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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020838 ID=TCONS_00020838|Name=TCONS_00020838|organism=Clytia hemisphaerica|type=transcript|length=2277bpRun BLAST on NCBI transcript from alignment at sc0000371:175888..197134+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020838 ID=TCONS_00020838|Name=TCONS_00020838|organism=Clytia hemisphaerica|type=transcript|length=21247bp|location=Sequence derived from alignment at sc0000371:175888..197134+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00020838 vs. Swiss-Prot (Human)
Match: VWDE (von Willebrand factor D and EGF domain-containing protein OS=Homo sapiens GN=VWDE PE=2 SV=4) HSP 1 Score: 216.853 bits (551), Expect = 2.974e-58 Identity = 174/577 (30.16%), Postives = 258/577 (44.71%), Query Frame = 1
Query: 583 CDRQIKTGWYRF---KSPAGSIMPEQCPNINSCGTTLPIWLNG------AHPTEXXXXXXXXXXXXY--PGNNCCGHTYNIDIKRCQDEVQGEDYFVYNLPATPGCPMSYCIGNETRCPDGERSPNGFSP-----GCTNEF-----PKLKGKPEVTVGSHDNRIRFTCDFEPEQIKNNAKYKVSWYTRTSDGNAELVKTETLHGNQTKSF-LQNTDGQKFCLQKNFFCEVSSVFPDSEDISDTK-RSDDFFAGIKISPTTIDLAENDAPRELKFETTVPITCEPFFP---DCAVDLEVAQTQNDG--------VLSFCKISFKKGSAGQVKT-----MEVVAKRDFIDDGDKSMKIKFHIPLTLFVPDWNCHEELPD-VTVHTKDVTTANCYSNGDPHITTFDNRRFDHYRVGDYIYTKSGARLFEVHVRTFVCAS----VSCNCGVAAREGDDVMVVDMCRDNVPRAR---FASTVEPQPGTKINRSPDGKIFEFSFPSGASVRFEARRWFGDTYYANIVVKLPSDDYKNTSGLCGIWDSSSTNDLTGKEGQQFQGRGQAPLGFTESWKLTPGSSL 2172
CD + GWYRF PA MP +C +N CGT PIWL+ P E+ T+ +CC + ++ C + + VY L T GC M YC + D P G C + P G+PEV V ++R+ C F+ KN+ + ++W S +++ VK E ++F L DG L FC S F ++ + S +FFAG K+ P ++E+ L+ E+TVPI C F +C + L++ +T G LS C + + S+ T + A DF DGD+ I P+ WN +PD + + KDV TA CY+ DPHI TFD R +D+++ G ++ KS +R FEVHVR + C S VSCNCG A+EG D++ DMC + ++ F + + KI+ S G+ F SGA +R + W ++ ++ PS DY+NT GLCG +D + ND K G Q + F W++ PG S+
Sbjct: 55 CDHSLSPGWYRFLILDRPAE--MPTKCVEMNHCGTQAPIWLSLRDSETLPSPGEIKQLTACATWQFLFSTTKDCCLFQIPVSVRNCGN------FSVYLLQPTQGC-MGYCAEAIS---DARLHPCGSDETETGGDCVRQLAASLPPPPAGRPEVLVELIESRLFCRCSFDVPATKNSVGFHIAW----SRLSSQEVKEELTQETTVQAFSLLELDGINLRLGDRIFCSASVFFLENPHVQSVAIESQEFFAGFKLQPELSTISEDGKEYYLRIESTVPIICSEFSELDQECKISLKL-KTIGQGREHLGLNLALSSCHVDLLQTSSCANGTCSHTFVYYTAVTDFSRDGDRVSNIVVQ-PIVNEDFLWN--NYIPDSIQIKVKDVPTAYCYTFTDPHIITFDGRVYDNFKTGTFVLYKSMSRDFEVHVRQWDCRSLHYPVSCNCGFVAQEGGDIVTFDMCNGQLRESQPYLFIKSQDVTRNIKISESYLGRKVTIWFSSGAFIRADLGEW-----GMSLTIRAPSVDYRNTLGLCGTFDENPENDFHDKNGMQIDQNFNNYVAFINEWRILPGKSM 606 The following BLAST results are available for this feature:
BLAST of TCONS_00020838 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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