TCONS_00020774 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020774
Unique NameTCONS_00020774
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1170

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020774 ID=TCONS_00020774|Name=TCONS_00020774|organism=Clytia hemisphaerica|type=transcript|length=1170bp
GGATTATGGGTATTACCCTATGTTTCATGTTCTTAGTAATAGTGTTTTAG
TAGTGAAGGAAGTCATATCCAAACAGATTTTCTCGTCTCATGACATATGA
CTTGTATGGtattttgtttgaaataaaaaggtGTGTTTTTGTTGTTCCAT
ATCACATTGAATAAGCATATCAAAAAGTCATATCAAAAAGTACTAACTCA
ACTCAAAGTTAACTAACAAGAGAGTTTTGAACAAAACCATGGATCGTGTT
TTAGGTTTAGTATTATTTTTTACAGTAATTTTTTGCGGTACCGCTTCGGC
TGCGGATACATGCGATGTAGTTGAAGGTTTAGAAGGATGTGCTTGTATCA
TGAGAAACAGTTCAAAAGTTGTTTCACTTCAAGACCTTGTTGGTAATAAT
ACGAATGGCAAACCTATCAGATTTGACCGAGCCGATGGAAACAAGAAAGA
CTGGTACTTTGCTTATCACCCATGTGGAACCTTTGATATGTTTTTGAACC
GACCCAATCCAAGAGTTGGAGATTATCCTTGCAAAGATACTTCCGTTGGA
CGGTTCACTGACAATGCAAATCATATCTGTGAAGGCCTTGGTGATTTGTC
GGAAAGTAAATTTGAATTCAATGAAGGTTATGAATATCCTGTTGTTGCAC
CACTATCTGTTGTTTTCAGAAACACCAGCTCAAGTCACGGTGCACGTATT
TCATTGGTTTGTAATGAGACTCTTTCAGTAGAAGATACCGAGTTCAAATA
TCTCAATGTCACCGAAGGACCAACCGAATATTATCATTTCTCATTGACTG
GTCCCTGTAGTTGCCCAGGAGGATGTAAATACATTAAACCAAAGCCCAAA
CCTTCAAATGCTATGACCAACTTGCCGAATCTCGGTTTCATTTTCGTCAC
AGCAATCATGATGGTGTTGTCTAAATTGTAATCATATCTAGTTCTCTGAA
GACATAAGCATCaaagaatagaagaaaaaaCAACGAGTCAttggaaatga
aaattttctcccTGGCTGGAgaaagattttctttctttgttaaaATACGA
TAAACTACAATTTTTGTATTCTTATATTGatttaatgttatgtttacTTT
TTGTATTACTGTAGTATTTCTACTGTTTTAGACAAAGTTGTGCtaagaga
aaaaaaagtgtacaaattaA
Run BLAST on NCBI

transcript from alignment at sc0000370:116083..119116+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020774 ID=TCONS_00020774|Name=TCONS_00020774|organism=Clytia hemisphaerica|type=transcript|length=3034bp|location=Sequence derived from alignment at sc0000370:116083..119116+ (Clytia hemisphaerica)
GGATTATGGGTATTACCCTATGTTTCATGTTCTTAGTAATAGTGTTTTAG
TAGTGAAGGAAGTCATATCCAAACAGATTTTCTCGTCTCATGACATATGA
CTTGTATGGtattttgtttgaaataaaaaggtGTGTTTTTGTTGTTCCAT
ATCACATTGAATAAGCATATCAAAAAGTCATATCAAAAAGTACTAACTCA
ACTCAAAGTTAACTAACAAGAGAGTTTTGAACAAAACCATGGATCGTGTT
TTAGGTTTAGTATTATTTTTTACAGTAATTTTTTGCGGTACCGCTTCGGC
TGCGGATACATGCGATGTAGTTGAAGGTTTAGAAGGATGTGCTTGTATCA
TGAGAAACAGTTCAAAAGTTGTTTCACTTCAAGACCTTGTTGGTAATAAT
ACGAATGGCAAACCTATCAGGTACAGATTTTTGTATTATTAATTTGACCT
ATCTTTTCCGGTTAAATTGACTAAATATTGTGGAAATAATCCCTCCCCCC
TAGTATCAATATTGATGAGTGGAGAGGCTGCCGCCATGCTCAGAACAACA
CTGGTATTAGGGGCGAAGggatttttcaggaaattgccacatattttgtc
actgattgtagcttACAGGTTTTTATAATAACAACTACAACTGCATTTTT
TTTCGCCAAATCGAACGcaacaattaaaattttaatcgctaaagattttg
aaatcaGATAAGCTTTTAAGACTTTCAATTGCATTTTCTTACTTTTAGAT
TTGACCGAGCCGATGGAAACAAGAAAGACTGGTACTTTGCTTATCACCCA
