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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020844 ID=TCONS_00020844|Name=TCONS_00020844|organism=Clytia hemisphaerica|type=transcript|length=1691bp
TATAAAATTAGTTAATCTTATAACTAAAGGATAGAGCGATTAACATAACG
ACGTCTGTTATTTAGCTTTTGATTATAAAAGAATGACACAAAGGTAATTT
GATGACGGTGACGATGAAATGACATATTTTCTATCTCTTTAAAAACAATG
AACTGCTTTCAACCACTCCTCACCTCTGTACTGCGCATGTCCTTAAAAGA
CCGTTTTTTCTTACTTCACCTTATTAGgtgattttttataaataaacaaA
TGGGCTTGTCATTCGTATGTTGTCAGAATAAAAAGCAGTGATTTTTGAAG
GGTTGAATTATTCCTCTTGGATATCTTCGAACTATCAAGACATAAGTCGA
AACATTTCTGTCTTTTCTTAGACATCTAACACAAATTCATATACAAAATG
GCTGAAGATGATGTTGCCGCTCTCGTCGTAGACAATGGATCTGGTATGTG
CAAAGCTGGATTTGCTGGAGATGATGCTCCAAGAGCTGTCTTCCCCTCCA
TTGTTGGACGTCCCCGTCATCAAGGTGTCATGGTTGGTATGGGACAAAAA
GACTCGTATGTCGGTGATGAAGCTCAATCCAAGAGAGGTATCCTCACCTT
GAAATACCCCATCGAACACGGAATCGTCACCAACTGGGATGATATGGAAA
AAATCTGGCATCACACATTCTATAATGAACTCCGTGTCGCACCAGAAGAG
CACCCTGTCCTCCTTACCGAAGCTCCATTGAACCCAAAAGCTAACAGAGA
AAAGATGACCCAAATCATGTTCGAGACCTTCAACTCCCCAGCTATGTACG
TCGCCATCCAAGCTGTCTTATCATTGTACGCCTCTGGACGTACCACCGGT
ATTGTCTTGGATTCTGGAGATGGTGTCTCTCACACTGTCCCAATCTACGA
AGGTTATGCTCTTCCCCACGCCATCATCCGTCTCGATTTGGCTGGACGTG
ATTTGACCGACTACTTGATGAAAATCTTGACCGAACGTGGATACTCCTTC
ACCACCACTGCTGAACGTGAAATTGTCCGTGAcatcaaagaaaaattgtg
CTATGTTGCCTTGGACTTCGAACAAGAAATGCAAACTGCTGCCTCAAGCT
CCAGCTTGGAGAAATCCTATGAATTACCTGATGGACAAGTCATCACCATT
GGAAATGAACGATTCCGATGCCCAGAAACCCTCTTCCAACCTGCCTTCAT
TGGTATGGAATCTGCTGGTATCCACGAAACCACCTACAACTCCATCATGA
AATGCGATGTTGACATCCGTAAGGATTTGTATGCCAACACTGTCTTGTCT
GGAGGTACGACTATGTTCCCAGGTATTGCTGACCGTATGCAAAAGGAAAT
CTCCGCCCTCGCTCCACCAACCATGAAAATCAAGATCATCGCTCCACCAG
AAAGAAAATACTCCGTCTGGATCGGAGGATCCATCTTGGCTTCACTCTCC
ACCTTCCAACAGATGTGGATCTCCAAACAAGAATACGACGAATCTGGTCC
ATCCATCGTCCACAGAAAATGCTTctaaattatttatttattttcttcca
ATTTTATTTTCGACTTATGTCTTCTTATGGTTCGAATTATGCAATTCTTT
GTAAAAATTCCGTTATGTACATAAATACAATTTAACATACCAAAATATTC
AACTTGGGTTATTCATTTCCCTGTGTTATTCAAACCTTCGA Run BLAST on NCBI protein sequence of TCONS_00020844-protein >TCONS_00020844-protein ID=TCONS_00020844-protein|Name=TCONS_00020844-protein|organism=Clytia hemisphaerica|type=polypeptide|length=376bp
MAEDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ
KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE
EHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTT
GIVLDSGDGVSHTVPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYS
FTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVIT
IGNERFRCPETLFQPAFIGMESAGIHETTYNSIMKCDVDIRKDLYANTVL
SGGTTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASL
STFQQMWISKQEYDESGPSIVHRKCF Run BLAST on NCBI transcript from alignment at sc0000371:25190..27450- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020844 ID=TCONS_00020844|Name=TCONS_00020844|organism=Clytia hemisphaerica|type=transcript|length=2261bp|location=Sequence derived from alignment at sc0000371:25190..27450- (Clytia hemisphaerica)
TATAAAATTAGTTAATCTTATAACTAAAGGATAGAGCGATTAACATAACG
ACGTCTGTTATTTAGCTTTTGATTATAAAAGAATGACACAAAGGTAATTT
GATGACGGTGACGATGAAATGACATATTTTCTATCTCTTTAAAAACAATG
AACTGCTTTCAACCACTCCTCACCTCTGTACTGCGCATGTCCTTAAAAGA
CCGTTTTTTCTTACTTCACCTTATTAGGTGATTTTTTATAAATAAACAAA
TGGGCTTGTCATTCGTATGTTGTCAGAATAAAAAGCAGTGATTTTTGAAG
GGTTGAATTATTCCTCTTGGATATCTTCGAACTATCAAGACATAAGTCGA
AACATTTCTGTCTTTTCTTAGACATCTAACACAAATTCATATACAAAATG
GCTGAAGATGATGTTGCCGCTCTCGTCGTAGACAATGGATCTGGTATGTG
CAAAGCTGGATTTGCTGGAGATGATGCTCCAAGAGCTGTCTTCCCCTCCA
TTGTTGGACGTCCCCGTCATCAAGGTGTCATGGTTGGTATGGGACAAAAA
GACTCGTATGTCGGTGATGAAGCTCAATCCAAGAGAGGTATCCTCACCTT
GAAATACCCCATCGAACACGGAATCGTCACCAACTGGGATGATATGGAAA
AAGTGAGTTTTGTTTGTTTGCAAGAAACTTTAAACCTAGAGTCCTTTAAC
CTGTTTGTTCTGTTTTGAAAGGCTGTGCTTCTTGAGGGGAACTTCTTAAC
ATTTGGGACAAAATTCTCTTCAAAAGTCTCAAGTGAGTAAGGCCTGGAAA
AATTTGTTACTTTGTACATGGGCGTGGTGCTATTTGTTCTACTGAATTGC
ATTTTCTTGAAACAGCAAAAAAAGTTTATTAAGTGAAACTGAAACAAAGA
TTGCTTCTTTTTGCGTATTATGCTTTTCTTGTTGAAAGAAAACAAACCTT
GAGGTTGAGGGTTGATGAAAACCTTAAAACTTAGACCTTTTTGCGTGGGT
GTAACACTTTGAAAATTATTAAGCTAAATCTTTTAAGTAACTTGTTTGGG
CGTTGGTTAAATAATTTAATTCTGATTTGTTTCATTTTTTTAATGAGCTT
TCATACCTTTACTTCAAACTGAAAACATTTAACTAGTTAACACTTTTGAT
GGAATATCTTCCTTGTATTACATATGGTTCTTGACTTAACTTATTCTAAA
CATAATAATATTGTTTCCATAGATCTGGCATCACACATTCTATAATGAAC
TCCGTGTCGCACCAGAAGAGCACCCTGTCCTCCTTACCGAAGCTCCATTG
AACCCAAAAGCTAACAGAGAAAAGATGACCCAAATCATGTTCGAGACCTT
CAACTCCCCAGCTATGTACGTCGCCATCCAAGCTGTCTTATCATTGTACG
CCTCTGGACGTACCACCGGTATTGTCTTGGATTCTGGAGATGGTGTCTCT
CACACTGTCCCAATCTACGAAGGTTATGCTCTTCCCCACGCCATCATCCG
TCTCGATTTGGCTGGACGTGATTTGACCGACTACTTGATGAAAATCTTGA
CCGAACGTGGATACTCCTTCACCACCACTGCTGAACGTGAAATTGTCCGT
GACATCAAAGAAAAATTGTGCTATGTTGCCTTGGACTTCGAACAAGAAAT
GCAAACTGCTGCCTCAAGCTCCAGCTTGGAGAAATCCTATGAATTACCTG
ATGGACAAGTCATCACCATTGGAAATGAACGATTCCGATGCCCAGAAACC
CTCTTCCAACCTGCCTTCATTGGTATGGAATCTGCTGGTATCCACGAAAC
