TCONS_00020805 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020805
Unique NameTCONS_00020805
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length881

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020805 ID=TCONS_00020805|Name=TCONS_00020805|organism=Clytia hemisphaerica|type=transcript|length=881bp
ttttcatgaaaataacattttggTTTGGagatcataaaaaataaaaaata
tgaaaaactctttttggttgctttggttgaaaatatttttctaataatGA
TTCCATACTGATGCCATTGAAGCTGAGAAAATCTACCAGgtTTGAAAGAA
GCAGAAGATCCGAAAAGAaccaaaagaagaagaaaacatcTCACTTCGGT
CAAGAATTATTAGAGGCTGTATCAATCGTTACTCTACTGGCAACTTTTGG
ACCATTATGGAGTACCTGGTACCTCTTGGTAGTCACTGCATTCTTGGTTT
TTATTATTGGTATTGTGTACAAAACTGGTGAACGCAACGGACAAGTTTTT
CTGAAATTCAAGAAATCAGTTAACAAACTCAACAAGAAGCGAGTTACTAT
ACAAGGTTCAAGACCAAGGTTAATGACAAGGACTTCGTCACTTAGTAATG
TCGTTTTCCAGGATAATATTCCGAACTTGATTAATGATAAATATCATTgc
atttctggcaaaactggaCGAAACTCGGCATCAAAGCCAGTGAGGAGGCg
tcaaaagaaaacaaaatatagCGCTTTGGTGAATTGCTTTATCAGGAAAT
TGACAAGAAGTTTGAGTACCTCATCCAACAGAAATGCATCTTATGCGGAT
GTCAAGGTCAAacgaaaaatgatgaaaaaatcaCGGACACTTTAAAATGG
GTTACACCTCTTTTTCGGGTTGTTTACAAATGGTGAAGTTAGATTTAATG
CAGACAAAAATTCTCGCTCGGCTTTGATCCTACaacaaaaagtgtaaaaa
actcgggcaaaaaataatgaaagtttgaaggttcatttaaaaacaatatt
GACAATCCATTGACTGATTCTATAACGACAT
Run BLAST on NCBI

transcript from alignment at sc0000370:250212..255680-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020805 ID=TCONS_00020805|Name=TCONS_00020805|organism=Clytia hemisphaerica|type=transcript|length=5469bp|location=Sequence derived from alignment at sc0000370:250212..255680- (Clytia hemisphaerica)
TTTTCATGAAAATAACATTTTGGTTTGGAGATCATAAAAAATAAAAAATA
TGAAAAACTCTTTTTGGTTGCTTTGGTTGAAAATATTTTTCTAATAATGA
TTCCATACTGATGCCATTGAAGCTGAGAAAATCTACCAGGTTACTGTTGT
TTTAATTAATTCATAAGAAGTTTTAAATCTATAGCCAGTTGTGGGGTGGG
GGTGCTTGAAGGAATCAGGTATTAGGTGCTGAGTATGCACTCTCTTAGGA
CCATTCGGGTTCTCTCAGGGTACAAATGTGTCGAATGTTTTCTTGCACTT
TCATGGCTAGTTTTTGAAGATAGTCTGTTTTTTTCAATTTTAAGGTTTGA
AAGAAGCAGAAGATCCGAAAAGAACCAAAAGAAGAAGAAAACATCTCACT
TCGGTCAAGAATTATTAGAGGCTGTATCAATCGTTACTCTACTGGCAACT
TTTGGACCATTATGGAGTACCTGGTACCTCTTGGTAGTCACTGCATTCTT
GGTTTTTATTATTGGTATTGTGTACAAAACTGGTGAACGCAACGGACAAG
TTTTTCTGAAATTCAAGAAATCAGTTAACAAACTCAACAAGAAGCGAGTT
ACTATACAAGGTTCAAGACCAAGGTTAATGACAAGGACTTCGTCACTTAG
TAATGTCGTTTTCCAGGATAATATTCCGAACTTGATTAATGANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNATACATTTTATAAAAGAAATCAAA
AGACTTTAACGACCAATTACCGACACATTCAACTCCTGTTTTCTTTATAC