TGTGGAACCTTTGATATGTTTTTGAACCGACCCAATCCAAGAGTTGGAGA
TTATCCTTGCAAAGATACTTCCGTGAGTGTTTTTACGATTTTCTCATCTT
CTTGTATGAGGACactcaattttatttcaatgtctATCTGGCGTCCAGAT
AGCGTTAGATATGTACGTTGAAACAACTATGTGTGCGTCAGCTATTATTC
ATATTCTATCTCGTCTAAATCTGATGATTATATTGTAAGTTTATGTTGAT
TCGGGTTGAGTAATTATCCCGATTATATCGATTATCCCCTTGTTACAGAA
TTTTCAGGAAGCCAAGTATTTCATAGCGATTCGGACCCCAATTTAAATAT
TGTTGGCTTTAAGTTGTATTTCACAACCTGAAAAAGAAATACTAaggcga
aaattaaaaaaatgtagtgtttccggaatgcgggtgaaggaaaaaagctc
tcattcggccggccggaaaaatttttattttgctttttttgataacctat
aagatcattgaaatagaactttaaagatacaTAACTTTTATGCACAAACA
GTAAGCCcggaatactaatgtatcaactattaacgaagtctgcggccggg
tcagaaaataattttttagcgGTTTCCgaaaacactacattttttcattt
tcccctgaatgaaatattatatatagTCATAATTTTAATCAACTTGTGGT
AATCTTTCATGTTCATTTTTAGGTTGGACGGTTCACTGACAATGCAAATC
ATATCTGTGAAGGCCTTGGTGATTTGTCGGAAAGTAAATTTGAATTCAAT
GAAGGTTATGAATATCCTGTTGTTGCACCACTATCTGTTGTTTTCAGGTA
ATTTATTATCGTTTAATTTTGTAGTAATCAAACAAAATACCTTTTAACCG
TGTAGTGATTTTTCTACTAGCTTTATCAGTCCGTTtcctttcttttcatt
ttgttcTCTTGCTATGTAGAAACACCAGCTCAAGTCACGGTGCACGTATT
TCATTGGTTTGTAATGAGACTCTTTCAGTAGAAGATACCGAGTTCAAATA
TCTCAATGTCACCGAAGGACCAACCGAATATTATGTAAGTTTGGATTTGT
TTTTCagtgtgttttgtttttactaAACATTTTCCTTTTGGTTACAAGCT
TGATTTTGCCATTAGGGGTATTTCGAAGGACAAAGAGCTAGCTAGTTCCT
AAAGTAAAGTAAAGCTAGCTAATGGCTTCACATCTAGTCACATCCCATGC
TTCTCGCTTCCCCAACTAATTTCCCAACGAGCTAAGAGATTTACTGTATA
GATTTACAAGGAAATCCTGTAGAAAAGAGTCACTAATTCCATTGACATCA
TGTTCAGGAGAATAGTCCGCTTGTATGAGGGATTTCAATGAGCACACCAA
GTTTGGAACATACTGAAATAATATAAGCAGCACTTTTACCCAACGTTTGC
GACAACAGGAACCGTATAGTTTGATCTATTCCAATTTGCTACCAAAGGAA
TGTGAGAAATCTGATATTGAACGTCCGAAAGTTTTCATCTGATTAATTTC
ATTCATACCTCTGTTCTTTATTGCAGCATTTCTCATTGACTGGTCCCTGT
AGTTGCCCAGGAGGATGTAAATACATTAAACCAAAGCCCAAACCTTCAAA
TGCTATGACCAACTTGCCGAATCTCGGTAAGTAAagcattgtttactttg
tgatTTATTATTTGATTACAATACAGTATTTCAAATAACGAGTATTCCaa
gatataagttatttttTCCTCGATGTTGATGTCTGAATAATACTCGTGAA
AAAGATGGGGTATAATTCTTTCTTGGAAATGGTTCCTATTTTTTGACCGT
GTCGCCGATAGATTTTTCCAGGAATCTATTGAACTCTTCGACCGAAGATT
TAAGTTTATTAtgtgtttttaaatattcttcTCTTTCTACGATTTTAGGT
TTCATTTTCGTCACAGCAATCATGATGGTGTTGTCTAAATTGTAATCATA
TCTAGTTCTCTGAAGACATAAGCATCaaagaatagaagaaaaaaCAACGA
GTCAttggaaatgaaaattttctcccTGGCTGGAgaaagattttctttct
ttgttaaaATACGATAAACTACAATTTTTGTATTCTTATATTGatttaat
gttatgtttacTTTTTGTATTACTGTAGTATTTCTACTGTTTTAGACAAA
GTTGTGCtaagagaaaaaaaagtgtacaaattaA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011659XLOC_011659Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020774-exon-sc0000370-1491911889:116083..116502TCONS_00020774-exon-sc0000370-1491911889:116083..116502Clytia hemisphaericaexon
TCONS_00020774-exon-sc0000370-1510915933:116083..116502TCONS_00020774-exon-sc0000370-1510915933:116083..116502Clytia hemisphaericaexon