CACCTACAACTCCATCATGAAATGCGATGTTGACATCCGTAAGGATTTGT
ATGCCAACACTGTCTTGTCTGGAGGTACGACTATGTTCCCAGGTATTGCT
GACCGTATGCAAAAGGAAATCTCCGCCCTCGCTCCACCAACCATGAAAAT
CAAGATCATCGCTCCACCAGAAAGAAAATACTCCGTCTGGATCGGAGGAT
CCATCTTGGCTTCACTCTCCACCTTCCAACAGATGTGGATCTCCAAACAA
GAATACGACGAATCTGGTCCATCCATCGTCCACAGAAAATGCTTCTAAAT
TATTTATTTATTTTCTTCCAATTTTATTTTCGACTTATGTCTTCTTATGG
TTCGAATTATGCAATTCTTTGTAAAAATTCCGTTATGTACATAAATACAA
TTTAACATACCAAAATATTCAACTTGGGTTATTCATTTCCCTGTGTTATT
CAAACCTTCGA Coding sequence (CDS) from alignment at sc0000371:25190..27450- >TCONS_00020844 ID=TCONS_00020844|Name=TCONS_00020844|organism=Clytia hemisphaerica|type=CDS|length=2262bp|location=Sequence derived from alignment at sc0000371:25190..27450- (Clytia hemisphaerica)
ATCTGGCATCACACATTCTATAATGAACTCCGTGTCGCACCAGAAGAGCA
CCCTGTCCTCCTTACCGAAGCTCCATTGAACCCAAAAGCTAACAGAGAAA
AGATGACCCAAATCATGTTCGAGACCTTCAACTCCCCAGCTATGTACGTC
GCCATCCAAGCTGTCTTATCATTGTACGCCTCTGGACGTACCACCGGTAT
TGTCTTGGATTCTGGAGATGGTGTCTCTCACACTGTCCCAATCTACGAAG
GTTATGCTCTTCCCCACGCCATCATCCGTCTCGATTTGGCTGGACGTGAT
TTGACCGACTACTTGATGAAAATCTTGACCGAACGTGGATACTCCTTCAC
CACCACTGCTGAACGTGAAATTGTCCGTGACATCAAAGAAAAATTGTGCT
ATGTTGCCTTGGACTTCGAACAAGAAATGCAAACTGCTGCCTCAAGCTCC
AGCTTGGAGAAATCCTATGAATTACCTGATGGACAAGTCATCACCATTGG
AAATGAACGATTCCGATGCCCAGAAACCCTCTTCCAACCTGCCTTCATTG
GTATGGAATCTGCTGGTATCCACGAAACCACCTACAACTCCATCATGAAA
TGCGATGTTGACATCCGTAAGGATTTGTATGCCAACACTGTCTTGTCTGG
AGGTACGACTATGTTCCCAGGTATTGCTGACCGTATGCAAAAGGAAATCT
CCGCCCTCGCTCCACCAACCATGAAAATCAAGATCATCGCTCCACCAGAA
AGAAAATACTCCGTCTGGATCGGAGGATCCATCTTGGCTTCACTCTCCAC
CTTCCAACAGATGTGGATCTCCAAACAAGAATACGACGAATCTGGTCCAT
CCATCGTCCACAGAAAATGCTTCTAAATGGCTGAAGATGATGTTGCCGCT
CTCGTCGTAGACAATGGATCTGGTATGTGCAAAGCTGGATTTGCTGGAGA
TGATGCTCCAAGAGCTGTCTTCCCCTCCATTGTTGGACGTCCCCGTCATC
AAGGTGTCATGGTTGGTATGGGACAAAAAGACTCGTATGTCGGTGATGAA
GCTCAATCCAAGAGAGGTATCCTCACCTTGAAATACCCCATCGAACACGG
AATCGTCACCAACTGGGATGATATGGAAAAAATCTGGCATCACACATTCT
ATAATGAACTCCGTGTCGCACCAGAAGAGCACCCTGTCCTCCTTACCGAA
GCTCCATTGAACCCAAAAGCTAACAGAGAAAAGATGACCCAAATCATGTT
CGAGACCTTCAACTCCCCAGCTATGTACGTCGCCATCCAAGCTGTCTTAT
CATTGTACGCCTCTGGACGTACCACCGGTATTGTCTTGGATTCTGGAGAT
GGTGTCTCTCACACTGTCCCAATCTACGAAGGTTATGCTCTTCCCCACGC
CATCATCCGTCTCGATTTGGCTGGACGTGATTTGACCGACTACTTGATGA
AAATCTTGACCGAACGTGGATACTCCTTCACCACCACTGCTGAACGTGAA
ATTGTCCGTGACATCAAAGAAAAATTGTGCTATGTTGCCTTGGACTTCGA
ACAAGAAATGCAAACTGCTGCCTCAAGCTCCAGCTTGGAGAAATCCTATG
AATTACCTGATGGACAAGTCATCACCATTGGAAATGAACGATTCCGATGC