CTCTATGATTATATGCAATGAAGATGAACAAACTTGTTACCTTCTAATAC
TATGCTTCTACAAACTGTATAATCTTCGATGCAAGAATTCCCGTTATGGG
AATAGGTGCTAACCTAAGCTAGAGGTCACTGCACAAACGAAGCAGGTTTT
AAAGTTCCTCTGTACCAAAAAGTTCATTTATTCCTCTTCTTTTTTCATCT
TCATTTTGTCGAAAAAATTTAGATTTTTTTCACAAAAATTGTAGCGATCT
TTTTAACGGTATGAAATATGCTAGGATTGAAGCATTCGTTGAAAAATTGT
CTCGCATCGTATTCCCACTCTCGTTAAAGAATTAAAGATGGGAAAAAGCC
TAACCCCTACAATCCTGGTTGAAATATAATGAGTATTCCGGTTATTTTAA
CGTTTTTCAAGATTTAAAGTTCCAGCGAGAAAGTCGATTTTGGGCTATCT
CTTTAATTAAATCGAATATTTCAATTTGGGAGGGGTTTATAGACTTCCAG
GCTACATTCTGAGCCTTATTGGACTATTTTTGAACTTTTGGATCCTCAGA
TCCAAAGGTCTTAAGTCTAGCGTTAAAACTCAGAGTTAAAACTCTTCCTT
TCGAACCTACTTTAGAGCACTTACAAATCGATTGTGGTTTCAAAACACCC
CGGTGAATTTCCCTTTTGTGCCAAGTATTTTGTCACTGATTGTAGATATC
TTCATATCAGCTAGGATAATATTCAATGGTGGTACTTTGAATAGTATATA
GCGCCCAAAATATGGCGTAATGACAATATGTAAATGACATCCTTAGGTTT
TGTTGCCTAATTCCATGGTGGTGTTATTATTAGCATATTCTTAATTTTTT
GGCAAATCTCATCATGAATATTTTCATAAAAAAAGCGTACATCCCTATCC
TTGCTGACACTCTCAAAACAAATAAACAAAAACGTTTGAAGAACCTTTTC
CCTTCAAAAATACAAAAAAAAGTTTTCCTTCAATAATACGGAGAATGTTT
TCCTTAAATATTACGGACAATGTTTTCCTTCAAGATCATAAAAATGCTTT
CCTTTTAAAATGCAAAGAACCTTTTCCTTCAAAAATGCCTAGAATCATTT
TCCTTCAGAAATACAAAAAATATTTTCCCTCAAGAGATACAAAGATTATC
TTTATCTGATAGTTAAAGTTAGGGATCCTTGATCCACATGATGCTGCCCA
AACAAAGTAATTTCTAGGGTAGCTTCTGCTAGTGAGGAGTAGATTAGCTT
CTGGCTCCACAAAATAAATCAGATACCTAGAAAATCGTAGTTTTTCCACT
TAATGAAATTCATCCTTATATAAATATAAAATACAAAAAGTATTACGTAA
AAAGTTTATCTCTTAGACGACACTCTGCCCTTTGGGATTCCATCGAGTTA
TTATCAGTTTCATGGAGGCGATTTTTTTTGTAATTACCAGATTGCTGGCA
TATACACTGCATCATGTGCCCAAATTAACGCAATAATTACTAATTGTGTA
AAGATTACCTTTAATGACCTCCGTGCATCGAAAATTAATGTATCAGTAGG
GAAGCATATTGCCAAACTATTAAAGCTGGTCTCAGCTAATTATTGCGCAA
CTGAAACGAGAGGGGGTGTAATGGTATACAATTAAAAATGTTGGGACTGT
TGCAAAATGACGTCCTACTTTCCAAAAAGACAAAATCATATCCAACGCAG
GTTATGACCTATTAGTAGTAGTTATACGTGATCCAATCCAAGAGATGCCT
TGGAGTTTTTACAAGATACTTCACTAATTGGTCATTTAAAGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTTAAAATGTCGTGCTA
AAGAGATCTCCTTTTCTGGAATATTTCAGGATATTCAATTGTATTGATTT
CAACCGTCGATAGGAAAATTAGAAATTTAAAAGTTCCCGGAGTGAATTAT
TTTGAACTTTTTTACCCTGACCAACATTTCATGAAATATTAAAATACGAA
AGCTATTTCCAAATTTTTTTTTCAAAAAGAAAATGTTTAAGCCTCTTTAA
AGTTTCATTAGAGTACCGTTTTATTTTTTAAACAAAAAAATTGAGGTGTT
TTTTTTTAGACACCAGCAAATCTTTTCAGGAGATTTTCATGAAAATAACA
TTTTGGTTTGGAGATCATAAAAAATAAAAAATATGAAAAACTCTTTTTGG
TTGCTTTGGTTGAAAATATTTTTCTAATAATGATTCCATACTGATGCCAT
TGAAGCTGAGAAAATCTACCAGGTTACTGTTGTTTTAATTAATTCATAAG
