TCONS_00020760 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020760
Unique NameTCONS_00020760
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2607

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020760 ID=TCONS_00020760|Name=TCONS_00020760|organism=Clytia hemisphaerica|type=transcript|length=2607bp
TTTGGTTTGGTTTGTTTGgcataaaatgaaagaactgcCTCCACTGTTTA
TAAAAACGACTCACTTGTAATtactttcaattaaattttgtcGACCATGC
TGCAATTAACTCCAAATTCAAAATGTTGTAGACGCTTTTTGGGAGTCGgt
gTCGAATATTTAATGCAGCAGGATGACATCCGAAGAAATTAAAGAAGTGA
AAAACATCGGTTCTTGGTTCCGTCTCAAAAATCTAATTGGTCTAAAAAAT
AATGGTAGATCTTTCTTATATGATTTACTAAAAAGTCAAGAAGACACAGT
TTTTAAGTTGTATATGGGTGAAGAAACAACATATGCTTCCGATTATGTGT
CAGCTAAGTATTTATACGAAGAAGAGTACGTCTTTAGAGAGCCGTTcatt
ggaaaatattttaacacaaATATGCTTGGAGGACGTAAACCATCTATGTT
TTGCAACGGTGAggatcacgccacgaaaaaagCTGACACAATGAAAGTGT
TAGAGTACCGTAtggaaaaaataagtttgaaagATTTGAATGATGTCATC
GAATCGGAAATGAAAGCGATTGATGTTACCAAGGGAAAAGGAAACAATTT
CGAGGCTTGTCTTGAAAATGTTGCGAAATGCGTGGCAGATTCGCTTATTC
TTGGTAAAAGTCTCCACAATCGTGATGACTGGAAAGATTGGTTTGATAGC
TCTTTGAAGATGTTTAATTTCCATCCATGGAACTTTGGAGAAGCAGCAGA
CAGAGACAGATGTTTGAATGCAATGAAACAGACACCAACTGTTCAAAACC
TTGATAAAATCCTTCCCGAAACCACTCAAACAATGGAAGGGGAAACTTTT
GAATTAATGCACAATGTTCATTTCAACTGTACACCTGTACTATCATGGTT
AATGATCTCCTGTATTGCTCGCTTCACCGATTCATTAACTGAGGATGAAC
GACAAAGTTTGAGGGACGAAGCATCTCTTTTGTTTCGAGAAGAAACAGAC
TCGACTTTTGAAGAACGACTGAGCAAGTCGGAGAAGATTGATACTTTTAT
TTTGGAGATTATACGTTTGAACACACCTCATCTAGCTGgtacttaTGGAA
GAGCCAGGAAAGATTTTGTAATGGAATCCAAAACAGGGCGATATCAAATC
CATAAAGATGATTTACTGTGTACTTTCGTCTACGCCATTCATCGAGATGA
AGAAGTTTTTGAGGAtcctttcaaattgaaaatgacCCGTGATAGGAAGA
TTATCGAGAATCAAAATGTGTGTTTTGGGTCTCCTCTTGTCATGGAACCT
ACAGCCAACAATCATAAATGTCCAGCTGCTAGAGTTATGATCAATGTATT
GAAAATGTTTCTGGCACATTTCACTAGATGTGATGTAAACATTACGTCAG
ATGTCACGTGCTCTTACACAAGCTNTCAACAATCATAAATGTCCAGCTGA
TAGAATTATGATCAAtgtattgaaaatgtttttggcacaTTTCACTAGAT
GTGATGTAAACATTACGTCAGATGTCACGTGCTCTTACACAAGCTCAGAA
AGATTGGCATGCACCGATGAGCCTCTTGTTGTTGAAAAGTTCGTGTACAA
AGAATAGACGTACAAGTTTTCTTATAGAAACATTCATAATCAATGAAGCT
TTCAGATGttctgagttttaagcctaaaaagttcttaaattttcttattt
ttactaCCTTTAgagttttcatttctttaatcctattttatagaaaattt
attttcaatgtatcctagtaatatcttagaaattttttcttataacagTA
GCGTGTGGTCACCTCCGTTGTTTAGctttatgtctatgagtgtTGTCGCT
CGTCTCGCTTATTATGACATATCAAATTCTAGCTTGTGTCTAGCTTATCG
TGCGATACGCTCGATCGCTTCAACACTGGAGAGAGAGCGATTTCTCACAT
AGGAGCTCCCATAAGTCTACAATTAAAGTGGCACCATCATACGCCGTCCA
AAATGGCCTTTGATGGTAATAACTAAAAACTTACTAATCACATCCAGGAT
CTTTAATTAGGCCGAATAACAGATTGTAATCTCAGAACATTCCCTAAAGA
TTTCAGAAACTCGCTTCATTGATTTTTCATAAGTCTCAGAAAAGTTTTAA