TCONS_00020774-exon-sc0000370-1575043694:116083..116502TCONS_00020774-exon-sc0000370-1575043694:116083..116502Clytia hemisphaericaexon
TCONS_00020774-exon-sc0000370-1491911889:116831..116954TCONS_00020774-exon-sc0000370-1491911889:116831..116954Clytia hemisphaericaexon
TCONS_00020774-exon-sc0000370-1510915933:116831..116954TCONS_00020774-exon-sc0000370-1510915933:116831..116954Clytia hemisphaericaexon
TCONS_00020774-exon-sc0000370-1575043694:116831..116954TCONS_00020774-exon-sc0000370-1575043694:116831..116954Clytia hemisphaericaexon
TCONS_00020774-exon-sc0000370-1491911889:117605..117729TCONS_00020774-exon-sc0000370-1491911889:117605..117729Clytia hemisphaericaexon
TCONS_00020774-exon-sc0000370-1510915933:117605..117729TCONS_00020774-exon-sc0000370-1510915933:117605..117729Clytia hemisphaericaexon
TCONS_00020774-exon-sc0000370-1575043694:117605..117729TCONS_00020774-exon-sc0000370-1575043694:117605..117729Clytia hemisphaericaexon
TCONS_00020774-exon-sc0000370-1491911889:117852..117966TCONS_00020774-exon-sc0000370-1491911889:117852..117966Clytia hemisphaericaexon
TCONS_00020774-exon-sc0000370-1510915933:117852..117966TCONS_00020774-exon-sc0000370-1510915933:117852..117966Clytia hemisphaericaexon
TCONS_00020774-exon-sc0000370-1575043694:117852..117966TCONS_00020774-exon-sc0000370-1575043694:117852..117966Clytia hemisphaericaexon
TCONS_00020774-exon-sc0000370-1491911889:118459..118558TCONS_00020774-exon-sc0000370-1491911889:118459..118558Clytia hemisphaericaexon
TCONS_00020774-exon-sc0000370-1510915933:118459..118558TCONS_00020774-exon-sc0000370-1510915933:118459..118558Clytia hemisphaericaexon
TCONS_00020774-exon-sc0000370-1575043694:118459..118558TCONS_00020774-exon-sc0000370-1575043694:118459..118558Clytia hemisphaericaexon
TCONS_00020774-exon-sc0000370-1491911889:118831..119116TCONS_00020774-exon-sc0000370-1491911889:118831..119116Clytia hemisphaericaexon
TCONS_00020774-exon-sc0000370-1510915933:118831..119116TCONS_00020774-exon-sc0000370-1510915933:118831..119116Clytia hemisphaericaexon
TCONS_00020774-exon-sc0000370-1575043694:118831..119116TCONS_00020774-exon-sc0000370-1575043694:118831..119116Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000370supercontigsc0000370:116083..119116 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.08873	0.736093	0.51278	0.167233	0.625408	0.247103	3.57743	1.95367	35.278	53.0132	71.2299	29.7313	102.824	95.9413	244.917	154.094	76.4991	86.6565	205.579	179.522	46.8549	48.4851	30.8115	30.3727	11.2032	23.33	5.79624	13.0346	240.789	243.107
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020774 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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