AAGTTTTAAATCTATAGCCAGTTGTGGGGTGGGGGTGCTTGAAGGAATCA
GGTATTAGGTGCTGAGTATGCACTCTCTTAGGACCATTCGGGTTCTCTCA
GGGTACAAATGTGTCGAATGTTTTCTTGCACTTTCATGGCTAGTTTTTGA
AGATAGTCTGTTTTTTTCAATTTTAAGGTTTGAAAGAAGCAGAAGATCCG
AAAAGAACCAAAAGAAGAAGAAAACATCTCACTTCGGTCAAGAATTATTA
GAGGCTGTATCAATCGTTACTCTACTGGCAACTTTTGGACCATTATGGAG
TACCTGGTACCTCTTGGTAGTCACTGCATTCTTGGTTTTTATTATTGGTA
TTGTGTACAAAACTGGTGAACGCAACGGACAAGTTTTTCTGAAATTCAAG
AAATCAGTTAACAAACTCAACAAGAAGCGAGTTACTATACAAGGTTCAAG
ACCAAGGTTAATGACAAGGACTTCGTCACTTAGTAATGTCGTTTTCCAGG
ATAATATTCCGAACTTGATTAATGATAAATATCATTGCATTTCTGGCAAA
ACTGGACGAAACTCGGCATCAAAGCCAGTGAGGAGGCGTCAAAAGAAAAC
AAAATATAGCGCTTTGGTGAATTGCTTTATCAGGAAATTGACAAGAAGTT
TGAGTACCTCATCCAACAGAAATGCATCTTATGCGGATGTCAAGGTCAAA
CGAAAAATGATGAAAAAATCACGGACACTTTAAAATGGGTTACACCTCTT
TTTCGGGTTGTTTACAAATGGTGAAGTTAGATTTAATGCAGACAAAAATT
CTCGCTCGGCTTTGATCCTACAACAAAAAGTGTAAAAAACTCGGGCAAAA
AATAATGAAAGTTTGAAGGTTCATTTAAAAACAATATTGACAATCCATTG
ACTGATTCTATAACGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011668XLOC_011668Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020805-exon-sc0000370-1575043694:255542..255680TCONS_00020805-exon-sc0000370-1575043694:255542..255680Clytia hemisphaericaexon
TCONS_00020805-exon-sc0000370-1575043694:250212..250953TCONS_00020805-exon-sc0000370-1575043694:250212..250953Clytia hemisphaericaexon
TCONS_00020805-exon-sc0000370-1510915933:255542..255680TCONS_00020805-exon-sc0000370-1510915933:255542..255680Clytia hemisphaericaexon
TCONS_00020805-exon-sc0000370-1510915933:250212..250953TCONS_00020805-exon-sc0000370-1510915933:250212..250953Clytia hemisphaericaexon
TCONS_00020805-exon-sc0000370-1491911889:255542..255680TCONS_00020805-exon-sc0000370-1491911889:255542..255680Clytia hemisphaericaexon
TCONS_00020805-exon-sc0000370-1491911889:250212..250953TCONS_00020805-exon-sc0000370-1491911889:250212..250953Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000370supercontigsc0000370:250212..255680 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.102964	0	0	0	0	0.678735	0.254175	0.355909	0.11021	0.534862	0.281282	1.93114	1.13038	0	0.160856	0.277425	0.365596	2.52542	0	0.663575	0.896307	0	1.10066	0	1.51763	0.289564	0.154514	0	0.119399
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020805 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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