ATAATCTGCTTGAGCCTAACACGGGGATATGTGCTCTCCATCTTAGATTC
TTTAGATGTCGATGTGACTGAAACATGTGCAATCAAACTCTCACAGTTCG
TCCAAAGCTTAAAATAAGCTATGGTGCTCACGGTAgcaaatccttaaaat
gttcttgacttcccagctggcacacaacgttgtttcaacgtccgtCTAAT
GTTctcaacgtccatataacgttagatggacgttgaaacaacgttgtgtg
ccagctgggttgtttttaatattttggccggCCAAAGAAGCTACGCTCTT
ATACAgttcattttcctttgtttttttatagatttcctttgtttagtttt
tttttatttattaacaTCTCTTTGATCACCATAAAACTACaatatataat
tttaattttcttttttgggaaaaaaatacaTACATATCTACATTGCTTTT
TAAAATA
Run BLAST on NCBI

transcript from alignment at sc0000370:26860..33925+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020760 ID=TCONS_00020760|Name=TCONS_00020760|organism=Clytia hemisphaerica|type=transcript|length=7066bp|location=Sequence derived from alignment at sc0000370:26860..33925+ (Clytia hemisphaerica)
TTTGGTTTGGTTTGTTTGgcataaaatgaaagaactgcCTCCACTGTTTA
TAAAAACGACTCACTTGTAATtactttcaattaaattttgtcGACCATGC
TGCAATTAACTCCAAATTCAAAATGTTGTAGACGCTTTTTGGGAGTCGGT
AAtgttttcctatcaattttctctGTTTCatataatcgattttcgccaga
cagtctcagtgaaaaagcacccaaaagttttgaaatgtaACATTAATGta
agactttttttttgagtttttttatgaccaatttgctttgaaaattgttt
attaattattattatCTATTTTTTTTGTAACCTCATCAATTTAGTTTCGA
CCTATTTTATTCCCTAGGCACGAGAATTCTttgataaaactttttgttaC
CTTTTTAGTAGgtagaatattttttcaataaatgtaaGATCAAAATCTGT
ACACAGTAACTTGAAAAAGACACGTAAGAGGTCGAAATATCGTTTCAAAA
AAATATgctatgttttattttgatttggttgcACATCATaaggctttttt
ttataaaaacttcaacacaactgtttttttttggaaatatgtcGTCTTAC
TTACTTATCTACGTGTCTTAATATTTTCTGCTAATTACTTTGTTTACTAC
TTTAACGTTGATGTCATTTCCATTAGGGGTTTTACATGGGCTGTCCTTTT
CATTGTCATTAATTATTACAGTAAGtgaagtatgtaatttttccttAAGC
TTTttattatacagggtgtccctaattaaagtatcgagtttgaacatgca
attgagtagaaaagtttgtgtgtgttatcgctaaaatataagaacgttca
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaagag
ggagagcttaaaatacaattttgtgaacacacacataaaactttctactc
atagttgtgtttcgactcgatactttaattagggacaccctgtataagta
GAGTACTCTATGAGTGAAATCACTCTGTGTGTCTGATTTATATACAAAAA
TATATCCAAAAAATTTAAGGTAGgtttttatttgataagattGATTAAAA
ATGGCAAAGTTATGACATAAGGTTTGTCATACATACAACACTTCAATGGA
TTTTCACCAGTTTCAAGCGCCAAACAGTAGCGTACAAAGATAGACGCAAA
CAAAATttctgtacagggtgtcccgaaaaaaagtatcgagtcgtaccact
tctatataAAGAAAgatcttgtgtgtgtttcaccatgaacatataaacga
ctggacatctatcttttattgtctctttgaagcgagcttcgttgccgcct
gtatttcaaaattggtatgaaaaatccgacaaNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNaattggtatgaaaaatccgacaatattctgtca
taattttatttctttgaattatttaggtaaaaagattgatagagcttgaa
cattactcctaatgtacaaaTAATTTGTTTCCgatttttttcacaagttt
gcaatatattttatcaatattttcaactctgaaatgcagaatttcaacta
cGTGTATACTTTAGAAacacttttgtcactccaataatcttttttatgac
