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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020764 ID=TCONS_00020764|Name=TCONS_00020764|organism=Clytia hemisphaerica|type=transcript|length=1197bp
AAATTATTTCAATAAACTCAACTAAAAAATTTGAGAAAATCTCTGTCCTC
TATAAATTTTGGGGCAGGCAAACTTCAAAAATGGTTTAATTTAAGTGAAC
TTTCGGACTCACGATCCTTGTGTGAAACATTTGTAATATCTGGTGGTATT
TCTTGTTCTCTTTTTTGGGGCCTGGGGCAACTTTTTGCCCCAAAACAAGT
CTATAATCTTAAAAATCTTACTTATAAATTTTACAATACTACCAATAATT
GACTCAAAAGACACTGAAGTCAGCCAATGGGTTTTGCACATTGGACAGCA
AACAACCCAAGCAGTGAAGCTATCATTCATTCAATAAGAATATTTCAGAA
GAGGTTGGCGTATATGGACTTGATCGAATTCAGGGTGTAGACAGAAATAT
CACAGCTATGAGAAAGATATTTCAAGTCAAGAAAAACTTGGTTGGCCCAG
CTGCTTATTTTGCATTCGAGATCCTCTCCTATAACAATGACACTACCATT
CAGAATGAAAGAACTGGTGAGCGGTACCAAGTCTTCAATGGAACCATCAG
ACTCAATATCATTATTGGTCGTTGGAAATTTTGTGGTCAAAACATTCAGT
GTAAAGATAAAGACCAAAAGAACGAACGTGgtcaatttttagattttgag
ttAAATTTCAACGGAGATGAACAGCTTCGGGATCCGATTGTGAGGACTGG
GTTGCGAGCAACAAGTTTTGTACCAGGAGCCAAAAGACCATTGACTTATG
ATTATGGAGGAGTTGATGTCACTCCATCCTTCAAGTACCAACAAAATATC
ACATGGCCTGTGTTCCCATCTCAATATCCAGACGTCAATGGAAATACCAT
GAAACTTCGATTTGCTCGATTCCCTTTCGACCAAACTGTCATTCACACTA
TGTATTTCAATGTTAGTACGAACGATTTTGTCGCACCGAGTTCTTCTGTT
ATGCTAAAATGTCAGTATACTTTAATTTTGTTATTGGGAGCATGGTTTAT
AATGCTTTCTGTAGCAtgaaaattttctcgaaatgtAACTTGCTTAAGGG
CAGTTTCGTGGTCTTATgggattatttttattttggtggATAATAGATtt
tattaagttttttttacataGATAATTATTTCATATCAGATTTTTATATT
GTATATTTTGGAATAATTtgattgatttcttttttaattttttaaat Run BLAST on NCBI transcript from alignment at sc0000370:51099..53985+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020764 ID=TCONS_00020764|Name=TCONS_00020764|organism=Clytia hemisphaerica|type=transcript|length=2887bp|location=Sequence derived from alignment at sc0000370:51099..53985+ (Clytia hemisphaerica)
AAATTATTTCAATAAACTCAACTAAAAAATTTGAGAAAATCTCTGTCCTC
TATAAATTTTGGGGCAGGCAAACTTCAAAAATGGTTTAATTTAAGTGAAC
TTTCGGACTCACGATCCTTGTGTGAAACATTTGTAATATCTGGTGGTATT
TCTTGTTCTCTTTTTTGGGGCCTGGGGCAACTTTTTGCCCCAAAACAAGT
CTATAATCTTAAAAATCTTACTTATAAATTTTACAATACTACCAATAATT
GACTCAAAAGACACTGAAGTCAGCCAATGGGTTTTGCACATTGGACAGCA
AACAACCCAAGCAGTGAAGCTATCATTCATTCAATAAGAATATTTCAGGT
AAAATCGCATTTTCGAATGACCACAATCAATTGGAAATTAACTTTGGAAA
GATATCAGAGATTGCGCTAGATGGTATTACACAAGTTGGCATTTCTGGGC
CTGAGAAACATCAGTTCCCAACGTTCCTATATCAAGATTTTGTTGCAATT
CCTTTAGAAGAGGTTGGCGTATATGGACTTGATCGAATTCAGGGTGTAGA
CAGAAATATCACAGCTATGAGGTAGAAGGTTAAAAATTCTTTCGGTTTTT
TATGAAGAGATTAGCCCTTTTCTCTTGCAGATAGGATCCTTCTTCACTGA
AAAAAGGCCAATCTCGTAATTTTAAGTTAGGAAAGCAAAAAATAAAGTAT
CGGTTTTCTCAGAAACTAATTTTTTAATTGGACCTTTTGCCTCGATGGCA
GCGATTTACACTAGACGAATTTTCAAAACCTAACAAAGTCTgataatttt
tagaaattctgATCTGAaggaatttcaaaattaatgacAAAAACATTTTG
ACCCTTCCGAGAGATGCTaatgtgttttgttttttccctTATTAAATCTC
TGGTTTACTGAAACAGTTTTCTTACCAATTTAGAAAGATATTTCAAGTCA
AGAAAAACTTGGTTGGCCCAGCTGCTTATTTTGCATTCGAGATCCTCTCC
TATAACAATGACACTACCATTCAGAATGAAAGAACTGGTGAGCGGTACCA
AGTCTTCAATGGAACCATCAGACTCAATATCATTATTGGTCGTTGGAAAT
TTTGTGGTCAAAACATTCAGTGTAAAGATAAAGACCAAAAGAACGAACGT
GgtcaatttttagattttgagttAAATTTCAACGGAGATGAACAGCTTCG
GGATCCGATTGTGAGGACTGGGTTGCGAGCAACAAGTTTTGTACCAGGAG
CCAAAAGACCATTGACTTATGATTATGGAGGAGTTGATGTCACTCCATCC
TTCAAGGTTTGGTTCAGATTATCTTTACCCTCTCTGCAAAAATGCATAtc
aggcacgacgcaacgggtacggcaggtacggcggCCGGCGGCCCGCCGCA
TTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNataaaatcgcttaaatttcctcattc
gccgtaccagatataaaaagcttccgtcgtgcctgcaTATTTATATTTAA
GAGAGAGTTAAGTATTGGTTTCACTATAACATTCATAAATTGTCGCGTTT
TTTCGACTTTATTATAACCAAAGAGCTCTAAATCCTATGGAATTTAAATG
TTGATTGAAAAGTtaaataccgtattacttcgaataaacacccccttctt
ttaaacgcccctcctaaaaggaaaattatttgataaacgcccccctcaaa
taaacgcccccttcgaatgaACGCTCCCTCtaggggaggggcgtttatta
gaaacttgtgactttaatacttcaatacCAGTGTTCATTGGGTtaaaaaa
ggaagattttagtcatttcttgtaaccaggGCAGTTTTGGATGCAATTTT
Agtcgttgaaccaaagaaattttcgaaattttgcactaaaaaatcctgat
aaagaacCAAAACAAAGGGTATATTTGCTCAAAATATTCGACTTTATAAA
CGCcctcttcttttaaacgccccctcgaataaacgcccctcctcaAATCG
AAAAAGTTGtataaacgccccgggcgtttattcgaagtaatactgTAATG
AACTTCAATTTTTAACGACTTTTGCCTTTATGATTCTCAGACTGAAAGGT
AACGAGGAATAAATACATTTTCCGAATCTTTTATTATAATTGTTTTCTTC
ATGGGTCAATGATAACTTTCTGCATCAAAAGTAAAAACATCCTTGTCCTG
TCCATATAACGTTCTTATATCGAAATCCTTTagattgaaatttaaaatta
aattttaaatctgTCTTGCAAATCTTTCAACTTCTTTGCTCGATTGTTTC
TATACACTGTTTCTTTATCTTTCAGTACCAACAAAATATCACATGGCCTG
TGTTCCCATCTCAATATCCAGACGTCAATGGAAATACCATGAAACTTCGA
TTTGCTCGATTCCCTTTCGACCAAACTGTCATTCACACTATGTATTTCAA
TGTTAGTACGAACGATTTTGTCGCACCGAGTTCTTCTGTTATGCTAAAAT
GTCAGTATACTTTAATTTTGTTATTGGGAGCATGGTTTATAATGCTTTCT
GTAGCAtgaaaattttctcgaaatgtAACTTGCTTAAGGGCAGTTTCGTG
GTCTTATgggattatttttattttggtggATAATAGATtttattaagttt
tttttacataGATAATTATTTCATATCAGATTTTTATATTGTATATTTTG
GAATAATTtgattgatttcttttttaattttttaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020764-exon-sc0000370-1491911889:51099..51446 | TCONS_00020764-exon-sc0000370-1491911889:51099..51446 | Clytia hemisphaerica | exon |
| TCONS_00020764-exon-sc0000370-1510915933:51099..51446 | TCONS_00020764-exon-sc0000370-1510915933:51099..51446 | Clytia hemisphaerica | exon |
| TCONS_00020764-exon-sc0000370-1575043694:51099..51446 | TCONS_00020764-exon-sc0000370-1575043694:51099..51446 | Clytia hemisphaerica | exon |
| TCONS_00020764-exon-sc0000370-1491911889:51606..51669 | TCONS_00020764-exon-sc0000370-1491911889:51606..51669 | Clytia hemisphaerica | exon |
| TCONS_00020764-exon-sc0000370-1510915933:51606..51669 | TCONS_00020764-exon-sc0000370-1510915933:51606..51669 | Clytia hemisphaerica | exon |
| TCONS_00020764-exon-sc0000370-1575043694:51606..51669 | TCONS_00020764-exon-sc0000370-1575043694:51606..51669 | Clytia hemisphaerica | exon |
| TCONS_00020764-exon-sc0000370-1491911889:52032..52404 | TCONS_00020764-exon-sc0000370-1491911889:52032..52404 | Clytia hemisphaerica | exon |
| TCONS_00020764-exon-sc0000370-1510915933:52032..52404 | TCONS_00020764-exon-sc0000370-1510915933:52032..52404 | Clytia hemisphaerica | exon |
| TCONS_00020764-exon-sc0000370-1575043694:52032..52404 | TCONS_00020764-exon-sc0000370-1575043694:52032..52404 | Clytia hemisphaerica | exon |
| TCONS_00020764-exon-sc0000370-1491911889:53574..53985 | TCONS_00020764-exon-sc0000370-1491911889:53574..53985 | Clytia hemisphaerica | exon |
| TCONS_00020764-exon-sc0000370-1510915933:53574..53985 | TCONS_00020764-exon-sc0000370-1510915933:53574..53985 | Clytia hemisphaerica | exon |
| TCONS_00020764-exon-sc0000370-1575043694:53574..53985 | TCONS_00020764-exon-sc0000370-1575043694:53574..53985 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000370 | supercontig | sc0000370:51099..53985 + |
Blast
The following BLAST results are available for this feature:
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