CCAGAAACCCTCTTCCAACCTGCCTTCATTGGTATGGAATCTGCTGGTAT
CCACGAAACCACCTACAACTCCATCATGAAATGCGATGTTGACATCCGTA
AGGATTTGTATGCCAACACTGTCTTGTCTGGAGGTACGACTATGTTCCCA
GGTATTGCTGACCGTATGCAAAAGGAAATCTCCGCCCTCGCTCCACCAAC
CATGAAAATCAAGATCATCGCTCCACCAGAAAGAAAATACTCCGTCTGGA
TCGGAGGATCCATCTTGGCTTCACTCTCCACCTTCCAACAGATGTGGATC
TCCAAACAAGAATACGACGAATCTGGTCCATCCATCGTCCACAGAAAATG
CTTCTAAATGGCTGAAGATGATGTTGCCGCTCTCGTCGTAGACAATGGAT
CTGGTATGTGCAAAGCTGGATTTGCTGGAGATGATGCTCCAAGAGCTGTC
TTCCCCTCCATTGTTGGACGTCCCCGTCATCAAGGTGTCATGGTTGGTAT
GGGACAAAAAGACTCGTATGTCGGTGATGAAGCTCAATCCAAGAGAGGTA
TCCTCACCTTGAAATACCCCATCGAACACGGAATCGTCACCAACTGGGAT
GATATGGAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020844-exon-sc0000371-1575043694:26799..27450 | TCONS_00020844-exon-sc0000371-1575043694:26799..27450 | Clytia hemisphaerica | exon |
| TCONS_00020844-exon-sc0000371-1575043694:25190..26228 | TCONS_00020844-exon-sc0000371-1575043694:25190..26228 | Clytia hemisphaerica | exon |
| TCONS_00020844-exon-sc0000371-1510915933:26799..27450 | TCONS_00020844-exon-sc0000371-1510915933:26799..27450 | Clytia hemisphaerica | exon |
| TCONS_00020844-exon-sc0000371-1510915933:25190..26228 | TCONS_00020844-exon-sc0000371-1510915933:25190..26228 | Clytia hemisphaerica | exon |
| TCONS_00020844-exon-sc0000371-1491911889:26799..27450 | TCONS_00020844-exon-sc0000371-1491911889:26799..27450 | Clytia hemisphaerica | exon |
| TCONS_00020844-exon-sc0000371-1491911889:25190..26228 | TCONS_00020844-exon-sc0000371-1491911889:25190..26228 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000371 | supercontig | sc0000371:25190..27450 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00020844 vs. Swiss-Prot (Human)
Match: ACTB (Actin, cytoplasmic 1 OS=Homo sapiens GN=ACTB PE=1 SV=1) HSP 1 Score: 761.14 bits (1964), Expect = 0.000e+0 Identity = 359/374 (95.99%), Postives = 370/374 (98.93%), Query Frame = 2
Query: 404 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPAFIGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 1525
+DD+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM TAASSSSLEKSYELPDGQVITIGNERFRCPE LFQP+F+GMES GIHETT+NSIMKCDVDIRKDLYANTVLSGGTTM+PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 2 DDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
The following BLAST results are available for this feature:
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