tttaaaaaaatagcttgccaaagttgagagcctgtgtcataagaatatcg
aaattagaatgtgacactctttaaaattattagacacttttaagtcagaa
tttagaaatattagtcggagttttgacaagctgacgatgattttgcctct
gttatctttgttatgatatagataaaagacttNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNgtccagtcgtttatatgttcatggtttcGCTAAAGTT
TCTCTTTGTGTCATGTTAATTGTCacgagacatcttttatgaataacttt
aataaaaaacaattttcaataactttaacgtcgtAAAAATTGTAacgaaa
gttaattctttttaatcataatgactgttgtaaaagcaattattttgttg
gtatatattttcttacattttgttaaacacacgcaacaaccttctattca
gaatcatgttcgaactcgatacttttttttcaggacaccctgtagaagag
tagatttttatgacacttatgacaattatctattcataatataaaaagat
gattgcattgtcataaaaatctacttTCCAACACAAATACTGCGCCCCTT
TTGTCCACGCTAATGTCACAGATGTAAGAAAAactgaatttatttttatt
tttaggtgTCGAATATTTAATGCAGCAGGATGACATCCGAAGAAATTAAA
GAAGTGAAAAACATCGGTTCTTGGTTCCGTCTCAAAAATCTAATTGGTCT
AAAAAATAATGGTAGATCTTTCTTATATGATTTACTAAAAAGTCAAGAAG
ACACAGTTTTTAAGTTGTATATGGGTGAAGAAACAACATATGCTTCCGAT
TATGTGTCAGCTAAGTATTTATACGAAGAAGAGTACGTCTTTAGAGAGCC
GTTcattggaaaatattttaacacaaATATGCTTGGAGGACGTAAACCAT
CTATGTTTTGCAACGGTGAggatcacgccacgaaaaaagCTGACACAATG
AAAGTGTTAGAGTACCGTAtggaaaaaataagtttgaaagATTTGAATGA
TGTCATCGAATCGGAAATGAAAGCGATTGATGTTACCAAGGGAAAAGGAA
ACAATTTCGAGGCTTGTCTTGAAAATGTAAGAATTTTAAAAGTAAAcctt
tttgatgatatcacttgATAGGGTTGTAGGATGGAACTTAAGCTTATTAA
GCTTGCCAGAgacaaccccttctcacaggaTTGGCCTAAATGTTGTTCCC
AGTTGAAAATTATACTCGAATTTTGTCCAAGCTTACACTGGAAAAAAATT
GTGCTATTTCTTTCATCGCCACCGAATTTTATGACAGAACTTTCCTGGTA
TTTATGTTACCAGTCTGCTTAAAACCTGATCACGCTAAAGATTGAAAGGT
GTCTATTAGCCGTATGTTTGAGTGAGTAAGATAAGACCCCAGtttcactg
gaaaatttggtaaaatcttGTCCCTGgttggagaaaaaaaacacaatttc
agccccatcggtaaatcgattttatttttatccccattgaaattaAATTG
CACTCTAAAGATTATCATTCCCACTGGTTTTTTCGACAGGAATAAATCTA
ATAGGAAATATGATATATTTCAGGTTGCGAAATGCGTGGCAGATTCGCTT
ATTCTTGGTAAAAGTCTCCACAATCGTGATGACTGGAAAGATTGGTTTGA
TAGCTCTTTGAAGATGTTTAATTTCCATCCATGGAACTTTGGAGAAGCAG
CAGACAGAGACAGATGTTTGAATGCAATGAAACAGGTATTGATTTAGCCT
TTAAATCTTTAACCTTGCCAACTGCGCAGTGTAATATGTTCTCAAAATCT
TTAAAGTCATGAAAATAAATCATCAATAATTGTCCCTGTCAAATATAAAC
TTGTATATAAATATATTTGAGATATTTGCCAAGTATTAAGAATCTAGACA
TTTCCAGTTACCTGATTTTGCCTGTGTGACGCCGGTGTCTTTCGATGTTT
CGAGAAGCTTACTAAAAGAAGATCCAACTAAGGaaatatgtttttttcta
tTGTATAAGGAAGTTGAAGTGTATTATTTCTTAATTTTACTAAATTTTCA
TTGATTCCTCTCTCATCTTTCAGACACCAACTGTTCAAAACCTTGATAAA
ATCCTTCCCGAAACCACTCAAACAATGGAAGGGGAAACTTTTGAATTAAT
GCACAATGTTCATTTCAACTGTACACCTGTACTATCATGGTTAATGATCT
CCTGTATTGCTCGCTTCACCGATTCATTAACTGAGGATGAACGACAAAGT
TTGAGGGACGAAGCATCTCTTTTGTTTCGAGAAGAAACAGACTCGACTTT
TGAAGAACGACTGAGCAAGTCGGAGAAGATTGATACTTTTATTTTGGAGA
