1575043694:28481..28661 | Clytia hemisphaerica | exon |
| TCONS_00020846-exon-sc0000371-1575043694:25190..27079 | TCONS_00020846-exon-sc0000371-1575043694:25190..27079 | Clytia hemisphaerica | exon |
| TCONS_00020846-exon-sc0000371-1510915933:28481..28661 | TCONS_00020846-exon-sc0000371-1510915933:28481..28661 | Clytia hemisphaerica | exon |
| TCONS_00020846-exon-sc0000371-1510915933:25190..27079 | TCONS_00020846-exon-sc0000371-1510915933:25190..27079 | Clytia hemisphaerica | exon |
| TCONS_00020846-exon-sc0000371-1491911889:28481..28661 | TCONS_00020846-exon-sc0000371-1491911889:28481..28661 | Clytia hemisphaerica | exon |
| TCONS_00020846-exon-sc0000371-1491911889:25190..27079 | TCONS_00020846-exon-sc0000371-1491911889:25190..27079 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000371 | supercontig | sc0000371:25190..28661 - |
Blast
BLAST of TCONS_00020846 vs. Swiss-Prot (Human)
Match: ACTG (Actin, cytoplasmic 2 OS=Homo sapiens GN=ACTG1 PE=1 SV=1) HSP 1 Score: 589.726 bits (1519), Expect = 0.000e+0 Identity = 278/291 (95.53%), Postives = 287/291 (98.63%), Query Frame = 1
Query: 1033 IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPAFIGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 1905
IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM TAASSSSLEKSYELPDGQVITIGNERFRCPE LFQP+F+GMES GIHETT+NSIMKCDVDIRKDLYANTVLSGGTTM+PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 85 IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375 HSP 2 Score: 178.333 bits (451), Expect = 3.035e-49 Identity = 79/84 (94.05%), Postives = 84/84 (100.00%), Query Frame = 1
Query: 214 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKV 465
E+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEK+
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 85
The following BLAST results are available for this feature:
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