TTATACGTTTGAACACACCTCATCTAGCTGGTAAGGTCATGGCAAGGTTT
TATTCTTCGTGCAAAAACTTCTGACTGTAAATGAACTGTTTTTAAAACAC
TGAAATAACTTTGTAAGAAATGATATTTTGcctgcttttttataagaagc
agTAAATTTCAGCTGAGGCGcgacttttctttttcgaattttctttattt
ttctttatttgagATTTTCACgattaaaaatgtttaattatcaagagggt
ttgtaaaacattggtgaatgacaatttaaaaaaatgaaaaatattgtatt
caataataaagttataagaaatttcttttgtagGATTATAAATagcactt
tttcatttgaaatactgCGCTACATcacggggtgcctcactttctaactg
atattttcagatagcgagtcggtatgtctgattatggaaacaatttaaag
tcaattgaaacaataattgtcaaaatatttactcCGATATTTTTAAAGAG
GAATCATGAAagttctcaaattcataacatacgctgataaaattagattt
acttcacttttcttataaaaacaaaacactcAAGGgtacagagatggatt
tctattgtgaacagtttacaatagaaaagacaaagaatatatccgctaag
gaattctcctCCTTCGCTATTACATATCCCTGAAATCAGCAACTACCCAA
CCGTTTCTACAACATTCAGAAGCtgaaattattttataattttgccaaat
taagcctcatattctttttaaaaaatcatttaacatGACGATACTACGAC
TTCTCTTGATTACACTAATTGACCGAATCTATCGTAttttttttcaggta
cttaTGGAAGAGCCAGGAAAGATTTTGTAATGGAATCCAAAACAGGGCGA
TATCAAATCCATAAAGATGATTTACTGTGTACTTTCGTCTACGCCATTCA
TCGAGATGAAGAAGTTTTTGAGGAtcctttcaaattgaaaatgacCCGTG
ATAGGAAGATTATCGAGAATCAAAATGTGTGTTTTGGGTCTCCTCTTGTC
ATGGAACCTACAGCCAACAATCATAAATGTCCAGCTGCTAGAGTTATGAT
CAATGTATTGAAAATGTTTCTGGCACATTTCACTAGATGTGATGTAAACA
TTACGTCAGATGTCACGTGCTCTTACACAAGCTNTCAACAATCATAAATG
TCCAGCTGATAGAATTATGATCAAtgtattgaaaatgtttttggcacaTT
TCACTAGATGTGATGTAAACATTACGTCAGATGTCACGTGCTCTTACACA
AGCTCAGAAAGATTGGCATGCACCGATGAGCCTCTTGTTGTTGAAAAGTT
CGTGTACAAAGAATAGACGTACAAGTTTTCTTATAGAAACATTCATAATC
AATGAAGCTTTCAGATGttctgagttttaagcctaaaaagttcttaaatt
ttcttatttttactaCCTTTAgagttttcatttctttaatcctattttat
agaaaatttattttcaatgtatcctagtaatatcttagaaattttttctt
ataacagTAGCGTGTGGTCACCTCCGTTGTTTAGctttatgtctatgagt
gtTGTCGCTCGTCTCGCTTATTATGACATATCAAATTCTAGCTTGTGTCT
AGCTTATCGTGCGATACGCTCGATCGCTTCAACACTGGAGAGAGAGCGAT
TTCTCACATAGGAGCTCCCATAAGTCTACAATTAAAGTGGCACCATCATA
CGCCGTCCAAAATGGCCTTTGATGGTAATAACTAAAAACTTACTAATCAC
ATCCAGGATCTTTAATTAGGCCGAATAACAGATTGTAATCTCAGAACATT
CCCTAAAGATTTCAGAAACTCGCTTCATTGATTTTTCATAAGTCTCAGAA
AAGTTTTAAATAATCTGCTTGAGCCTAACACGGGGATATGTGCTCTCCAT
CTTAGATTCTTTAGATGTCGATGTGACTGAAACATGTGCAATCAAACTCT
CACAGTTCGTCCAAAGCTTAAAATAAGCTATGGTGCTCACGGTAgcaaat
ccttaaaatgttcttgacttcccagctggcacacaacgttgtttcaacgt
ccgtCTAATGTTctcaacgtccatataacgttagatggacgttgaaacaa
cgttgtgtgccagctgggttgtttttaatattttggccggCCAAAGAAGC
TACGCTCTTATACAgttcattttcctttgtttttttatagatttcctttg
tttagtttttttttatttattaacaTCTCTTTGATCACCATAAAACTACa
atatataattttaattttcttttttgggaaaaaaatacaTACATATCTAC
ATTGCTTTTTAAAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011654XLOC_011654Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020760-exon-sc0000370-1491911889:26860..27007TCONS_00020760-exon-sc0000370-1491911889:26860..27007Clytia hemisphaericaexon
TCONS_00020760-exon-sc0000370-1510915933:26860..27007TCONS_00020760-exon-sc0000370-1510915933:26860..27007Clytia hemisphaericaexon
TCONS_00020760-exon-sc0000370-1575043694:26860..27007TCONS_00020760-exon-sc0000370-1575043694:26860..27007Clytia hemisphaericaexon
TCONS_00020760-exon-sc0000370-1491911889:29815..30285TCONS_00020760-exon-sc0000370-1491911889:29815..30285Clytia hemisphaericaexon
TCONS_00020760-exon-sc0000370-1510915933:29815..30285TCONS_00020760-exon-sc0000370-1510915933:29815..30285Clytia hemisphaericaexon
TCONS_00020760-exon-sc0000370-1575043694:29815..30285TCONS_00020760-exon-sc0000370-1575043694:29815..30285Clytia hemisphaericaexon
TCONS_00020760-exon-sc0000370-1491911889:30783..30944TCONS_00020760-exon-sc0000370-1491911889:30783..30944Clytia hemisphaericaexon
TCONS_00020760-exon-sc0000370-1510915933:30783..30944TCONS_00020760-exon-sc0000370-1510915933:30783..30944Clytia hemisphaericaexon
TCONS_00020760-exon-sc0000370-1575043694:30783..30944TCONS_00020760-exon-sc0000370-1575043694:30783..30944Clytia hemisphaericaexon
TCONS_00020760-exon-sc0000370-1491911889:31283..31589TCONS_00020760-exon-sc0000370-1491911889:31283..31589Clytia hemisphaericaexon
TCONS_00020760-exon-sc0000370-1510915933:31283..31589TCONS_00020760-exon-sc0000370-1510915933:31283..31589Clytia hemisphaericaexon
TCONS_00020760-exon-sc0000370-1575043694:31283..31589TCONS_00020760-exon-sc0000370-1575043694:31283..31589Clytia hemisphaericaexon
TCONS_00020760-exon-sc0000370-1491911889:32407..33925TCONS_00020760-exon-sc0000370-1491911889:32407..33925Clytia hemisphaericaexon
TCONS_00020760-exon-sc0000370-1510915933:32407..33925TCONS_00020760-exon-sc0000370-1510915933:32407..33925Clytia hemisphaericaexon
TCONS_00020760-exon-sc0000370-1575043694:32407..33925TCONS_00020760-exon-sc0000370-1575043694:32407..33925Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000370supercontigsc0000370:26860..33925 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.92035	7.23227	9.18238	8.74173	151.621	146.306	98.6204	114.855	10.6367	6.3009	5.20734	8.68201	3.29054	2.88893	3.69067	1.72493	3.8057	4.68997	0	1.59129	0	0	6.47935	3.86056	0	0.249151	0	0	0.969791	1.48397
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020760 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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